GAF summary
Found 273 annotations in 281 lines.
GAF Validation Summary Errors are reported first.
For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008) No annotations should be made to uninformative high level terms, there are 2 violations with type Warning.
GAF Prediction Summary
Found 12 predictions, see prediction file for details.
Used Ontology Summary
go/extensions/go-gaf go/releases/2019-12-21/extensions/go-gaf.owl
This report generated on 2019-12-23
No 'NOT' annotations to 'protein binding ; GO:0005515'
IEP and HEP usage is restricted to terms from the Biological Process ontology
IPI should not be used with GO:0003824 catalytic activity or descendents
No annotations should be made to uninformative high level terms
ASAP ABF-0020512 gacA GO:0042710 PMID:18052890 IMP P "Response regulator of the two-component transcriptional regulatory system UvrY-BarA (ExpA-ExpS, GacA-GacS)" gene taxon:198628 20080222 ASAP
ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
Taxon-appropriate annotation check
ASAP ABF-0014958 pehX GO:0052179 PMID:10564505 IGI ASAP:ABF-0014959|ASAP:ABF-0014963 P Exo-poly-alpha-D-galacturonosidase precursor gene taxon:198628 20080121 ASAP
ASAP ABF-0014959 pehW GO:0052179 PMID:10564505 IGI ASAP:ABF-0014963|ASAP:ABF-0014958 P polygalacturonase gene taxon:198628 20080121 ASAP
ASAP ABF-0014963 pehV GO:0052179 PMID:10564505 IGI ASAP:ABF-0014959|ASAP:ABF-0014958 P Exo-poly-alpha-D-galacturonosidase precursor gene taxon:198628 20080121 ASAP
ASAP ABF-0016087 pecM GO:0052179 PMID:11321588 IMP P signal receptor gene taxon:198628 20080228 ASAP
Dual species taxon check
With/From: IC annotations require a With/From GO ID
ASAP ABF-0016563 iaaH GO:0009405 PMID:17189441 IC P Indoleacetamide hydrolase gene taxon:198628 20080125 ASAP
ASAP ABF-0047129 togB GO:0009405 PMID:11555291 IC ASAP:ABF-0019625 P "Predicted rhamnose oligosaccharide ABC transport system, substrate-binding component" gene taxon:198628 20080307 ASAP
ASAP ABF-0174089 togN GO:0009405 PMID:11555291 IC ASAP:ABF-0019625 P "oligogalacturonide ABC transporter, permease component" gene taxon:198628 20080307 ASAP
ASAP ABF-0174090 togA GO:0009405 PMID:11555291 IC ASAP:ABF-0019625 P "oligogalacturonide ABC transporter, ATPase component" gene taxon:198628 20080307 ASAP
IDA annotations must not have a With/From entry
IPI annotations require a With/From entry
Automatic repair of annotations to merged or obsoleted terms
ASAP ABF-0015085 ompR GO:0045941 PMID:17573480 IMP P DNA-binding response regulator in two-component regulatory system with EnvZ gene taxon:198628 20080212 ASAP
ASAP ABF-0015085 ompR GO:0016481 PMID:17573480 IMP P DNA-binding response regulator in two-component regulatory system with EnvZ gene taxon:198628 20080212 ASAP
ASAP ABF-0015085 ompR GO:0016563 PMID:17573480 IMP F DNA-binding response regulator in two-component regulatory system with EnvZ gene taxon:198628 20080212 ASAP
ASAP ABF-0015085 ompR GO:0016564 PMID:17573480 IMP F DNA-binding response regulator in two-component regulatory system with EnvZ gene taxon:198628 20080212 ASAP
ASAP ABF-0015577 hrpL GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P RNA polymerase sigma-54 factor rpoN gene taxon:198628 20080221 ASAP
ASAP ABF-0015577 hrpL GO:0032022 PMID:15629935 IMP P RNA polymerase sigma-54 factor rpoN gene taxon:198628 20080131 ASAP
ASAP ABF-0015577 hrpL GO:0045941 PMID:7592386 ISA ASAP:ACW-0293760 P RNA polymerase sigma-54 factor rpoN gene taxon:198628 20080225 ASAP
ASAP ABF-0015577 hrpL GO:0016563 PMID:7592386 ISA ASAP:ACW-0293760 F RNA polymerase sigma-54 factor rpoN gene taxon:198628 20080225 ASAP
ASAP ABF-0015577 hrpL GO:0052049 PMID:7592386 ISA ASAP:ACW-0293760 P RNA polymerase sigma-54 factor rpoN gene taxon:198628 20080225 ASAP
ASAP ABF-0015579 hrpJ GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P type III secretion protein gene taxon:198628 20080221 ASAP
ASAP ABF-0015580 hrcV GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P "Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)" gene taxon:198628 20080221 ASAP
ASAP ABF-0015581 hrpQ GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpQ gene taxon:198628 20080221 ASAP
ASAP ABF-0015582 hrcN GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P "Type III secretion cytoplasmic ATP synthase (EC 3.6.3.14, YscN,SpaL,MxiB,HrcN,EscN)" gene taxon:198628 20080221 ASAP
ASAP ABF-0015583 hrpO GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpO gene taxon:198628 20080221 ASAP
ASAP ABF-0015584 hrpP GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpP gene taxon:198628 20080221 ASAP
ASAP ABF-0015585 hrcQ GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrcQ gene taxon:198628 20080221 ASAP
ASAP ABF-0015586 hrcR GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P "Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components)" gene taxon:198628 20080221 ASAP
ASAP ABF-0015587 hrcS GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015588|ASAP:ABF-0015589 P "Type III secretion inner membrane protein (YscS,homologous to flagellar export components)" gene taxon:198628 20080221 ASAP
ASAP ABF-0015588 hrcT GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015589 P "Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components)" gene taxon:198628 20080221 ASAP
ASAP ABF-0015589 hrcU GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588 P "Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components)" gene taxon:198628 20080221 ASAP
ASAP ABF-0016089 pecS GO:0030528 PMID:18790868 IMP F DNA-binding transcriptional regulatory protein PecS gene taxon:198628 20080130 ASAP
ASAP ABF-0016089 pecS GO:0045449 PMID:18790868 IMP P DNA-binding transcriptional regulatory protein PecS gene taxon:198628 20080130 ASAP
ASAP ABF-0016544 scrR GO:0016481 PMID:10986236 ISA ASAP:ACW-0289472 P "Fructose repressor FruR, LacI family" gene taxon:198628 20080117 ASAP
ASAP ABF-0016544 scrR GO:0016564 PMID:10986236 ISA ASAP:ACW-0289472 F "Fructose repressor FruR, LacI family" gene taxon:198628 20080117 ASAP
ASAP ABF-0018901 rhaS GO:0045941 PMID:14982630 IMP P "DNA-binding transcriptional activator, L-rhamnose-binding" JW3876|rhaC|ECK3898 gene taxon:198628 20080123 ASAP
ASAP ABF-0018901 rhaS GO:0016563 PMID:14982630 IMP F "DNA-binding transcriptional activator, L-rhamnose-binding" JW3876|rhaC|ECK3898 gene taxon:198628 20080123 ASAP
ASAP ABF-0019414 expR GO:0016564 PMID:16831870 IDA F DNA-binding transcriptional regulatory protein ExpR gene taxon:198628 20080208 ASAP
ASAP ABF-0019585 ORF3 GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P hypothetical protein gene taxon:198628 20080221 ASAP
ASAP ABF-0019586 ORF4 GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P Membrane-bound lytic murein transglycosylase B gene taxon:198628 20080221 ASAP
ASAP ABF-0019587 hrpE GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpE gene taxon:198628 20080221 ASAP
ASAP ABF-0019588 hrpD GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpD gene taxon:198628 20080221 ASAP
ASAP ABF-0019590 hrcJ GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P "Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)" gene taxon:198628 20080221 ASAP
ASAP ABF-0019590 hrcJ GO:0032022 PMID:15629935 IMP P "Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ)" gene taxon:198628 20080131 ASAP
ASAP ABF-0019592 hrpB GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpB gene taxon:198628 20080221 ASAP
ASAP ABF-0019593 hrpA GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P Hrp pili protein hrpA gene taxon:198628 20080221 ASAP
ASAP ABF-0019593 hrpA GO:0032022 PMID:15629935 IMP P Hrp pili protein hrpA gene taxon:198628 20080131 ASAP
ASAP ABF-0019594 hrpS GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpS type III protein secretion system regulatory protein gene taxon:198628 20080221 ASAP
ASAP ABF-0019594 hrpS GO:0032022 PMID:15629935 IMP P HrpS type III protein secretion system regulatory protein gene taxon:198628 20080131 ASAP
ASAP ABF-0019594 hrpS GO:0045941 PMID:7592386 ISA ASAP:ACW-0293740 P HrpS type III protein secretion system regulatory protein gene taxon:198628 20080225 ASAP
ASAP ABF-0019594 hrpS GO:0016563 PMID:7592386 ISA ASAP:ACW-0293740 F HrpS type III protein secretion system regulatory protein gene taxon:198628 20080225 ASAP
ASAP ABF-0019598 hrpY GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P "DNA-binding response regulator, LuxR family, near polyamine transporter" gene taxon:198628 20080221 ASAP
ASAP ABF-0019598 hrpY GO:0032022 PMID:15629935 IMP P "DNA-binding response regulator, LuxR family, near polyamine transporter" gene taxon:198628 20080131 ASAP
ASAP ABF-0019600 hrpX GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P type III protein secretion system sensor kinase gene taxon:198628 20080221 ASAP
ASAP ABF-0019600 hrpX GO:0032022 PMID:15629935 IMP P type III protein secretion system sensor kinase gene taxon:198628 20080131 ASAP
ASAP ABF-0020117 kdgR GO:0016481 PMID:1840643 IDA P DNA-binding transcriptional regulatory protein KdgR gene taxon:198628 20080115 ASAP
ASAP ABF-0020117 kdgR GO:0016564 PMID:1840643 IDA F DNA-binding transcriptional regulatory protein KdgR gene taxon:198628 20080115 ASAP
ASAP ABF-0020783 hrpV GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpV gene taxon:198628 20080221 ASAP
ASAP ABF-0020784 hrpN GO:0052049 PMID:9707625 IGI ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P Harpin hrpN gene taxon:198628 20080221 ASAP
ASAP ABF-0020863 hrpT GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpT precursor gene taxon:198628 20080221 ASAP
ASAP ABF-0020864 hrcC GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P "Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)" gene taxon:198628 20080221 ASAP
ASAP ABF-0020864 hrcC GO:0052049 PMID:9612954 IMP P "Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG)" gene taxon:198628 20080213 ASAP
ASAP ABF-0020865 hrpG GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpG precursor gene taxon:198628 20080221 ASAP
ASAP ABF-0020866 hrpF GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020867|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P HrpF gene taxon:198628 20080221 ASAP
ASAP ABF-0020867 plcA GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0047134|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P Extracellular phospholipase C gene taxon:198628 20080221 ASAP
ASAP ABF-0047134 ORF2 GO:0052049 PMID:9707625 IGI ASAP:ABF-0020784|ASAP:ABF-0020783|ASAP:ABF-0020863|ASAP:ABF-0020864|ASAP:ABF-0020865|ASAP:ABF-0020866|ASAP:ABF-0020867|ASAP:ABF-0019585|ASAP:ABF-0019586|ASAP:ABF-0019587|ASAP:ABF-0019588|ASAP:ABF-0019590|ASAP:ABF-0019592|ASAP:ABF-0019593|ASAP:ABF-0019594|ASAP:ABF-0019598|ASAP:ABF-0019600|ASAP:ABF-0015577|ASAP:ABF-0015579|ASAP:ABF-0015580|ASAP:ABF-0015581|ASAP:ABF-0015582|ASAP:ABF-0015583|ASAP:ABF-0015584|ASAP:ABF-0015585|ASAP:ABF-0015586|ASAP:ABF-0015587|ASAP:ABF-0015588|ASAP:ABF-0015589 P hypothetical protein gene taxon:198628 20080221 ASAP
Aspect can only be one of C, P, F and should be repaired using the GO term
All IEAs over a year old are removed
Deprecated GO_REFs are not allowed
IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference
Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants
Qualifier: IKR evidence code requires a NOT qualifier
Check for valid combination of evidence code and GO_REF
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.
Annotations to ISS, ISA and ISO should not be self-referential