Table of contents

Summary

GAF summary

Found 277 annotations in 285 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008) No annotations should be made to uninformative high level terms, there are 2 violations with type Warning.

GAF Prediction Summary

Found 6 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf    go/releases/2019-07-17/extensions/go-gaf.owl

Report

Group: pamgo - Dataset: pamgo_ddadantii

SUMMARY

This report generated on 2019-07-18

Header From Original Association File

Contents

gorule-0000008

gorule-0000016

gorule-0000020

other

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000016

With/From: IC annotations require a With/From GO ID

Messages

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

other

OWLTools check

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #277 annotations in 285 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 2
73 GO_AR:0000008 Warning Do not annotate to: GO:0140110 'transcription regulator activity' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate ASAP ABF-0016089 pecS GO:0140110 PMID:18790868 IMP F DNA-binding transcriptional regulatory protein PecS gene taxon:198628 20080130 ASAP
246 GO_AR:0000008 Warning Do not annotate to: GO:0042710 'biofilm formation' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate ASAP ABF-0020512 gacA GO:0042710 PMID:18052890 IMP P "Response regulator of the two-component transcriptional regulatory system UvrY-BarA (ExpA-ExpS, GacA-GacS)" gene taxon:198628 20080222 ASAP
#------------

Predictions

GO:0010466 negative regulation of peptidase activity AnnotationPropagation P GO:0030414 peptidase inhibitor activity IDA
GO:0045944 positive regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific IMP
GO:0045944 positive regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific ISA
GO:0045944 positive regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific IMP
GO:0045944 positive regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific ISA
GO:0006508 proteolysis AnnotationPropagation P GO:0008237 metallopeptidase activity IDA

Predictions (experimental)