Table of contents

Summary

GAF summary

Found 125 annotations in 133 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008) No annotations should be made to uninformative high level terms, there is one violation with type Warning.

GAF Prediction Summary

Found 2 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf    go/releases/2019-09-13/extensions/go-gaf.owl

Report

Group: pamgo - Dataset: pamgo_oomycetes

SUMMARY

This report generated on 2019-09-16

Header From Original Association File

Contents

gorule-0000008

gorule-0000020

gorule-0000027

gorule-0000033

other

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

gorule-0000027

Each identifier in GAF is valid

Messages

gorule-0000033

Public Reference IDs (PMID, PMC, doi, or GO_REF) should be preferred over group specific Reference IDs

Messages

other

OWLTools check

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #125 annotations in 133 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 1
87 GO_AR:0000008 Warning Do not annotate to: GO:0006950 'response to stress' The term is considered to high level, as marked via the subset tag: gocheck_do_not_manually_annotate NCBI_GP NCBI_GP:CAB50926 Ric1 GO:0006950 PMID:10591972 ISS NCBI_GP:AAA21847 P protein taxon:4787 20070201 PAMGO_VMD
#------------

Predictions

GO:1901998 toxin transport AnnotationPropagation P GO:0019534 toxin transmembrane transporter activity IDA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0019534 toxin transmembrane transporter activity IDA

Predictions (experimental)