Shared Annotation Check

Tools and rules for intersections/co-annotation checks in the Gene Ontology. Latest raw output on build server.

Looked at 107 rules.
Skipped 3 rules when making annotation summary due to size.

For remaining annotation summary, found 2400 total erring annotation(s) with 431 EXP annotation(s) and 1307 IEA annotation(s).

Exited with 72 broken rule(s).

Compiled and published on 2020-02-12T22:54:45.351Z.

Rule check data

No.Rule summaryDescriptionPass?GP countAnn. details
No.Rule summaryDescriptionPass?GP countAnn. details
1GO:0006520 && GO:0006310cellular amino acid metabolic process
DNA recombination
fail5all: 15; exp: 1; iea: 14
annotation link
2GO:0006520 && GO:0006281cellular amino acid metabolic process
DNA repair
fail6all: 21; exp: 3; iea: 17
annotation link
3GO:0006520 && GO:0006260cellular amino acid metabolic process
DNA replication
fail4all: 10; exp: 0; iea: 8
annotation link
4GO:0006520 && GO:0030437cellular amino acid metabolic process
ascospore formation
fail7all: 15; exp: 3; iea: 12
annotation link
5GO:0006520 && GO:0007155 && !(GO:0017101)cellular amino acid metabolic process
cell adhesion
!   aminoacyl-tRNA synthetase multienzyme complex
fail23all: 69; exp: 13; iea: 50
annotation link
6GO:0006520 && GO:0071554cellular amino acid metabolic process
cell wall organization or biogenesis
fail17all: 56; exp: 17; iea: 27
annotation link
7GO:0006520 && GO:0000070cellular amino acid metabolic process
mitotic sister chromatid segregation
fail6all: 12; exp: 0; iea: 12
annotation link
8GO:0006520 && GO:0051186 && !(GO:0034628 || GO:0034354 || GO:0019442 || GO:0008705)cellular amino acid metabolic process
cofactor metabolic process
!   'de novo' NAD biosynthetic process from aspartate
!   'de novo' NAD biosynthetic process from tryptophan
!   tryptophan catabolic process to acetyl-CoA
!   methionine synthase activity
fail1903not available due to size (>100)
9GO:0006520 && GO:0000747cellular amino acid metabolic process
conjugation with cellular fusion
fail3all: 6; exp: 0; iea: 6
annotation link
10GO:0006520 && GO:0000910cellular amino acid metabolic process
cytokinesis
fail4all: 15; exp: 5; iea: 7
annotation link
11GO:0006520 && GO:0002181 && !(GO:0043039 || GO:0003994)cellular amino acid metabolic process
cytoplasmic translation
!   tRNA aminoacylation
!   aconitate hydratase activity
pass0-
12GO:0006520 && GO:0007010 && !(MGI:107537)cellular amino acid metabolic process
cytoskeleton organization
!   MGI:107537
fail11all: 29; exp: 6; iea: 14
annotation link
13GO:0006520 && GO:0016071 && !(MGI:1338011)cellular amino acid metabolic process
mRNA metabolic process
!   MGI:1338011
fail1all: 2; exp: 1; iea: 0
annotation link
14GO:0006520 && GO:0007126cellular amino acid metabolic process
GO:0007126
pass0-
15GO:0006520 && GO:0006913cellular amino acid metabolic process
nucleocytoplasmic transport
fail1all: 2; exp: 0; iea: 1
annotation link
16GO:0006520 && GO:0007031 && !(WB:WBGene00006946)cellular amino acid metabolic process
peroxisome organization
!   WB:WBGene00006946
fail7all: 33; exp: 14; iea: 0
annotation link
17GO:0006520 && GO:0006486 && !(GO:0003950)cellular amino acid metabolic process
protein glycosylation
!   NAD+ ADP-ribosyltransferase activity
fail20all: 46; exp: 4; iea: 23
annotation link
18GO:0006520 && GO:0006605 && !(WB:WBGene00006946)cellular amino acid metabolic process
protein targeting
!   WB:WBGene00006946
fail8all: 38; exp: 14; iea: 2
annotation link
19GO:0006520 && GO:1901990cellular amino acid metabolic process
regulation of mitotic cell cycle phase transition
fail20all: 113; exp: 13; iea: 86
annotation link
20GO:0006520 && GO:0042254cellular amino acid metabolic process
ribosome biogenesis
fail9all: 32; exp: 5; iea: 14
annotation link
21GO:0006520 && GO:0006399 && !(GO:0043039 || GO:0031071)cellular amino acid metabolic process
tRNA metabolic process
!   tRNA aminoacylation
!   cysteine desulfurase activity
fail52all: 220; exp: 28; iea: 160
annotation link
22GO:0006399 && GO:0006310 && !(GO:0045190)tRNA metabolic process
DNA recombination
!   isotype switching
fail22all: 53; exp: 13; iea: 40
annotation link
23GO:0006399 && GO:0030437tRNA metabolic process
ascospore formation
pass0-
24GO:0006399 && GO:0005975tRNA metabolic process
carbohydrate metabolic process
fail2all: 6; exp: 0; iea: 6
annotation link
25GO:0006399 && GO:0007155tRNA metabolic process
cell adhesion
fail4all: 8; exp: 1; iea: 7
annotation link
26GO:0006399 && GO:0071554tRNA metabolic process
cell wall organization or biogenesis
fail5all: 10; exp: 2; iea: 8
annotation link
27GO:0006399 && GO:0007059tRNA metabolic process
chromosome segregation
fail7all: 24; exp: 3; iea: 20
annotation link
28GO:0006399 && GO:0051186 && !(GO:0002143 || GO:0070733 || GO:0004792 || GO:0006777)tRNA metabolic process
cofactor metabolic process
!   tRNA wobble position uridine thiolation
!   protein adenylyltransferase activity
!   thiosulfate sulfurtransferase activity
!   Mo-molybdopterin cofactor biosynthetic process
fail52all: 163; exp: 33; iea: 115
annotation link
29GO:0006399 && GO:0000747tRNA metabolic process
conjugation with cellular fusion
pass0-
30GO:0006399 && GO:0000910tRNA metabolic process
cytokinesis
fail1all: 2; exp: 1; iea: 1
annotation link
31GO:0006399 && GO:0002181 && !(GO:0004812)tRNA metabolic process
cytoplasmic translation
!   aminoacyl-tRNA ligase activity
fail120not available due to size (>100)
32GO:0006399 && GO:0007010tRNA metabolic process
cytoskeleton organization
fail2all: 4; exp: 2; iea: 1
annotation link
33GO:0006399 && GO:0006091tRNA metabolic process
generation of precursor metabolites and energy
fail1all: 3; exp: 2; iea: 0
annotation link
34GO:0006399 && GO:0006629tRNA metabolic process
lipid metabolic process
fail4all: 25; exp: 18; iea: 1
annotation link
35GO:0006399 && GO:0007126tRNA metabolic process
GO:0007126
pass0-
36GO:0006399 && GO:0061024tRNA metabolic process
membrane organization
pass0-
37GO:0006399 && GO:0071941tRNA metabolic process
nitrogen cycle metabolic process
pass0-
38GO:0006399 && GO:0055086 && !(GO:0004820)tRNA metabolic process
nucleobase-containing small molecule metabolic process
!   glycine-tRNA ligase activity
fail143not available due to size (>100)
39GO:0006399 && GO:0006913tRNA metabolic process
nucleocytoplasmic transport
fail10all: 35; exp: 7; iea: 13
annotation link
40GO:0006399 && GO:0007031 && !(WB:WBGene00006946)tRNA metabolic process
peroxisome organization
!   WB:WBGene00006946
pass0-
41GO:0006399 && GO:0030163tRNA metabolic process
protein catabolic process
fail1all: 3; exp: 0; iea: 3
annotation link
42GO:0006399 && GO:0006461tRNA metabolic process
GO:0006461
pass0-
43GO:0006399 && GO:0006457tRNA metabolic process
protein folding
fail1all: 9; exp: 4; iea: 3
annotation link
44GO:0006399 && GO:0006486tRNA metabolic process
protein glycosylation
fail1all: 9; exp: 0; iea: 5
annotation link
45GO:0006399 && GO:0051604tRNA metabolic process
protein maturation
fail13all: 30; exp: 4; iea: 24
annotation link
46GO:0006399 && GO:0006605 && !(WB:WBGene00006946)tRNA metabolic process
protein targeting
!   WB:WBGene00006946
fail1all: 7; exp: 0; iea: 4
annotation link
47GO:0006399 && GO:1901990tRNA metabolic process
regulation of mitotic cell cycle phase transition
fail12all: 24; exp: 4; iea: 19
annotation link
48GO:0006399 && GO:0055085 && !(WB:WBGene00006946)tRNA metabolic process
transmembrane transport
!   WB:WBGene00006946
fail4all: 14; exp: 0; iea: 13
annotation link
49GO:0006399 && GO:0007033tRNA metabolic process
vacuole organization
pass0-
50GO:0006399 && GO:0016192tRNA metabolic process
vesicle-mediated transport
fail11all: 43; exp: 4; iea: 35
annotation link
51GO:0006399 && GO:0006766 && !(GO:0009982)tRNA metabolic process
vitamin metabolic process
!   pseudouridine synthase activity
fail4all: 15; exp: 2; iea: 12
annotation link
52GO:0002181 && GO:0006310cytoplasmic translation
DNA recombination
fail1all: 2; exp: 0; iea: 1
annotation link
53GO:0002181 && GO:0006281cytoplasmic translation
DNA repair
fail5all: 14; exp: 1; iea: 2
annotation link
54GO:0002181 && GO:0006260cytoplasmic translation
DNA replication
fail1all: 5; exp: 0; iea: 4
annotation link
55GO:0002181 && GO:0030437cytoplasmic translation
ascospore formation
pass0-
56GO:0002181 && GO:0005975cytoplasmic translation
carbohydrate metabolic process
pass0-
57GO:0002181 && GO:0007155cytoplasmic translation
cell adhesion
fail7all: 19; exp: 2; iea: 7
annotation link
58GO:0002181 && GO:0071554cytoplasmic translation
cell wall organization or biogenesis
pass0-
59GO:0002181 && GO:0006325cytoplasmic translation
chromatin organization
pass0-
60GO:0002181 && GO:0007059cytoplasmic translation
chromosome segregation
pass0-
61GO:0002181 && GO:0051186cytoplasmic translation
cofactor metabolic process
pass0-
62GO:0002181 && GO:0000747cytoplasmic translation
conjugation with cellular fusion
pass0-
63GO:0002181 && GO:0000910cytoplasmic translation
cytokinesis
pass0-
64GO:0002181 && GO:0007010cytoplasmic translation
cytoskeleton organization
fail12all: 25; exp: 1; iea: 23
annotation link
65GO:0002181 && GO:0006091cytoplasmic translation
generation of precursor metabolites and energy
pass0-
66GO:0002181 && GO:0006629cytoplasmic translation
lipid metabolic process
pass0-
67GO:0002181 && GO:0007126cytoplasmic translation
GO:0007126
pass0-
68GO:0002181 && GO:0071941cytoplasmic translation
nitrogen cycle metabolic process
pass0-
69GO:0002181 && GO:0055086 && !(GO:0004820)cytoplasmic translation
nucleobase-containing small molecule metabolic process
!   glycine-tRNA ligase activity
pass0-
70GO:0002181 && GO:0007031cytoplasmic translation
peroxisome organization
pass0-
71GO:0002181 && GO:0030163cytoplasmic translation
protein catabolic process
fail11all: 25; exp: 3; iea: 2
annotation link
72GO:0002181 && GO:0006461 && !(GO:0097010 || GO:0001731)cytoplasmic translation
GO:0006461
!   eukaryotic translation initiation factor 4F complex assembly
!   formation of translation preinitiation complex
pass0-
73GO:0002181 && GO:0006486cytoplasmic translation
protein glycosylation
pass0-
74GO:0002181 && GO:0051604cytoplasmic translation
protein maturation
fail1all: 3; exp: 2; iea: 0
annotation link
75GO:0002181 && GO:0006605 && !(WB:WBGene00006946)cytoplasmic translation
protein targeting
!   WB:WBGene00006946
fail37all: 86; exp: 25; iea: 10
annotation link
76GO:0002181 && GO:0055085cytoplasmic translation
transmembrane transport
fail4all: 11; exp: 2; iea: 3
annotation link
77GO:0002181 && GO:0007033cytoplasmic translation
vacuole organization
pass0-
78GO:0002181 && GO:0016192cytoplasmic translation
vesicle-mediated transport
fail18all: 44; exp: 8; iea: 3
annotation link
79GO:0002181 && GO:0006766cytoplasmic translation
vitamin metabolic process
pass0-
80GO:0042254 && GO:0030437ribosome biogenesis
ascospore formation
fail9all: 32; exp: 8; iea: 24
annotation link
81GO:0042254 && GO:0005975ribosome biogenesis
carbohydrate metabolic process
fail2all: 8; exp: 3; iea: 1
annotation link
82GO:0042254 && GO:0071554ribosome biogenesis
cell wall organization or biogenesis
fail14all: 42; exp: 12; iea: 28
annotation link
83GO:0042254 && GO:0051186ribosome biogenesis
cofactor metabolic process
fail16all: 48; exp: 7; iea: 23
annotation link
84GO:0042254 && GO:0000747ribosome biogenesis
conjugation with cellular fusion
pass0-
85GO:0042254 && GO:0000910ribosome biogenesis
cytokinesis
pass0-
86GO:0042254 && GO:0007126ribosome biogenesis
GO:0007126
pass0-
87GO:0042254 && GO:0055086ribosome biogenesis
nucleobase-containing small molecule metabolic process
fail30all: 94; exp: 14; iea: 40
annotation link
88GO:0042254 && GO:0006461ribosome biogenesis
GO:0006461
pass0-
89GO:0042254 && GO:0006457ribosome biogenesis
protein folding
fail50all: 184; exp: 23; iea: 74
annotation link
90GO:0042254 && GO:0006486ribosome biogenesis
protein glycosylation
pass0-
91GO:0042254 && GO:0051604ribosome biogenesis
protein maturation
fail10all: 25; exp: 7; iea: 10
annotation link
92GO:0042254 && GO:0055085ribosome biogenesis
transmembrane transport
fail10all: 26; exp: 8; iea: 9
annotation link
93GO:0042254 && GO:0007033ribosome biogenesis
vacuole organization
fail12all: 24; exp: 2; iea: 22
annotation link
94GO:0042254 && GO:0006766ribosome biogenesis
vitamin metabolic process
fail1all: 5; exp: 2; iea: 2
annotation link
95GO:0006260 && GO:0051186DNA replication
cofactor metabolic process
fail2all: 5; exp: 1; iea: 4
annotation link
96GO:0006260 && GO:0000747DNA replication
conjugation with cellular fusion
pass0-
97GO:0006260 && GO:0000910DNA replication
cytokinesis
fail23all: 64; exp: 10; iea: 52
annotation link
98GO:0006260 && GO:0006091DNA replication
generation of precursor metabolites and energy
fail18all: 56; exp: 12; iea: 26
annotation link
99GO:0006260 && GO:0006629DNA replication
lipid metabolic process
fail2all: 7; exp: 1; iea: 2
annotation link
100GO:0006260 && GO:0006913DNA replication
nucleocytoplasmic transport
fail16all: 69; exp: 14; iea: 9
annotation link
101GO:0006260 && GO:0007031DNA replication
peroxisome organization
fail1all: 3; exp: 0; iea: 3
annotation link
102GO:0006260 && GO:0006486DNA replication
protein glycosylation
pass0-
103GO:0006260 && GO:0051604DNA replication
protein maturation
fail21all: 43; exp: 2; iea: 38
annotation link
104GO:0006260 && GO:0006605DNA replication
protein targeting
fail1all: 3; exp: 0; iea: 3
annotation link
105GO:0006260 && GO:0055085DNA replication
transmembrane transport
fail3all: 12; exp: 1; iea: 7
annotation link
106GO:0006260 && GO:0006766DNA replication
vitamin metabolic process
fail8all: 20; exp: 0; iea: 20
annotation link
107GO:0006913 && GO:0055085nucleocytoplasmic transport
transmembrane transport
fail47all: 175; exp: 33; iea: 72
annotation link

Contact us

Copyright © 1999-2017 the Gene Ontology (CC-BY 4.0)
Helpdesk • Citation/attribution • Terms of use • RSS
Member of the Open Biological and Biomedical Ontologies
The Gene Ontology Consortium is supported by a P41 grant from the National Human Genome Research Institute (NHGRI) [grant 5U41HG002273-14]. The Gene Ontology Consortium would like to acknowledge the assistance of many more people than can be listed here. Please visit the acknowledgements page for the full list.