Table of contents

Summary

GAF summary

Found 304 annotations in 312 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008) No annotations should be made to uninformative high level terms, there is one violation with type Warning.

GAF Prediction Summary

Found 11 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf

Report

Group: pamgo - Dataset: pamgo_ddadantii

SUMMARY

This report generated on 2018-10-23

Contents

gorule-0000008

gorule-0000016

gorule-0000020

other

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000016

With/From: IC annotations require a With/From GO ID

Messages

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

other

OWLTools check

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #304 annotations in 312 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000008 No annotations should be made to uninformative high level terms Warning count: 1
86 GO_AR:0000008 Warning Do not annotate to: GO:0140110 'transcription regulator activity' The term is considered to high level, as marked via the subset tag: gocheck_do_not_annotate ASAP ABF-0016089 pecS GO:0140110 PMID:18790868 IMP F DNA-binding transcriptional regulatory protein PecS gene taxon:198628 20080130 ASAP
#------------

Predictions

GO:0045944 positive regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific ISA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0033155 oligogalacturonide transmembrane transporter activity IGI
GO:0033156 oligogalacturonide transport AnnotationPropagation P GO:0033155 oligogalacturonide transmembrane transporter activity IGI
GO:0045944 positive regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific IMP
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0033155 oligogalacturonide transmembrane transporter activity IGI
GO:0033156 oligogalacturonide transport AnnotationPropagation P GO:0033155 oligogalacturonide transmembrane transporter activity IGI
GO:0006508 proteolysis AnnotationPropagation P GO:0008237 metallopeptidase activity IDA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0033155 oligogalacturonide transmembrane transporter activity IGI
GO:0033156 oligogalacturonide transport AnnotationPropagation P GO:0033155 oligogalacturonide transmembrane transporter activity IGI
GO:0045944 positive regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific IMP
GO:0010466 negative regulation of peptidase activity AnnotationPropagation P GO:0030414 peptidase inhibitor activity IDA

Predictions (experimental)