Table of contents

Summary

GAF summary

Found 1349 annotations in 1357 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000007 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000007) IPI should not be used with catalytic activity molecular function terms, there is one violation with type Warning.

GAF Prediction Summary

Found 23 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf

Report

Group: sgn - Dataset: sgn

SUMMARY

This report generated on 2018-12-17

Contents

gorule-0000008

gorule-0000016

gorule-0000020

other

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000016

With/From: IC annotations require a With/From GO ID

Messages

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

other

OWLTools check

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #1349 annotations in 1357 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000007 IPI should not be used with catalytic activity molecular function terms Warning count: 1
74 GO_AR:0000007 Warning IPI should not be used with catalytic activity molecular function terms SGN 5257 pmt GO:0030750 PMID:17221359 IPI NCBI_gi:86438859 F putrescine N-methyltransferase Solyc06g053510 gene taxon:4081 20090625 SGN
#------------

Predictions

GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0045544 gibberellin 20-oxidase activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0045552 dihydrokaempferol 4-reductase activity ISS
GO:0010951 negative regulation of endopeptidase activity AnnotationPropagation P GO:0004869 cysteine-type endopeptidase inhibitor activity IDA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0033744 L-methionine:thioredoxin-disulfide S-oxidoreductase activity IDA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0045544 gibberellin 20-oxidase activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0010466 negative regulation of peptidase activity AnnotationPropagation P GO:0030414 peptidase inhibitor activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004784 superoxide dismutase activity IDA
GO:0019430 removal of superoxide radicals AnnotationPropagation P GO:0004784 superoxide dismutase activity IDA
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IDA
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0004672 protein kinase activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0008234 cysteine-type peptidase activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0032259 methylation AnnotationPropagation P GO:0016206 catechol O-methyltransferase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0045544 gibberellin 20-oxidase activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0016209 antioxidant activity IDA
GO:0000165 MAPK cascade AnnotationPropagation P GO:0004707 MAP kinase activity IDA

Predictions (experimental)