Table of contents

Report

Group: pseudocap - Dataset: pseudocap

SUMMARY

This report generated on 2020-07-03

Header From Original Association File

!gaf-version: 2.0

Contents

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gorule-0000008

gorule-0000011

gorule-0000013

gorule-0000015

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gorule-0000017

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gorule-0000020

gorule-0000027

gorule-0000028

gorule-0000029

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other

MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.1 specifications

Messages

gorule-0000002

No 'NOT' annotations to 'protein binding ; GO:0005515'

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

gorule-0000013

Taxon-appropriate annotation check

Messages

gorule-0000015

Dual species taxon check

gorule-0000016

With/From: IC annotations require a With/From GO ID

gorule-0000017

IDA annotations must not have a With/From entry

gorule-0000018

IPI annotations require a With/From entry

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

gorule-0000027

Each identifier in GAF is valid

Messages

gorule-0000028

Aspect can only be one of C, P, F and should be repaired using the GO term

gorule-0000029

IEAs should be less than one year old.

Messages

gorule-0000030

Deprecated GO_REFs are not allowed

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

gorule-0000043

Check for valid combination of evidence code and GO_REF

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

gorule-0000057

Group specific filter rules should be applied to annotations

gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

other

Predictions

GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISS
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity ISS
GO:0006417 regulation of translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008115 sarcosine oxidase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003959 NADPH dehydrogenase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008234 cysteine-type peptidase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008785 alkyl hydroperoxide reductase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0050421 nitrite reductase (NO-forming) activity TAS
GO:0098655 cation transmembrane transport AnnotationPropagation P GO:0031459 ATPase-coupled glycine betaine transporter activity ISO
GO:0031460 glycine betaine transport AnnotationPropagation P GO:0031459 ATPase-coupled glycine betaine transporter activity ISO
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004109 coproporphyrinogen oxidase activity IGI
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISS
GO:0035351 heme transmembrane transport AnnotationPropagation P GO:0015439 ATPase-coupled heme transmembrane transporter activity ISS
GO:0098655 cation transmembrane transport AnnotationPropagation P GO:0031459 ATPase-coupled glycine betaine transporter activity IDA
GO:0031460 glycine betaine transport AnnotationPropagation P GO:0031459 ATPase-coupled glycine betaine transporter activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0018580 nitronate monooxygenase activity IDA
GO:0006591 ornithine metabolic process AnnotationPropagation P GO:0004585 ornithine carbamoyltransferase activity IMP
GO:0018101 protein citrullination AnnotationPropagation P GO:0016990 arginine deiminase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IDA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IDA
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IDA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004747 ribokinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004090 carbonyl reductase (NADPH) activity IDA
GO:0016310 phosphorylation AnnotationPropagation P GO:0033862 UMP kinase activity ISS
GO:0046940 nucleoside monophosphate phosphorylation AnnotationPropagation P GO:0033862 UMP kinase activity ISS
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:0035672 oligopeptide transmembrane transport AnnotationPropagation P GO:0035673 oligopeptide transmembrane transporter activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008379 thioredoxin peroxidase activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0008379 thioredoxin peroxidase activity IDA
GO:0016310 phosphorylation AnnotationPropagation P GO:0008531 riboflavin kinase activity ISS
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IDA
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0036397 formate dehydrogenase (quinone) activity IDA
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0004518 nuclease activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IDA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IDA
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IDA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity IMP
GO:0016310 phosphorylation AnnotationPropagation P GO:0016301 kinase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008115 sarcosine oxidase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008115 sarcosine oxidase activity IMP
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IMP
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IMP
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IMP
GO:0006508 proteolysis AnnotationPropagation P GO:0008239 dipeptidyl-peptidase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008470 isovaleryl-CoA dehydrogenase activity IDA
GO:0016311 dephosphorylation AnnotationPropagation P GO:0016791 phosphatase activity IDA
GO:2000142 regulation of DNA-templated transcription, initiation AnnotationPropagation P GO:0016987 sigma factor activity IPI
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016691 chloride peroxidase activity ISS
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0016691 chloride peroxidase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity IGI
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IMP
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004733 pyridoxamine-phosphate oxidase activity ISS
GO:0042823 pyridoxal phosphate biosynthetic process AnnotationPropagation P GO:0004733 pyridoxamine-phosphate oxidase activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISS
GO:0050790 regulation of catalytic activity AnnotationPropagation P GO:0030337 DNA polymerase processivity factor activity ISS
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0030337 DNA polymerase processivity factor activity ISS
GO:0016310 phosphorylation AnnotationPropagation P GO:0016301 kinase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008237 metallopeptidase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0004177 aminopeptidase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008940 nitrate reductase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008115 sarcosine oxidase activity IMP
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0008855 exodeoxyribonuclease VII activity ISS
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0008855 exodeoxyribonuclease VII activity ISS
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0004536 deoxyribonuclease activity ISS
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0004536 deoxyribonuclease activity ISS
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0003887 DNA-directed DNA polymerase activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IGC
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IGC
GO:0006470 protein dephosphorylation AnnotationPropagation P GO:0004722 protein serine/threonine phosphatase activity IDA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004340 glucokinase activity ISS
GO:0051156 glucose 6-phosphate metabolic process AnnotationPropagation P GO:0004340 glucokinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004148 dihydrolipoyl dehydrogenase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008237 metallopeptidase activity ISS
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity IPI
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0015689 molybdate ion transport AnnotationPropagation P GO:0015098 molybdate ion transmembrane transporter activity ISS
GO:0098656 anion transmembrane transport AnnotationPropagation P GO:0015098 molybdate ion transmembrane transporter activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IDA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IDA
GO:0006479 protein methylation AnnotationPropagation P GO:0008276 protein methyltransferase activity ISS
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0004519 endonuclease activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008718 D-amino-acid dehydrogenase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003955 NAD(P)H dehydrogenase (quinone) activity IMP
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008237 metallopeptidase activity ISS
GO:0022900 electron transport chain AnnotationPropagation P GO:0009055 electron transfer activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IDA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003960 NADPH:quinone reductase activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0008233 peptidase activity IDA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0034061 DNA polymerase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IDA
GO:0090501 RNA phosphodiester bond hydrolysis AnnotationPropagation P GO:0004540 ribonuclease activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IMP
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IMP
GO:0006508 proteolysis AnnotationPropagation P GO:0008237 metallopeptidase activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISS
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity IMP
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0016310 phosphorylation AnnotationPropagation P GO:0009030 thiamine-phosphate kinase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0004177 aminopeptidase activity ISS
GO:0035434 copper ion transmembrane transport AnnotationPropagation P GO:0005375 copper ion transmembrane transporter activity ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008113 peptide-methionine (S)-S-oxide reductase activity ISS
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008831 dTDP-4-dehydrorhamnose reductase activity ISS
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0034061 DNA polymerase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0000104 succinate dehydrogenase activity IGI
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004459 L-lactate dehydrogenase activity IGI
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0018467 formaldehyde dehydrogenase activity ISS
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003955 NAD(P)H dehydrogenase (quinone) activity IMP
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0000104 succinate dehydrogenase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ISS
GO:0098655 cation transmembrane transport AnnotationPropagation P GO:0031459 ATPase-coupled glycine betaine transporter activity IDA
GO:0031460 glycine betaine transport AnnotationPropagation P GO:0031459 ATPase-coupled glycine betaine transporter activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004096 catalase activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004130 cytochrome-c peroxidase activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004130 cytochrome-c peroxidase activity IDA
GO:0016310 phosphorylation AnnotationPropagation P GO:0004756 selenide, water dikinase activity ISS
GO:0071805 potassium ion transmembrane transport AnnotationPropagation P GO:0015503 glutathione-regulated potassium exporter activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0015045 rubredoxin-NAD(P)+ reductase activity IGI
GO:0006508 proteolysis AnnotationPropagation P GO:0008237 metallopeptidase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008234 cysteine-type peptidase activity ISS
GO:0022900 electron transport chain AnnotationPropagation P GO:0009055 electron transfer activity IGI
GO:2000142 regulation of DNA-templated transcription, initiation AnnotationPropagation P GO:0016987 sigma factor activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0050049 leucine dehydrogenase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004096 catalase activity IMP
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004399 histidinol dehydrogenase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0004252 serine-type endopeptidase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004497 monooxygenase activity IDA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015288 porin activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003955 NAD(P)H dehydrogenase (quinone) activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008677 2-dehydropantoate 2-reductase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IDA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IDA
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008940 nitrate reductase activity ISS
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic AnnotationPropagation P GO:0004526 ribonuclease P activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008718 D-amino-acid dehydrogenase activity IDA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0004530 deoxyribonuclease I activity ISS
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0004530 deoxyribonuclease I activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0047866 dimethylglycine oxidase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0042602 riboflavin reductase (NADPH) activity ISS
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0009703 nitrate reductase (NADH) activity ISS
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic AnnotationPropagation P GO:0004523 RNA-DNA hybrid ribonuclease activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003954 NADH dehydrogenase activity EXP
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0036397 formate dehydrogenase (quinone) activity IDA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity ISS
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity ISS
GO:0000413 protein peptidyl-prolyl isomerization AnnotationPropagation P GO:0003755 peptidyl-prolyl cis-trans isomerase activity ISS
GO:0000162 tryptophan biosynthetic process AnnotationPropagation P GO:0004834 tryptophan synthase activity ISS
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity IDA
GO:0019344 cysteine biosynthetic process AnnotationPropagation P GO:0004124 cysteine synthase activity ISS
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0006508 proteolysis AnnotationPropagation P GO:0008239 dipeptidyl-peptidase activity ISS
GO:0022900 electron transport chain AnnotationPropagation P GO:0009055 electron transfer activity IGI
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004096 catalase activity ISS
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity ISS
GO:0016310 phosphorylation AnnotationPropagation P GO:0008804 carbamate kinase activity IMP
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0004674 protein serine/threonine kinase activity IDA
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity NAS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0036397 formate dehydrogenase (quinone) activity IDA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISS
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity NAS
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0015035 protein disulfide oxidoreductase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008670 2,4-dienoyl-CoA reductase (NADPH) activity ISS
GO:0030488 tRNA methylation AnnotationPropagation P GO:0030697 S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity ISS
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity NAS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004459 L-lactate dehydrogenase activity IGI
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0016311 dephosphorylation AnnotationPropagation P GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity ISS
GO:0035672 oligopeptide transmembrane transport AnnotationPropagation P GO:0035673 oligopeptide transmembrane transporter activity IMP
GO:0006165 nucleoside diphosphate phosphorylation AnnotationPropagation P GO:0004550 nucleoside diphosphate kinase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004354 glutamate dehydrogenase (NADP+) activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004764 shikimate 3-dehydrogenase (NADP+) activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0008320 protein transmembrane transporter activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0051213 dioxygenase activity ISS
GO:0006412 translation AnnotationPropagation P GO:0003743 translation initiation factor activity ISS
GO:0006413 translational initiation AnnotationPropagation P GO:0003743 translation initiation factor activity ISS
GO:0006417 regulation of translation AnnotationPropagation P GO:0003743 translation initiation factor activity ISS
GO:2000142 regulation of DNA-templated transcription, initiation AnnotationPropagation P GO:0016987 sigma factor activity IDA
GO:0035672 oligopeptide transmembrane transport AnnotationPropagation P GO:0035673 oligopeptide transmembrane transporter activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008113 peptide-methionine (S)-S-oxide reductase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0015035 protein disulfide oxidoreductase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003955 NAD(P)H dehydrogenase (quinone) activity IMP
GO:0016310 phosphorylation AnnotationPropagation P GO:0004140 dephospho-CoA kinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0015036 disulfide oxidoreductase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004096 catalase activity IMP
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016618 hydroxypyruvate reductase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004497 monooxygenase activity IDA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0008853 exodeoxyribonuclease III activity ISS
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0008853 exodeoxyribonuclease III activity ISS
GO:0016310 phosphorylation AnnotationPropagation P GO:0004349 glutamate 5-kinase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008233 peptidase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008234 cysteine-type peptidase activity ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0047866 dimethylglycine oxidase activity IDA
GO:0015813 L-glutamate transmembrane transport AnnotationPropagation P GO:0005313 L-glutamate transmembrane transporter activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IDA
GO:0016311 dephosphorylation AnnotationPropagation P GO:0008962 phosphatidylglycerophosphatase activity ISS
GO:0000162 tryptophan biosynthetic process AnnotationPropagation P GO:0004834 tryptophan synthase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0004180 carboxypeptidase activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016631 enoyl-[acyl-carrier-protein] reductase activity IDA
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004109 coproporphyrinogen oxidase activity IGI
GO:0006508 proteolysis AnnotationPropagation P GO:0008233 peptidase activity ISS
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISS
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity ISS
GO:0006417 regulation of translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISS
GO:0009086 methionine biosynthetic process AnnotationPropagation P GO:0008705 methionine synthase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008233 peptidase activity IDA
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IDA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008238 exopeptidase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0051213 dioxygenase activity IMP
GO:0015689 molybdate ion transport AnnotationPropagation P GO:0015412 ATPase-coupled molybdate transmembrane transporter activity ISS
GO:0098656 anion transmembrane transport AnnotationPropagation P GO:0015412 ATPase-coupled molybdate transmembrane transporter activity ISS
GO:0032774 RNA biosynthetic process AnnotationPropagation P GO:0003899 DNA-directed 5'-3' RNA polymerase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016491 oxidoreductase activity IDA
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0003678 DNA helicase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008940 nitrate reductase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004833 tryptophan 2,3-dioxygenase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISA
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015474 autotransporter activity IDA
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003955 NAD(P)H dehydrogenase (quinone) activity IMP
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0008855 exodeoxyribonuclease VII activity ISS
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0008855 exodeoxyribonuclease VII activity ISS

Predictions (experimental)