#Line number RuleID ViolationType Message Line #------------ #------------ # Validation for #3717 annotations in 3725 lines #------------ #Line number RuleID ViolationType Message Line #------------ # GO_AR:0000003 Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field Warning count: 2 2430 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field PseudoCAP PA4332 sadC GO:0005515 PMID:28263305 EXP PseudoCAP:PA4379 F SadC SadC|sadC protein taxon:208964 20190311 PseudoCAP 2446 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field PseudoCAP PA4379 warA GO:0005515 PMID:28263305 EXP PseudoCAP:PA4332 F WarA warA|WarA protein taxon:208964 20190311 PseudoCAP #------------ # GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 25 608 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA1338 ggt GO:0050896 PMID:2892489 ISS P gamma-glutamyltranspeptidase precursor protein taxon:208964 20190311 PseudoCAP 1260 GO_AR:0000008 Warning Do not annotate to: GO:0048583 'regulation of response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA2277 arsR GO:0048583 PMID:9802012 ISA UniProtKB:P37309 P ArsR protein protein taxon:208964 20190311 PseudoCAP 1301 GO_AR:0000008 Warning Do not annotate to: GO:0048518 'positive regulation of biological process' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA2387 fpvI GO:0048518 PMID:12562796 IMP P FpvI fpvI|FpvI protein taxon:208964 20190311 PseudoCAP 1473 GO_AR:0000008 Warning Do not annotate to: GO:0006928 'movement of cell or subcellular component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA2570 lecA GO:0006928 PMID:16689730 IDA P LecA pa1L|PA-I galactophilic lectin|lecA (changed from pa1L)|LecA (changed from PA-I galactophilic lectin) protein taxon:208964 20190311 PseudoCAP 1639 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA2924 hisQ GO:0006810 PMID:1733937 ISS P histidine transport system permease HisQ protein taxon:208964 20190311 PseudoCAP 1771 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3153 wzx GO:0006810 PMID:9922263 IDA P O-antigen translocase rfbX|wbpF|O-antigen flippase protein taxon:208964 20190311 PseudoCAP 1904 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3382 phnE GO:0006810 PMID:2155230 ISS P phosphonate transport protein PhnE protein taxon:208964 20190311 PseudoCAP 1925 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3406 hasD GO:0006810 PMID:9244262 ISS P transport protein HasD protein taxon:208964 20190311 PseudoCAP 1967 GO_AR:0000008 Warning Do not annotate to: GO:0009607 'response to biotic stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3540 algD GO:0009607 PMID:18455339 IDA P GDP-mannose 6-dehydrogenase AlgD protein taxon:208964 20190311 PseudoCAP 1968 GO_AR:0000008 Warning Do not annotate to: GO:0009628 'response to abiotic stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3540 algD GO:0009628 PMID:24496793 IDA P GDP-mannose 6-dehydrogenase AlgD protein taxon:208964 20190311 PseudoCAP 1974 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3541 alg8 GO:0050896 PMID:8294014 ISS P alginate biosynthesis protein Alg8 protein taxon:208964 20190311 PseudoCAP 1983 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3543 algK GO:0042710 PMID:9457868 IDA P alginate biosynthetic protein AlgK precursor protein taxon:208964 20190311 PseudoCAP 1987 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3544 algE GO:0050896 PMID:10411261 ISS P Alginate production outer membrane protein AlgE precursor alg76|alginate production protein AlgE protein taxon:208964 20190311 PseudoCAP 1990 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3545 algG GO:0050896 PMID:8144447 IDA P alginate-c5-mannuronan-epimerase AlgG protein taxon:208964 20190311 PseudoCAP 1995 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3546 algX GO:0050896 PMID:15489449 IDA P alginate biosynthesis protein AlgX protein taxon:208964 20190311 PseudoCAP 1999 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3547 algL GO:0050896 PMID:8370530 IDA P poly(beta-d-mannuronate) lyase precursor AlgL Alginate lyase (AlgL) protein taxon:208964 20190311 PseudoCAP 2004 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3549 algJ GO:0050896 PMID:8636017 IDA P alginate o-acetyltransferase AlgJ protein taxon:208964 20190311 PseudoCAP 2007 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA3550 algF GO:0050896 PMID:7934909 IDA P alginate o-acetyltransferase AlgF protein taxon:208964 20190311 PseudoCAP 2026 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3563 fruR GO:0006810 PMID:9237914 ISS P fructose transport system repressor FruR protein taxon:208964 20190311 PseudoCAP 2151 GO_AR:0000008 Warning Do not annotate to: GO:0006928 'movement of cell or subcellular component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA3805 pilF GO:0006928 PMID:23547883 IMP P type 4 fimbrial biogenesis protein PilF pilin biosynthetic gene PilF protein taxon:208964 20190311 PseudoCAP 2300 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA4110 ampC GO:0050896 PMID:8405939 IDA P beta-lactamase precursor cephalosporinase protein taxon:208964 20190311 PseudoCAP 2539 GO_AR:0000008 Warning Do not annotate to: GO:0050896 'response to stimulus' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate PseudoCAP PA4521 ampE GO:0050896 PMID:9835532 IMP P AmpE ampE|AmpE protein taxon:208964 20190311 PseudoCAP 2641 GO_AR:0000008 Warning Do not annotate to: GO:0097312 'bacterial biofilm matrix component' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA4625 cdrA GO:0097312 PMID:20088866 IDA C cyclic diguanylate-regulated TPS partner A, CdrA protein taxon:208964 20190311 PseudoCAP 2693 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA4706 phuV GO:0006810 PMID:10658665 IMP P PhuV phuV|PhuV protein taxon:208964 20190311 PseudoCAP 2694 GO_AR:0000008 Warning Do not annotate to: GO:0006810 'transport' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate PseudoCAP PA4707 phuU GO:0006810 PMID:10658665 IMP P PhuU phuU|PhuU protein taxon:208964 20190311 PseudoCAP #------------