#Line number RuleID ViolationType Message Line #------------ #------------ # Validation for #3665 annotations in 3670 lines #------------ #Line number RuleID ViolationType Message Line #------------ # GO_AR:0000014 Valid GO term ID Error count: 1 1927 GO_AR:0000014 Error The id 'GO:0030803' in the annotation is an obsolete class PseudoCAP PA3385 amrZ GO:0030803 PMID:24603766 IMP P alginate and motility regulator Z algZ|AlgZ protein taxon:208964 20161012 PseudoCAP #------------ # GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 25 634 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA1338 ggt GO:0050896 PMID:2892489 ISS P gamma-glutamyltranspeptidase precursor protein taxon:208964 20161012 PseudoCAP 1286 GO_AR:0000008 Warning Do not annotate to: GO:0048583 'regulation of response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA2277 arsR GO:0048583 PMID:9802012 ISA UniProtKB:P37309 P ArsR protein protein taxon:208964 20161012 PseudoCAP 1324 GO_AR:0000008 Warning Do not annotate to: GO:0048518 'positive regulation of biological process' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA2387 fpvI GO:0048518 PMID:12562796 IMP P FpvI protein taxon:208964 20161012 PseudoCAP 1497 GO_AR:0000008 Warning Do not annotate to: GO:0006928 'movement of cell or subcellular component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA2570 lecA GO:0006928 PMID:16689730 IDA P LecA pa1L|PA-I galactophilic lectin|lecA (changed from pa1L)|LecA (changed from PA-I galactophilic lectin) protein taxon:208964 20161012 PseudoCAP 1660 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA2924 hisQ GO:0006810 PMID:1733937 ISS P histidine transport system permease HisQ protein taxon:208964 20161012 PseudoCAP 1786 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3153 wzx GO:0006810 PMID:9922263 IDA P O-antigen translocase rfbX|wbpF|O-antigen flippase protein taxon:208964 20161012 PseudoCAP 1916 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3382 phnE GO:0006810 PMID:2155230 ISS P phosphonate transport protein PhnE protein taxon:208964 20161012 PseudoCAP 1938 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3406 hasD GO:0006810 PMID:9244262 ISS P transport protein HasD protein taxon:208964 20161012 PseudoCAP 1978 GO_AR:0000008 Warning Do not annotate to: GO:0009607 'response to biotic stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3540 algD GO:0009607 PMID:18455339 IDA P GDP-mannose 6-dehydrogenase AlgD protein taxon:208964 20161012 PseudoCAP 1979 GO_AR:0000008 Warning Do not annotate to: GO:0009628 'response to abiotic stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3540 algD GO:0009628 PMID:24496793 IDA P GDP-mannose 6-dehydrogenase AlgD protein taxon:208964 20161012 PseudoCAP 1985 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3541 alg8 GO:0050896 PMID:8294014 ISS P alginate biosynthesis protein Alg8 protein taxon:208964 20161012 PseudoCAP 1994 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3543 algK GO:0042710 PMID:9457868 IDA P alginate biosynthetic protein AlgK precursor protein taxon:208964 20161012 PseudoCAP 1998 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3544 algE GO:0050896 PMID:10411261 ISS P Alginate production outer membrane protein AlgE precursor alg76|alginate production protein AlgE protein taxon:208964 20161012 PseudoCAP 2001 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3545 algG GO:0050896 PMID:8144447 IDA P alginate-c5-mannuronan-epimerase AlgG protein taxon:208964 20161012 PseudoCAP 2006 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3546 algX GO:0050896 PMID:15489449 IDA P alginate biosynthesis protein AlgX protein taxon:208964 20161012 PseudoCAP 2010 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3547 algL GO:0050896 PMID:8370530 IDA P poly(beta-d-mannuronate) lyase precursor AlgL Alginate lyase (AlgL) protein taxon:208964 20161012 PseudoCAP 2015 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3549 algJ GO:0050896 PMID:8636017 IDA P alginate o-acetyltransferase AlgJ protein taxon:208964 20161012 PseudoCAP 2018 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3550 algF GO:0050896 PMID:7934909 IDA P alginate o-acetyltransferase AlgF protein taxon:208964 20161012 PseudoCAP 2037 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3563 fruR GO:0006810 PMID:9237914 ISS P fructose transport system repressor FruR protein taxon:208964 20161012 PseudoCAP 2169 GO_AR:0000008 Warning Do not annotate to: GO:0006928 'movement of cell or subcellular component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3805 pilF GO:0006928 PMID:23547883 IMP P type 4 fimbrial biogenesis protein PilF pilin biosynthetic gene PilF protein taxon:208964 20161012 PseudoCAP 2314 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA4110 ampC GO:0050896 PMID:8405939 IDA P beta-lactamase precursor cephalosporinase protein taxon:208964 20161012 PseudoCAP 2552 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA4521 ampE GO:0050896 PMID:9835532 IMP P AmpE protein taxon:208964 20161012 PseudoCAP 2654 GO_AR:0000008 Warning Do not annotate to: GO:0097312 'bacterial biofilm matrix component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA4625 cdrA GO:0097312 PMID:20088866 IDA C cyclic diguanylate-regulated TPS partner A, CdrA protein taxon:208964 20161012 PseudoCAP 2723 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA4706 phuV GO:0006810 PMID:10658665 IMP P PhuV protein taxon:208964 20161012 PseudoCAP 2724 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA4707 phuU GO:0006810 PMID:10658665 IMP P PhuU protein taxon:208964 20161012 PseudoCAP #------------ # GO_AR:0000014 Valid GO term ID Warning count: 24 302 GO_AR:0000014 Warning The id 'GO:1903809' in the annotation is an alternate id for: GO:1904271 PseudoCAP PA0783 putP GO:1903809 PMID:18833300 IMP P sodium/proline symporter PutP protein taxon:208964 20161012 PseudoCAP 347 GO_AR:0000014 Warning The id 'GO:1902765' in the annotation is an alternate id for: GO:0097638 PseudoCAP PA0888 aotJ GO:1902765 PMID:18833300 IMP P arginine/ornithine binding protein AotJ protein taxon:208964 20161012 PseudoCAP 348 GO_AR:0000014 Warning The id 'GO:1903411' in the annotation is an alternate id for: GO:0097640 PseudoCAP PA0888 aotJ GO:1903411 PMID:18833300 IMP P arginine/ornithine binding protein AotJ protein taxon:208964 20161012 PseudoCAP 351 GO_AR:0000014 Warning The id 'GO:1902765' in the annotation is an alternate id for: GO:0097638 PseudoCAP PA0889 aotQ GO:1902765 PMID:18833300 IMP P arginine/ornithine transport protein AotQ protein taxon:208964 20161012 PseudoCAP 352 GO_AR:0000014 Warning The id 'GO:1903411' in the annotation is an alternate id for: GO:0097640 PseudoCAP PA0889 aotQ GO:1903411 PMID:18833300 IMP P arginine/ornithine transport protein AotQ protein taxon:208964 20161012 PseudoCAP 355 GO_AR:0000014 Warning The id 'GO:1902765' in the annotation is an alternate id for: GO:0097638 PseudoCAP PA0890 aotM GO:1902765 PMID:18833300 IMP P arginine/ornithine transport protein AotM protein taxon:208964 20161012 PseudoCAP 356 GO_AR:0000014 Warning The id 'GO:1903411' in the annotation is an alternate id for: GO:0097640 PseudoCAP PA0890 aotM GO:1903411 PMID:18833300 IMP P arginine/ornithine transport protein AotM protein taxon:208964 20161012 PseudoCAP 359 GO_AR:0000014 Warning The id 'GO:1902765' in the annotation is an alternate id for: GO:0097638 PseudoCAP PA0892 aotP GO:1902765 PMID:18833300 IMP P arginine/ornithine transport protein AotP protein taxon:208964 20161012 PseudoCAP 360 GO_AR:0000014 Warning The id 'GO:1903411' in the annotation is an alternate id for: GO:0097640 PseudoCAP PA0892 aotP GO:1903411 PMID:18833300 IMP P arginine/ornithine transport protein AotP protein taxon:208964 20161012 PseudoCAP 1019 GO_AR:0000014 Warning The id 'GO:0015198' in the annotation is an alternate id for: GO:0035673 PseudoCAP PA1807 nppD GO:0015198 PMID:23979749 IMP F NppD probable ATP-binding component of ABC transporter|oppE protein taxon:208964 20161012 PseudoCAP 1023 GO_AR:0000014 Warning The id 'GO:0015198' in the annotation is an alternate id for: GO:0035673 PseudoCAP PA1810 nppA2 GO:0015198 PMID:23979749 IMP F NppA2 probable binding protein component of ABC transporter|oppB protein taxon:208964 20161012 PseudoCAP 1025 GO_AR:0000014 Warning The id 'GO:0015198' in the annotation is an alternate id for: GO:0035673 PseudoCAP PA1811 nppA1 GO:0015198 PMID:23979749 IMP F NppA1 probable solute-binding protein|oppA protein taxon:208964 20161012 PseudoCAP 1302 GO_AR:0000014 Warning The id 'GO:0015725' in the annotation is an alternate id for: GO:0035429 PseudoCAP PA2322 PA2322 GO:0015725 PMID:9045817 ISS P gluconate permease gntU|gntT|gnuT protein taxon:208964 20161012 PseudoCAP 1796 GO_AR:0000014 Warning The id 'GO:0015992' in the annotation is an alternate id for: GO:1902600 PseudoCAP PA3153 wzx GO:0015992 PMID:24023388 IDA P O-antigen translocase rfbX|wbpF|O-antigen flippase protein taxon:208964 20161012 PseudoCAP 2518 GO_AR:0000014 Warning The id 'GO:0042936' in the annotation is an alternate id for: GO:0071916 PseudoCAP PA4496 dppA1 GO:0042936 PMID:25338022 IDA F probable binding protein component of ABC transporter protein taxon:208964 20161012 PseudoCAP 2521 GO_AR:0000014 Warning The id 'GO:0042936' in the annotation is an alternate id for: GO:0071916 PseudoCAP PA4497 dppA2 GO:0042936 PMID:25338022 IDA F probable binding protein component of ABC transporter protein taxon:208964 20161012 PseudoCAP 2527 GO_AR:0000014 Warning The id 'GO:0042936' in the annotation is an alternate id for: GO:0071916 PseudoCAP PA4500 dppA3 GO:0042936 PMID:25338022 IDA F probable binding protein component of ABC transporter protein taxon:208964 20161012 PseudoCAP 2531 GO_AR:0000014 Warning The id 'GO:0042936' in the annotation is an alternate id for: GO:0071916 PseudoCAP PA4501 opdD GO:0042936 PMID:25338022 IDA F Glycine-glutamate dipeptide porin OpdP opdP|Glycine-glutamate dipeptide porin OpdP protein taxon:208964 20161012 PseudoCAP 2532 GO_AR:0000014 Warning The id 'GO:0042936' in the annotation is an alternate id for: GO:0071916 PseudoCAP PA4502 dppA4 GO:0042936 PMID:25338022 IDA F probable binding protein component of ABC transporter protein taxon:208964 20161012 PseudoCAP 2558 GO_AR:0000014 Warning The id 'GO:0016337' in the annotation is an alternate id for: GO:0098609 PseudoCAP PA4525 pilA GO:0016337 PMID:2897336 IDA P type 4 fimbrial precursor PilA type IV pilin protein taxon:208964 20161012 PseudoCAP 2632 GO_AR:0000014 Warning The id 'GO:0000975' in the annotation is an alternate id for: GO:0044212 PseudoCAP PA4596 esrC GO:0000975 PMID:25143244 IDA F EsrC protein taxon:208964 20161012 PseudoCAP 3187 GO_AR:0000014 Warning The id 'GO:1903411' in the annotation is an alternate id for: GO:0097640 PseudoCAP PA5153 PA5153 GO:1903411 PMID:18833300 IMP P amino acid (lysine/arginine/ornithine/histidine/octopine) ABC transporter periplasmic binding protein protein taxon:208964 20161012 PseudoCAP 3188 GO_AR:0000014 Warning The id 'GO:1903411' in the annotation is an alternate id for: GO:0097640 PseudoCAP PA5155 PA5155 GO:1903411 PMID:18833300 IMP P amino acid (lysine/arginine/ornithine/histidine/octopine) ABC transporter membrane protein protein taxon:208964 20161012 PseudoCAP 3331 GO_AR:0000014 Warning The id 'GO:0042936' in the annotation is an alternate id for: GO:0071916 PseudoCAP PA5317 dppA5 GO:0042936 PMID:25338022 IDA F probable binding protein component of ABC dipeptide transporter protein taxon:208964 20161012 PseudoCAP #------------