Table of contents

Summary

GAF summary

Found 183 annotations in 191 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000003 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000003) Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field, there are 2 violations with type Warning.

GAF Prediction Summary

Found 11 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf

Report

Group: pamgo - Dataset: pamgo_atumefaciens

SUMMARY

This report generated on 2018-12-16

Contents

gorule-0000008

gorule-0000016

gorule-0000020

gorule-0000027

other

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000016

With/From: IC annotations require a With/From GO ID

Messages

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

gorule-0000027

Each identifier in GAF is valid

Messages

other

OWLTools check

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #183 annotations in 191 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000003 Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field Warning count: 2
104 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field NCBI_NP NP_396676.1 virF GO:0005515 PMID:12795696|PMID:15343337 IDA F exportedvirulenceprotein Atu6154 gene taxon:176299 20070324 PAMGO_GAT
171 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field NCBI_NP NP_396676.1 virF GO:0005515 PMID:12795696|PMID:15343337 IDA F exportedvirulenceprotein Atu6154 gene taxon:176299 20070324 PAMGO_GAT
#------------

Predictions

GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase activity, coupled to transmembrane movement of substances ISS
GO:0005623 cell AnnotationPropagation C GO:0051170 import into nucleus IDA
GO:0005623 cell AnnotationPropagation C GO:0051170 import into nucleus ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015475 adhesin autotransporter activity ISS
GO:0005623 cell AnnotationPropagation C GO:0051170 import into nucleus ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0023014 signal transduction by protein phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004497 monooxygenase activity IDA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity TAS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004497 monooxygenase activity IDA

Predictions (experimental)