Table of contents

Report

Group: xenbase - Dataset: xenbase

SUMMARY

This report generated on 2022-12-03

Header From Original Association File

!gaf-version: 2.2
!Project_name: Xenbase
!URL: http://www.xenbase.org/
!Contact Email: xenbase@cchmc.org
!Funding: NICHD of US National Institutes of Health
!date: 2022-11-25
!
! Column Content Required? Cardinality Example
! 1 DB required 1 Xenbase
! 2 DB Object ID required 1 XB-GENE-920512
! 3 DB Object Symbol required 1 ventx1.1.L
! 4 Qualifier required 1 or 2 NOT|acts_upstream_of_or_within
! 5 GO ID required 1 GO:0030509
! 6 DB:Reference (|DB:Reference) required 1 or greater PMID:11944926
! 7 Evidence Code required 1 IMP
! 8 With (or) From optional 0 or greater GO:0043565
! 9 Aspect required 1 P
! 10 DB Object Name optional 0 or 1 VENT homeobox 1, gene 1 L homeolog
! 11 DB Object Synonym (|Synonym) optional 0 or greater PV.1|Xvent-1b|posterior-ventral 1|ventx1.1-a|ventx1.1-b
! 12 DB Object Type required 1 Protein
! 13 Taxon(|taxon) required 1 or 2 taxon:8355
! 14 Date required 1 20090118
! 15 Assigned By required 1 Xenbase
! 16 Annotation Extension optional 0 or greater part_of(CL:0000576)
! 17 Gene Product Form ID optional 0 or 1 UniProtKB:P12345-2
!

Contents

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other

MESSAGES

gorule-0000002

No 'NOT' annotations to 'protein binding ; GO:0005515'

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

gorule-0000013

Taxon-appropriate annotation check

Messages

gorule-0000015

Dual species taxon check

gorule-0000016

With/From: IC annotations require a With/From GO ID

Messages

gorule-0000017

IDA annotations must not have a With/From entry

gorule-0000018

IPI annotations require a With/From entry

Messages

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages