Table of contents

Report

Group: tair - Dataset: tair

SUMMARY

This report generated on 2022-05-24

Header From Original Association File

!gaf-version: 2.2
!generated-by: The Arabidopsis Information Resource (TAIR)
!URL: http://www.arabidopsis.org
!Contact Email: curator@arabidopsis.org
!date-generated: 2022-04-01

Contents

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other

MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.2 specifications

Messages

gorule-0000002

No 'NOT' annotations to 'protein binding ; GO:0005515'

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

Messages

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IPI should not be used with GO:0003824 catalytic activity or descendents

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No annotations should be made to uninformative high level terms

Messages

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

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Taxon-appropriate annotation check

Messages

gorule-0000015

Dual species taxon check

gorule-0000016

With/From: IC annotations require a With/From GO ID

gorule-0000017

IDA annotations must not have a With/From entry

gorule-0000018

IPI annotations require a With/From entry

Messages

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Automatic repair of annotations to merged or obsoleted terms

Messages

gorule-0000028

Aspect can only be one of C, P, F and should be repaired using the GO term

gorule-0000029

IEAs should be less than one year old.

gorule-0000030

Deprecated GO_REFs are not allowed

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

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Check for valid combination of evidence code and GO_REF

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

Messages

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Annotations to ISS, ISA and ISO should not be self-referential

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References should have only one ID per ID space

gorule-0000057

Group specific filter rules should be applied to annotations

gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

gorule-0000061

Allowed gene product to term relations (gp2term)

Messages

other

Predictions

GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004601 peroxidase activity IBA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004601 peroxidase activity IDA
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0061630 ubiquitin protein ligase activity IDA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0008310 single-stranded DNA 3'-5' exodeoxyribonuclease activity IBA
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0008310 single-stranded DNA 3'-5' exodeoxyribonuclease activity IBA
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0061631 ubiquitin conjugating enzyme activity IBA
GO:0009873 ethylene-activated signaling pathway AnnotationPropagation P GO:0038199 ethylene receptor activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0050790 regulation of catalytic activity AnnotationPropagation P GO:0005096 GTPase activator activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0015914 phospholipid transport AnnotationPropagation P GO:0008526 phosphatidylinositol transfer activity IBA
GO:0120009 intermembrane lipid transfer AnnotationPropagation P GO:0008526 phosphatidylinositol transfer activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0004839 ubiquitin activating enzyme activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0001510 RNA methylation AnnotationPropagation P GO:0008173 RNA methyltransferase activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation IMP
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0006417 regulation of translation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0006833 water transport AnnotationPropagation P GO:0015250 water channel activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015250 water channel activity IBA
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0061630 ubiquitin protein ligase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0005739 mitochondrion AnnotationPropagation C GO:0032043 mitochondrial DNA catabolic process IMP
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0051170 import into nucleus AnnotationPropagation P GO:0061608 nuclear import signal receptor activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation IBA
GO:1901642 nucleoside transmembrane transport AnnotationPropagation P GO:0005337 nucleoside transmembrane transporter activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0003873 6-phosphofructo-2-kinase activity IBA
GO:0036066 protein O-linked fucosylation AnnotationPropagation P GO:0046922 peptide-O-fucosyltransferase activity IBA
GO:0043086 negative regulation of catalytic activity AnnotationPropagation P GO:0046910 pectinesterase inhibitor activity IDA
GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic AnnotationPropagation P GO:0004535 poly(A)-specific ribonuclease activity IBA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0051555 flavonol biosynthetic process AnnotationPropagation P GO:0045431 flavonol synthase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0035352 NAD transmembrane transport AnnotationPropagation P GO:0051724 NAD transmembrane transporter activity IDA
GO:1903830 magnesium ion transmembrane transport AnnotationPropagation P GO:0015095 magnesium ion transmembrane transporter activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0051170 import into nucleus AnnotationPropagation P GO:0061608 nuclear import signal receptor activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0043086 negative regulation of catalytic activity AnnotationPropagation P GO:0004857 enzyme inhibitor activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway AnnotationPropagation P GO:0004675 transmembrane receptor protein serine/threonine kinase activity IBA
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0008320 protein transmembrane transporter activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism IBA
GO:0043086 negative regulation of catalytic activity AnnotationPropagation P GO:0046910 pectinesterase inhibitor activity IBA
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0061630 ubiquitin protein ligase activity IBA
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0003887 DNA-directed DNA polymerase activity IBA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0017108 5'-flap endonuclease activity IBA
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0017108 5'-flap endonuclease activity IBA
GO:0050790 regulation of catalytic activity AnnotationPropagation P GO:0005096 GTPase activator activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0043086 negative regulation of catalytic activity AnnotationPropagation P GO:0046910 pectinesterase inhibitor activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0061025 membrane fusion AnnotationPropagation P GO:0005484 SNAP receptor activity IBA
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0061630 ubiquitin protein ligase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0015450 protein-transporting ATPase activity ISS
GO:0043086 negative regulation of catalytic activity AnnotationPropagation P GO:0046910 pectinesterase inhibitor activity IBA
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0003887 DNA-directed DNA polymerase activity IDA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0018108 peptidyl-tyrosine phosphorylation AnnotationPropagation P GO:0004713 protein tyrosine kinase activity IBA
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0061630 ubiquitin protein ligase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity ISS
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi IBA
GO:0005737 cytoplasm AnnotationPropagation C GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006591 ornithine metabolic process AnnotationPropagation P GO:0004585 ornithine carbamoyltransferase activity IBA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0004519 endonuclease activity IBA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003712 transcription coregulator activity IBA
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0061630 ubiquitin protein ligase activity IBA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004709 MAP kinase kinase kinase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IDA
GO:0097502 mannosylation AnnotationPropagation P GO:0051753 mannan synthase activity IBA
GO:0050790 regulation of catalytic activity AnnotationPropagation P GO:0005093 Rab GDP-dissociation inhibitor activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0061630 ubiquitin protein ligase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:1902358 sulfate transmembrane transport AnnotationPropagation P GO:0015116 sulfate transmembrane transporter activity IGI
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0061630 ubiquitin protein ligase activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:1900864 mitochondrial RNA modification IMP
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0016571 histone methylation AnnotationPropagation P GO:0046976 histone methyltransferase activity (H3-K27 specific) IBA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004601 peroxidase activity IBA
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway AnnotationPropagation P GO:0004675 transmembrane receptor protein serine/threonine kinase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0071805 potassium ion transmembrane transport AnnotationPropagation P GO:0015271 outward rectifier potassium channel activity IBA
GO:0043086 negative regulation of catalytic activity AnnotationPropagation P GO:0046910 pectinesterase inhibitor activity IDA
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0061631 ubiquitin conjugating enzyme activity IBA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity ISS
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006357 regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IBA
GO:0015931 nucleobase-containing compound transport AnnotationPropagation P GO:0005338 nucleotide-sugar transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0005338 nucleotide-sugar transmembrane transporter activity IBA
GO:1901264 carbohydrate derivative transport AnnotationPropagation P GO:0005338 nucleotide-sugar transmembrane transporter activity IBA
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0061630 ubiquitin protein ligase activity IBA
GO:0006412 translation AnnotationProp