Table of contents

Summary

GAF summary

Found 3665 annotations in 3670 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000014 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000014) Valid GO term ID, there is one violation with type Error.

For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008) No annotations should be made to uninformative high level terms, there are 25 violations with type Warning.

For rule GO_AR:0000014 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000014) Valid GO term ID, there are 25 violations with type Warning.

GAF Prediction Summary

Found 340 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf

Report

SUMMARY

STATISTICS

MESSAGES

WARNING

OWLTools check

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #3665 annotations in 3670 lines
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#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000014 Valid GO term ID Error count: 1
1927 GO_AR:0000014 Error The id 'GO:0030803' in the annotation is an obsolete class PseudoCAP PA3385 amrZ GO:0030803 PMID:24603766 IMP P alginate and motility regulator Z algZ|AlgZ protein taxon:208964 20161012 PseudoCAP
#------------
# GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 25
634 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA1338 ggt GO:0050896 PMID:2892489 ISS P gamma-glutamyltranspeptidase precursor protein taxon:208964 20161012 PseudoCAP
1286 GO_AR:0000008 Warning Do not annotate to: GO:0048583 'regulation of response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA2277 arsR GO:0048583 PMID:9802012 ISA UniProtKB:P37309 P ArsR protein protein taxon:208964 20161012 PseudoCAP
1324 GO_AR:0000008 Warning Do not annotate to: GO:0048518 'positive regulation of biological process' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA2387 fpvI GO:0048518 PMID:12562796 IMP P FpvI protein taxon:208964 20161012 PseudoCAP
1497 GO_AR:0000008 Warning Do not annotate to: GO:0006928 'movement of cell or subcellular component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA2570 lecA GO:0006928 PMID:16689730 IDA P LecA pa1L|PA-I galactophilic lectin|lecA (changed from pa1L)|LecA (changed from PA-I galactophilic lectin) protein taxon:208964 20161012 PseudoCAP
1660 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA2924 hisQ GO:0006810 PMID:1733937 ISS P histidine transport system permease HisQ protein taxon:208964 20161012 PseudoCAP
1786 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3153 wzx GO:0006810 PMID:9922263 IDA P O-antigen translocase rfbX|wbpF|O-antigen flippase protein taxon:208964 20161012 PseudoCAP
1916 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3382 phnE GO:0006810 PMID:2155230 ISS P phosphonate transport protein PhnE protein taxon:208964 20161012 PseudoCAP
1938 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3406 hasD GO:0006810 PMID:9244262 ISS P transport protein HasD protein taxon:208964 20161012 PseudoCAP
1978 GO_AR:0000008 Warning Do not annotate to: GO:0009607 'response to biotic stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3540 algD GO:0009607 PMID:18455339 IDA P GDP-mannose 6-dehydrogenase AlgD protein taxon:208964 20161012 PseudoCAP
1979 GO_AR:0000008 Warning Do not annotate to: GO:0009628 'response to abiotic stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3540 algD GO:0009628 PMID:24496793 IDA P GDP-mannose 6-dehydrogenase AlgD protein taxon:208964 20161012 PseudoCAP
1985 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3541 alg8 GO:0050896 PMID:8294014 ISS P alginate biosynthesis protein Alg8 protein taxon:208964 20161012 PseudoCAP
1994 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3543 algK GO:0042710 PMID:9457868 IDA P alginate biosynthetic protein AlgK precursor protein taxon:208964 20161012 PseudoCAP
1998 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3544 algE GO:0050896 PMID:10411261 ISS P Alginate production outer membrane protein AlgE precursor alg76|alginate production protein AlgE protein taxon:208964 20161012 PseudoCAP
2001 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3545 algG GO:0050896 PMID:8144447 IDA P alginate-c5-mannuronan-epimerase AlgG protein taxon:208964 20161012 PseudoCAP
2006 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3546 algX GO:0050896 PMID:15489449 IDA P alginate biosynthesis protein AlgX protein taxon:208964 20161012 PseudoCAP
2010 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3547 algL GO:0050896 PMID:8370530 IDA P poly(beta-d-mannuronate) lyase precursor AlgL Alginate lyase (AlgL) protein taxon:208964 20161012 PseudoCAP
2015 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3549 algJ GO:0050896 PMID:8636017 IDA P alginate o-acetyltransferase AlgJ protein taxon:208964 20161012 PseudoCAP
2018 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3550 algF GO:0050896 PMID:7934909 IDA P alginate o-acetyltransferase AlgF protein taxon:208964 20161012 PseudoCAP
2037 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3563 fruR GO:0006810 PMID:9237914 ISS P fructose transport system repressor FruR protein taxon:208964 20161012 PseudoCAP
2169 GO_AR:0000008 Warning Do not annotate to: GO:0006928 'movement of cell or subcellular component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3805 pilF GO:0006928 PMID:23547883 IMP P type 4 fimbrial biogenesis protein PilF pilin biosynthetic gene PilF protein taxon:208964 20161012 PseudoCAP
2314 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA4110 ampC GO:0050896 PMID:8405939 IDA P beta-lactamase precursor cephalosporinase protein taxon:208964 20161012 PseudoCAP
2552 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA4521 ampE GO:0050896 PMID:9835532 IMP P AmpE protein taxon:208964 20161012 PseudoCAP
2654 GO_AR:0000008 Warning Do not annotate to: GO:0097312 'bacterial biofilm matrix component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA4625 cdrA GO:0097312 PMID:20088866 IDA C cyclic diguanylate-regulated TPS partner A, CdrA protein taxon:208964 20161012 PseudoCAP
2723 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA4706 phuV GO:0006810 PMID:10658665 IMP P PhuV protein taxon:208964 20161012 PseudoCAP
2724 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA4707 phuU GO:0006810 PMID:10658665 IMP P PhuU protein taxon:208964 20161012 PseudoCAP
#------------
# GO_AR:0000014 Valid GO term ID Warning count: 25
302 GO_AR:0000014 Warning The id 'GO:1903809' in the annotation is an alternate id for: GO:1904271 PseudoCAP PA0783 putP GO:1903809 PMID:18833300 IMP P sodium/proline symporter PutP protein taxon:208964 20161012 PseudoCAP
347 GO_AR:0000014 Warning The id 'GO:1902765' in the annotation is an alternate id for: GO:0097638 PseudoCAP PA0888 aotJ GO:1902765 PMID:18833300 IMP P arginine/ornithine binding protein AotJ protein taxon:208964 20161012 PseudoCAP
348 GO_AR:0000014 Warning The id 'GO:1903411' in the annotation is an alternate id for: GO:0097640 PseudoCAP PA0888 aotJ GO:1903411 PMID:18833300 IMP P arginine/ornithine binding protein AotJ protein taxon:208964 20161012 PseudoCAP
351 GO_AR:0000014 Warning The id 'GO:1902765' in the annotation is an alternate id for: GO:0097638 PseudoCAP PA0889 aotQ GO:1902765 PMID:18833300 IMP P arginine/ornithine transport protein AotQ protein taxon:208964 20161012 PseudoCAP
352 GO_AR:0000014 Warning The id 'GO:1903411' in the annotation is an alternate id for: GO:0097640 PseudoCAP PA0889 aotQ GO:1903411 PMID:18833300 IMP P arginine/ornithine transport protein AotQ protein taxon:208964 20161012 PseudoCAP
355 GO_AR:0000014 Warning The id 'GO:1902765' in the annotation is an alternate id for: GO:0097638 PseudoCAP PA0890 aotM GO:1902765 PMID:18833300 IMP P arginine/ornithine transport protein AotM protein taxon:208964 20161012 PseudoCAP
356 GO_AR:0000014 Warning The id 'GO:1903411' in the annotation is an alternate id for: GO:0097640 PseudoCAP PA0890 aotM GO:1903411 PMID:18833300 IMP P arginine/ornithine transport protein AotM protein taxon:208964 20161012 PseudoCAP
359 GO_AR:0000014 Warning The id 'GO:1902765' in the annotation is an alternate id for: GO:0097638 PseudoCAP PA0892 aotP GO:1902765 PMID:18833300 IMP P arginine/ornithine transport protein AotP protein taxon:208964 20161012 PseudoCAP
360 GO_AR:0000014 Warning The id 'GO:1903411' in the annotation is an alternate id for: GO:0097640 PseudoCAP PA0892 aotP GO:1903411 PMID:18833300 IMP P arginine/ornithine transport protein AotP protein taxon:208964 20161012 PseudoCAP
1019 GO_AR:0000014 Warning The id 'GO:0015198' in the annotation is an alternate id for: GO:0035673 PseudoCAP PA1807 nppD GO:0015198 PMID:23979749 IMP F NppD probable ATP-binding component of ABC transporter|oppE protein taxon:208964 20161012 PseudoCAP
1023 GO_AR:0000014 Warning The id 'GO:0015198' in the annotation is an alternate id for: GO:0035673 PseudoCAP PA1810 nppA2 GO:0015198 PMID:23979749 IMP F NppA2 probable binding protein component of ABC transporter|oppB protein taxon:208964 20161012 PseudoCAP
1025 GO_AR:0000014 Warning The id 'GO:0015198' in the annotation is an alternate id for: GO:0035673 PseudoCAP PA1811 nppA1 GO:0015198 PMID:23979749 IMP F NppA1 probable solute-binding protein|oppA protein taxon:208964 20161012 PseudoCAP
1302 GO_AR:0000014 Warning The id 'GO:0015725' in the annotation is an alternate id for: GO:0035429 PseudoCAP PA2322 PA2322 GO:0015725 PMID:9045817 ISS P gluconate permease gntU|gntT|gnuT protein taxon:208964 20161012 PseudoCAP
1796 GO_AR:0000014 Warning The id 'GO:0015992' in the annotation is an alternate id for: GO:1902600 PseudoCAP PA3153 wzx GO:0015992 PMID:24023388 IDA P O-antigen translocase rfbX|wbpF|O-antigen flippase protein taxon:208964 20161012 PseudoCAP
2518 GO_AR:0000014 Warning The id 'GO:0042936' in the annotation is an alternate id for: GO:0071916 PseudoCAP PA4496 dppA1 GO:0042936 PMID:25338022 IDA F probable binding protein component of ABC transporter protein taxon:208964 20161012 PseudoCAP
2521 GO_AR:0000014 Warning The id 'GO:0042936' in the annotation is an alternate id for: GO:0071916 PseudoCAP PA4497 dppA2 GO:0042936 PMID:25338022 IDA F probable binding protein component of ABC transporter protein taxon:208964 20161012 PseudoCAP
2527 GO_AR:0000014 Warning The id 'GO:0042936' in the annotation is an alternate id for: GO:0071916 PseudoCAP PA4500 dppA3 GO:0042936 PMID:25338022 IDA F probable binding protein component of ABC transporter protein taxon:208964 20161012 PseudoCAP
2531 GO_AR:0000014 Warning The id 'GO:0042936' in the annotation is an alternate id for: GO:0071916 PseudoCAP PA4501 opdD GO:0042936 PMID:25338022 IDA F Glycine-glutamate dipeptide porin OpdP opdP|Glycine-glutamate dipeptide porin OpdP protein taxon:208964 20161012 PseudoCAP
2532 GO_AR:0000014 Warning The id 'GO:0042936' in the annotation is an alternate id for: GO:0071916 PseudoCAP PA4502 dppA4 GO:0042936 PMID:25338022 IDA F probable binding protein component of ABC transporter protein taxon:208964 20161012 PseudoCAP
2558 GO_AR:0000014 Warning The id 'GO:0016337' in the annotation is an alternate id for: GO:0098609 PseudoCAP PA4525 pilA GO:0016337 PMID:2897336 IDA P type 4 fimbrial precursor PilA type IV pilin protein taxon:208964 20161012 PseudoCAP
2632 GO_AR:0000014 Warning The id 'GO:0000975' in the annotation is an alternate id for: GO:0044212 PseudoCAP PA4596 esrC GO:0000975 PMID:25143244 IDA F EsrC protein taxon:208964 20161012 PseudoCAP
3187 GO_AR:0000014 Warning The id 'GO:1903411' in the annotation is an alternate id for: GO:0097640 PseudoCAP PA5153 PA5153 GO:1903411 PMID:18833300 IMP P amino acid (lysine/arginine/ornithine/histidine/octopine) ABC transporter periplasmic binding protein protein taxon:208964 20161012 PseudoCAP
3188 GO_AR:0000014 Warning The id 'GO:1903411' in the annotation is an alternate id for: GO:0097640 PseudoCAP PA5155 PA5155 GO:1903411 PMID:18833300 IMP P amino acid (lysine/arginine/ornithine/histidine/octopine) ABC transporter membrane protein protein taxon:208964 20161012 PseudoCAP
3331 GO_AR:0000014 Warning The id 'GO:0042936' in the annotation is an alternate id for: GO:0071916 PseudoCAP PA5317 dppA5 GO:0042936 PMID:25338022 IDA F probable binding protein component of ABC dipeptide transporter protein taxon:208964 20161012 PseudoCAP
3621 GO_AR:0000014 Warning The id 'GO:0015683' in the annotation is an alternate id for: GO:0098706 PseudoCAP PA5531 tonB1 GO:0015683 PMID:10899848 IMP P TonB1 tonB|TonB protein taxon:208964 20161012 PseudoCAP
#------------

Predictions

GO:0005622 intracellular AnnotationPropagation C GO:0007234 osmosensory signaling via phosphorelay pathway ISS
GO:0016310 phosphorylation AnnotationPropagation P GO:0033862 UMP kinase activity ISS
GO:0046940 nucleoside monophosphate phosphorylation AnnotationPropagation P GO:0033862 UMP kinase activity ISS
GO:0032259 methylation AnnotationPropagation P GO:0008757 S-adenosylmethionine-dependent methyltransferase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008237 metallopeptidase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016691 chloride peroxidase activity ISS
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0016691 chloride peroxidase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004354 glutamate dehydrogenase (NADP+) activity ISS
GO:0005623 cell AnnotationPropagation C GO:0045454 cell redox homeostasis ISS
GO:0006855 drug transmembrane transport AnnotationPropagation P GO:0015238 drug transmembrane transporter activity IMP
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0004536 deoxyribonuclease activity ISS
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0004536 deoxyribonuclease activity ISS
GO:0032259 methylation AnnotationPropagation P GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IDA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IDA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IDA
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IDA
GO:0022900 electron transport chain AnnotationPropagation P GO:0009055 electron transfer activity IGI
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase activity, coupled to transmembrane movement of substances ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0004177 aminopeptidase activity ISS
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity NAS
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015474 autotransporter activity IDA
GO:0000162 tryptophan biosynthetic process AnnotationPropagation P GO:0004834 tryptophan synthase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0000721 (R,R)-butanediol dehydrogenase activity ISS
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003954 NADH dehydrogenase activity EXP
GO:0016310 phosphorylation AnnotationPropagation P GO:0050515 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity ISS
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0008855 exodeoxyribonuclease VII activity ISS
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0008855 exodeoxyribonuclease VII activity ISS
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity NAS
GO:0032259 methylation AnnotationPropagation P GO:0008168 methyltransferase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004399 histidinol dehydrogenase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008236 serine-type peptidase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008670 2,4-dienoyl-CoA reductase (NADPH) activity ISS
GO:0006855 drug transmembrane transport AnnotationPropagation P GO:0015238 drug transmembrane transporter activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity IGI
GO:0035434 copper ion transmembrane transport AnnotationPropagation P GO:0005375 copper ion transmembrane transporter activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004109 coproporphyrinogen oxidase activity IGI
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0008853 exodeoxyribonuclease III activity ISS
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0008853 exodeoxyribonuclease III activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004096 catalase activity IMP
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity IMP
GO:0006096 glycolytic process AnnotationPropagation P GO:0004743 pyruvate kinase activity ISS
GO:0006355 regulation of transcription, DNA-templated AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IDA
GO:0016310 phosphorylation AnnotationPropagation P GO:0016301 kinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004764 shikimate 3-dehydrogenase (NADP+) activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008234 cysteine-type peptidase activity ISS
GO:0032259 methylation AnnotationPropagation P GO:0008705 methionine synthase activity ISS
GO:0009086 methionine biosynthetic process AnnotationPropagation P GO:0008705 methionine synthase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISS
GO:0006855 drug transmembrane transport AnnotationPropagation P GO:0015238 drug transmembrane transporter activity IGC
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase activity, coupled to transmembrane movement of substances ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0047866 dimethylglycine oxidase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0015035 protein disulfide oxidoreductase activity ISS
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISS
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity ISS
GO:0015837 amine transport AnnotationPropagation P GO:0031459 glycine betaine-transporting ATPase activity IDA
GO:0031460 glycine betaine transport AnnotationPropagation P GO:0031459 glycine betaine-transporting ATPase activity IDA
GO:0072488 ammonium transmembrane transport AnnotationPropagation P GO:0031459 glycine betaine-transporting ATPase activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0008233 peptidase activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0004180 carboxypeptidase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003955 NAD(P)H dehydrogenase (quinone) activity IMP
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004340 glucokinase activity ISS
GO:0051156 glucose 6-phosphate metabolic process AnnotationPropagation P GO:0004340 glucokinase activity ISS
GO:0016310 phosphorylation AnnotationPropagation P GO:0004349 glutamate 5-kinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008113 peptide-methionine (S)-S-oxide reductase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IDA
GO:0005623 cell AnnotationPropagation C GO:0006882 cellular zinc ion homeostasis IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0036397 formate dehydrogenase (quinone) activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0008239 dipeptidyl-peptidase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008115 sarcosine oxidase activity IMP
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic AnnotationPropagation P GO:0004523 RNA-DNA hybrid ribonuclease activity ISS
GO:0099131 ATP hydrolysis coupled ion transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0099132 ATP hydrolysis coupled cation transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004355 glutamate synthase (NADPH) activity ISS
GO:0006855 drug transmembrane transport AnnotationPropagation P GO:0015238 drug transmembrane transporter activity IDA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IDA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0016310 phosphorylation AnnotationPropagation P GO:0004756 selenide, water dikinase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008233 peptidase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0005622 intracellular AnnotationPropagation C GO:0000160 phosphorelay signal transduction system IDA
GO:2000142 regulation of DNA-templated transcription, initiation AnnotationPropagation P GO:0016987 sigma factor activity IDA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IDA
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IDA
GO:0006855 drug transmembrane transport AnnotationPropagation P GO:0015238 drug transmembrane transporter activity IDA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015439 heme-transporting ATPase activity ISS
GO:0015886 heme transport AnnotationPropagation P GO:0015439 heme-transporting ATPase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008237 metallopeptidase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008470 isovaleryl-CoA dehydrogenase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016618 hydroxypyruvate reductase activity ISS
GO:2000142 regulation of DNA-templated transcription, initiation AnnotationPropagation P GO:0016987 sigma factor activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008940 nitrate reductase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003955 NAD(P)H dehydrogenase (quinone) activity IMP
GO:0015689 molybdate ion transport AnnotationPropagation P GO:0015098 molybdate ion transmembrane transporter activity ISS
GO:0098656 anion transmembrane transport AnnotationPropagation P GO:0015098 molybdate ion transmembrane transporter activity ISS
GO:0015813 L-glutamate transmembrane transport AnnotationPropagation P GO:0005313 L-glutamate transmembrane transporter activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003955 NAD(P)H dehydrogenase (quinone) activity IMP
GO:2000142 regulation of DNA-templated transcription, initiation AnnotationPropagation P GO:0016987 sigma factor activity IPI
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0099131 ATP hydrolysis coupled ion transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0099132 ATP hydrolysis coupled cation transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0036397 formate dehydrogenase (quinone) activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004096 catalase activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity IDA
GO:0019344 cysteine biosynthetic process AnnotationPropagation P GO:0004124 cysteine synthase activity ISS
GO:0071805 potassium ion transmembrane transport AnnotationPropagation P GO:0015503 glutathione-regulated potassium exporter activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008234 cysteine-type peptidase activity ISS
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0004519 endonuclease activity ISS
GO:0005622 intracellular AnnotationPropagation C GO:0000160 phosphorelay signal transduction system ISS
GO:0006412 translation AnnotationPropagation P GO:0003743 translation initiation factor activity ISS
GO:0006413 translational initiation AnnotationPropagation P GO:0003743 translation initiation factor activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016631 enoyl-[acyl-carrier-protein] reductase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0050049 leucine dehydrogenase activity ISS
GO:0016310 phosphorylation AnnotationPropagation P GO:0016301 kinase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004130 cytochrome-c peroxidase activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004130 cytochrome-c peroxidase activity IDA
GO:0022900 electron transport chain AnnotationPropagation P GO:0009055 electron transfer activity IGI
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0050421 nitrite reductase (NO-forming) activity TAS
GO:0006855 drug transmembrane transport AnnotationPropagation P GO:0015238 drug transmembrane transporter activity IDA
GO:0016310 phosphorylation AnnotationPropagation P GO:0008531 riboflavin kinase activity ISS
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0008320 protein transmembrane transporter activity IMP
GO:0016311 dephosphorylation AnnotationPropagation P GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004096 catalase activity ISS
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity ISS
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008940 nitrate reductase activity ISS
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0015036 disulfide oxidoreductase activity ISS
GO:0030488 tRNA methylation AnnotationPropagation P GO:0030697 S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity ISS
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0006479 protein methylation AnnotationPropagation P GO:0008276 protein methyltransferase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008677 2-dehydropantoate 2-reductase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008785 alkyl hydroperoxide reductase activity IDA
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0004674 protein serine/threonine kinase activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0008237 metallopeptidase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003959 NADPH dehydrogenase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISS
GO:0099131 ATP hydrolysis coupled ion transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0099132 ATP hydrolysis coupled cation transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0004177 aminopeptidase activity IDA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0006470 protein dephosphorylation AnnotationPropagation P GO:0004722 protein serine/threonine phosphatase activity IDA
GO:0099131 ATP hydrolysis coupled ion transmembrane transport AnnotationPropagation P GO:0046933 proton-transporting ATP synthase activity, rotational mechanism ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046933 proton-transporting ATP synthase activity, rotational mechanism ISS
GO:0099132 ATP hydrolysis coupled cation transmembrane transport AnnotationPropagation P GO:0046933 proton-transporting ATP synthase activity, rotational mechanism ISS
GO:0000413 protein peptidyl-prolyl isomerization AnnotationPropagation P GO:0003755 peptidyl-prolyl cis-trans isomerase activity ISS
GO:0006266 DNA ligation AnnotationPropagation P GO:0003911 DNA ligase (NAD+) activity ISS
GO:0032259 methylation AnnotationPropagation P GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016491 oxidoreductase activity IDA
GO:0015837 amine transport AnnotationPropagation P GO:0031459 glycine betaine-transporting ATPase activity ISO
GO:0031460 glycine betaine transport AnnotationPropagation P GO:0031459 glycine betaine-transporting ATPase activity ISO
GO:0072488 ammonium transmembrane transport AnnotationPropagation P GO:0031459 glycine betaine-transporting ATPase activity ISO
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0034061 DNA polymerase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0018580 nitronate monooxygenase activity IDA
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0004003 ATP-dependent DNA helicase activity ISS
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008237 metallopeptidase activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase activity, coupled to transmembrane movement of substances IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008113 peptide-methionine (S)-S-oxide reductase activity ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity ISS
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004148 dihydrolipoyl dehydrogenase activity ISS
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0034061 DNA polymerase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ISS
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity IPI
GO:0006855 drug transmembrane transport AnnotationPropagation P GO:0042895 antibiotic transmembrane transporter activity IMP
GO:0042891 antibiotic transport AnnotationPropagation P GO:0042895 antibiotic transmembrane transporter activity IMP
GO:0090501 RNA phosphodiester bond hydrolysis AnnotationPropagation P GO:0004540 ribonuclease activity ISS
GO:1903791 uracil transmembrane transport AnnotationPropagation P GO:0015210 uracil transmembrane transporter activity ISS
GO:0016311 dephosphorylation AnnotationPropagation P GO:0016791 phosphatase activity IDA
GO:0032259 methylation AnnotationPropagation P GO:0008168 methyltransferase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008718 D-amino-acid dehydrogenase activity IDA
GO:0099131 ATP hydrolysis coupled ion transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0099132 ATP hydrolysis coupled cation transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0047866 dimethylglycine oxidase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0000104 succinate dehydrogenase activity IGI
GO:0044718 siderophore transmembrane transport AnnotationPropagation P GO:0015344 siderophore uptake transmembrane transporter activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004733 pyridoxamine-phosphate oxidase activity ISS
GO:0042823 pyridoxal phosphate biosynthetic process AnnotationPropagation P GO:0004733 pyridoxamine-phosphate oxidase activity ISS
GO:0016310 phosphorylation AnnotationPropagation P GO:0009030 thiamine-phosphate kinase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISA
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IDA
GO:0032774 RNA biosynthetic process AnnotationPropagation P GO:0003899 DNA-directed 5'-3' RNA polymerase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008883 glutamyl-tRNA reductase activity ISS
GO:0006412 translation AnnotationPropagation P GO:0003747 translation release factor activity ISS
GO:0006415 translational termination AnnotationPropagation P GO:0003747 translation release factor activity ISS
GO:0015837 amine transport AnnotationPropagation P GO:0031459 glycine betaine-transporting ATPase activity IDA
GO:0031460 glycine betaine transport AnnotationPropagation P GO:0031459 glycine betaine-transporting ATPase activity IDA
GO:0072488 ammonium transmembrane transport AnnotationPropagation P GO:0031459 glycine betaine-transporting ATPase activity IDA
GO:0032259 methylation AnnotationPropagation P GO:0004851 uroporphyrin-III C-methyltransferase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IDA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IDA
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IDA
GO:0018101 protein citrullination AnnotationPropagation P GO:0016990 arginine deiminase activity IMP
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity NAS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0009703 nitrate reductase (NADH) activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor ISS
GO:0050790 regulation of catalytic activity AnnotationPropagation P GO:0030337 DNA polymerase processivity factor activity ISS
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0030337 DNA polymerase processivity factor activity ISS
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004833 tryptophan 2,3-dioxygenase activity ISS
GO:0016311 dephosphorylation AnnotationPropagation P GO:0008962 phosphatidylglycerophosphatase activity ISS
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003955 NAD(P)H dehydrogenase (quinone) activity IMP
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IDA
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IDA
GO:0016310 phosphorylation AnnotationPropagation P GO:0008804 carbamate kinase activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004109 coproporphyrinogen oxidase activity IGI
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0051213 dioxygenase activity IMP
GO:0006855 drug transmembrane transport AnnotationPropagation P GO:0015238 drug transmembrane transporter activity IDA
GO:0005623 cell AnnotationPropagation C GO:0033212 iron assimilation IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004096 catalase activity IMP
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity IMP
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0003887 DNA-directed DNA polymerase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity IDA
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISS
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity ISS
GO:0006855 drug transmembrane transport AnnotationPropagation P GO:0015238 drug transmembrane transporter activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0008237 metallopeptidase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0099133 ATP hydrolysis coupled anion transmembrane transport AnnotationPropagation P GO:0015412 ATPase-coupled molybdate transmembrane transporter activity ISS
GO:0015689 molybdate ion transport AnnotationPropagation P GO:0015412 ATPase-coupled molybdate transmembrane transporter activity ISS
GO:0098656 anion transmembrane transport AnnotationPropagation P GO:0015412 ATPase-coupled molybdate transmembrane transporter activity ISS
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008940 nitrate reductase activity ISS
GO:0000162 tryptophan biosynthetic process AnnotationPropagation P GO:0004834 tryptophan synthase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0003955 NAD(P)H dehydrogenase (quinone) activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008831 dTDP-4-dehydrorhamnose reductase activity ISS
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0008855 exodeoxyribonuclease VII activity ISS
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0008855 exodeoxyribonuclease VII activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008233 peptidase activity IDA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0032259 methylation AnnotationPropagation P GO:0004047 aminomethyltransferase activity ISS
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity IMP
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase activity, coupled to transmembrane movement of substances ISS
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004747 ribokinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0015045 rubredoxin-NAD(P)+ reductase activity IGI
GO:0006165 nucleoside diphosphate phosphorylation AnnotationPropagation P GO:0004550 nucleoside diphosphate kinase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004497 monooxygenase activity IDA
GO:0006310 DNA recombination AnnotationPropagation P GO:0009009 site-specific recombinase activity IGI
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0036397 formate dehydrogenase (quinone) activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0008238 exopeptidase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008233 peptidase activity ISS
GO:0031167 rRNA methylation AnnotationPropagation P GO:0008649 rRNA methyltransferase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0042602 riboflavin reductase (NADPH) activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0008718 D-amino-acid dehydrogenase activity IDA
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0006508 proteolysis AnnotationPropagation P GO:0008234 cysteine-type peptidase activity ISS
GO:0005623 cell AnnotationPropagation C GO:0033215 iron assimilation by reduction and transport ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004497 monooxygenase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0000104 succinate dehydrogenase activity ISS
GO:0032259 methylation AnnotationPropagation P GO:0008168 methyltransferase activity ISS
GO:0005623 cell AnnotationPropagation C GO:0046916 cellular transition metal ion homeostasis IMP
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0004530 deoxyribonuclease I activity ISS
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0004530 deoxyribonuclease I activity ISS
GO:1903507 negative regulation of nucleic acid-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity IMP
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0018467 formaldehyde dehydrogenase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0008239 dipeptidyl-peptidase activity ISS
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic AnnotationPropagation P GO:0004526 ribonuclease P activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IDA
GO:0022900 electron transport chain AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0006855 drug transmembrane transport AnnotationPropagation P GO:0015238 drug transmembrane transporter activity IMP
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:0004518 nuclease activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IMP
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IMP
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IMP
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0099131 ATP hydrolysis coupled ion transmembrane transport AnnotationPropagation P GO:0046933 proton-transporting ATP synthase activity, rotational mechanism ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046933 proton-transporting ATP synthase activity, rotational mechanism ISS
GO:0099132 ATP hydrolysis coupled cation transmembrane transport AnnotationPropagation P GO:0046933 proton-transporting ATP synthase activity, rotational mechanism ISS
GO:0005623 cell AnnotationPropagation C GO:0006878 cellular copper ion homeostasis ISS

Predictions (experimental)