Table of contents

Report

Group: tair - Dataset: tair

SUMMARY

This report generated on 2021-09-22

Header From Original Association File

!gaf-version: 2.2
!generated-by: The Arabidopsis Information Resource (TAIR)
!URL: http://www.arabidopsis.org
!Contact Email: curator@arabidopsis.org
!date-generated: 2021-07-01

Contents

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other

MESSAGES

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GAF lines are parsed according to GAF 2.1 specifications

Messages

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No 'NOT' annotations to 'protein binding ; GO:0005515'

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IEP and HEP usage is restricted to terms from the Biological Process ontology

Messages

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IPI should not be used with GO:0003824 catalytic activity or descendents

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No annotations should be made to uninformative high level terms

Messages

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ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

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Taxon-appropriate annotation check

Messages

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Dual species taxon check

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With/From: IC annotations require a With/From GO ID

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IDA annotations must not have a With/From entry

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IPI annotations require a With/From entry

Messages

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Automatic repair of annotations to merged or obsoleted terms

Messages

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Aspect can only be one of C, P, F and should be repaired using the GO term

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IEAs should be less than one year old.

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Deprecated GO_REFs are not allowed

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IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

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Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

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Qualifier: IKR evidence code requires a NOT qualifier

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Check for valid combination of evidence code and GO_REF

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The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

Messages

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Annotations to ISS, ISA and ISO should not be self-referential

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References should have only one ID per ID space

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Group specific filter rules should be applied to annotations

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Object extensions should conform to the extensions-patterns.yaml file in metadata

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Allowed gene product to term relations (gp2term)

Messages

other

Predictions

GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity IBA
GO:0071577 zinc ion transmembrane transport AnnotationPropagation P GO:0005385 zinc ion transmembrane transporter activity IBA
GO:0006470 protein dephosphorylation AnnotationPropagation P GO:0004721 phosphoprotein phosphatase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006913 nucleocytoplasmic transport AnnotationPropagation P GO:0017056 structural constituent of nuclear pore IBA
GO:0006508 proteolysis AnnotationPropagation P GO:0004252 serine-type endopeptidase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0050790 regulation of catalytic activity AnnotationPropagation P GO:0005096 GTPase activator activity IBA
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0061630 ubiquitin protein ligase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0005739 mitochondrion AnnotationPropagation C GO:0045039 protein insertion into mitochondrial inner membrane IBA
GO:0006508 proteolysis AnnotationPropagation P GO:0004222 metalloendopeptidase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0004672 protein kinase activity IBA
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0061630 ubiquitin protein ligase activity IBA
GO:0046901 tetrahydrofolylpolyglutamate biosynthetic process AnnotationPropagation P GO:0004326 tetrahydrofolylpolyglutamate synthase activity IBA
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0004674 protein serine/threonine kinase activity IBA
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006412 translation AnnotationPropagation P GO:0030533 triplet codon-amino acid adaptor activity TAS
GO:0006508 prot