Table of contents

Summary

GAF summary

Found 220195 annotations in 220215 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000001 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000001) Basic GAF checks, there are 6 violations with type Error.

For rule GO_AR:0000003 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000003) Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field, there are 33 violations with type Warning.

For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008) No annotations should be made to uninformative high level terms, there are 163 violations with type Warning.

For rule GO_AR:0000017 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000017) IDA annotations must not have a With/From entry, there are 11 violations with type Warning.

For rule GO_AR:0000018 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000018) IPI annotations require a With/From entry, there are 36 violations with type Warning.

GAF Prediction Summary

Found 3252 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf    go/releases/2019-09-13/extensions/go-gaf.owl

Report

Group: tair - Dataset: tair

SUMMARY

This report generated on 2019-09-16

Header From Original Association File

!gaf-version: 2.0

Contents

gorule-0000006

gorule-0000008

gorule-0000017

gorule-0000018

gorule-0000027

gorule-0000029

gorule-0000033

other

MESSAGES

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

Messages

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000017

IDA annotations must not have a With/From entry

Messages

gorule-0000018

IPI annotations require a With/From entry

Messages

gorule-0000027

Each identifier in GAF is valid

Messages

gorule-0000029

All IEAs over a year old are removed

Messages