Table of contents

Report

Group: paint - Dataset: paint_ecocyc

SUMMARY

This report generated on 2025-07-08

Header From Original Association File

!gaf-version: 2.2
!Created on Tue Apr 15 12:22:23 2025.
!generated-by: PANTHER
!date-generated: 2025-04-15
!PANTHER version: v.19.0.
!GO version: 2025-03-16.

Contents

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gorule-0000020

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gorule-0000028

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other

MESSAGES

gorule-0000002

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

gorule-0000005

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations are not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

gorule-0000013

Taxon-appropriate annotation check

gorule-0000015

Dual species taxon check

gorule-0000016

With/From: IC annotations require a With/From GO ID

gorule-0000017

IDA annotations must not have a With/From entry

gorule-0000018

IPI annotations require a With/From entry

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

gorule-0000022

Check for, and filter, annotations made to retracted publications

gorule-0000028

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

gorule-0000029

IEAs should be less than one year old.

gorule-0000030

Obsolete GO_REFs are not allowed

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

gorule-0000043

Check for valid combination of evidence code and GO_REF

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

gorule-0000055

References should have only one ID per ID space

gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

gorule-0000061

Allowed gene product to term relations (gp2term)

gorule-0000063

Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

gorule-0000064

TreeGrafter IEAs should be filtered for GO reference species

gorule-0000065

Annotations to term that are candidates for obsoletion should be produce a warning

Messages

other

Predictions

GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0001522 pseudouridine synthesis AnnotationPropagation P GO:0004730 pseudouridylate synthase activity IBA
GO:0015074 DNA integration AnnotationPropagation P GO:0009009 site-specific recombinase activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0015159 polysaccharide transmembrane transporter activity IBA
GO:0015774 polysaccharide transport AnnotationPropagation P GO:0015159 polysaccharide transmembrane transporter activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004396 hexokinase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0098531 ligand-modulated transcription factor activity IBA
GO:0006761 dihydrofolate biosynthetic process AnnotationPropagation P GO:0008841 dihydrofolate synthase activity IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0009383 rRNA (cytosine-C5-)-methyltransferase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IBA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0052907 23S rRNA (adenine(1618)-N(6))-methyltransferase activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0015505 uracil:monoatomic cation symporter activity IBA
GO:1903791 uracil transmembrane transport AnnotationPropagation P GO:0015505 uracil:monoatomic cation symporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015288 porin activity IBA
GO:0006457 protein folding AnnotationPropagation P GO:0044183 protein folding chaperone IBA
GO:1902047 polyamine transmembrane transport AnnotationPropagation P GO:0015417 ABC-type polyamine transporter activity IBA
GO:0015862 uridine transmembrane transport AnnotationPropagation P GO:0015213 uridine transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0033214 siderophore-iron import into cell AnnotationPropagation P GO:0015344 siderophore uptake transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015344 siderophore uptake transmembrane transporter activity IBA
GO:1902476 chloride transmembrane transport AnnotationPropagation P GO:0005247 voltage-gated chloride channel activity IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0009383 rRNA (cytosine-C5-)-methyltransferase activity IBA
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015366 malate:proton symporter activity IBA
GO:0071423 malate transmembrane transport AnnotationPropagation P GO:0015366 malate:proton symporter activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0015144 carbohydrate transmembrane transporter activity IBA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0008379 thioredoxin peroxidase activity IBA
GO:0015706 nitrate transmembrane transport AnnotationPropagation P GO:0015112 nitrate transmembrane transporter activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0033863 ribose 1,5-bisphosphate phosphokinase activity IBA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004601 peroxidase activity IBA
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0008320 protein transmembrane transporter activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0009384 N-acylmannosamine kinase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015333 peptide:proton symporter activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004396 hexokinase activity IBA
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0033214 siderophore-iron import into cell AnnotationPropagation P GO:0015344 siderophore uptake transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015344 siderophore uptake transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015288 porin activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:1990238 double-stranded DNA endonuclease activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0004529 DNA exonuclease activity IBA
GO:0016020 membrane AnnotationPropagation C GO:0009245 lipid A biosynthetic process IBA
GO:0015749 monosaccharide transmembrane transport AnnotationPropagation P GO:0015134 hexuronate transmembrane transporter activity IBA
GO:0015736 hexuronate transmembrane transport AnnotationPropagation P GO:0015134 hexuronate transmembrane transporter activity IBA
GO:0015778 hexuronide transmembrane transport AnnotationPropagation P GO:0015134 hexuronate transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0009486 cytochrome bo3 ubiquinol oxidase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0090563 protein-phosphocysteine-sugar phosphotransferase activity IBA
GO:1903830 magnesium ion transmembrane transport AnnotationPropagation P GO:0015095 magnesium ion transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0016020 membrane AnnotationPropagation C GO:0009245 lipid A biosynthetic process IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0005315 phosphate transmembrane transporter activity IBA
GO:0015698 inorganic anion transport AnnotationPropagation P GO:0005315 phosphate transmembrane transporter activity IBA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004791 thioredoxin-disulfide reductase (NADPH) activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0015794 glycerol-3-phosphate transmembrane transport AnnotationPropagation P GO:0015169 glycerol-3-phosphate transmembrane transporter activity IBA
GO:0016020 membrane AnnotationPropagation C GO:0006665 sphingolipid metabolic process IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015293 symporter activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0008137 NADH dehydrogenase (ubiquinone) activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0090588 protein-phosphocysteine-N-acetylmuramate phosphotransferase system transporter activity IBA
GO:1902047 polyamine transmembrane transport AnnotationPropagation P GO:0015417 ABC-type polyamine transporter activity IBA
GO:0015074 DNA integration AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0075713 establishment of integrated proviral latency AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0015294 solute:monoatomic cation symporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015288 porin activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015473 fimbrial usher porin activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0004536 DNA nuclease activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015501 glutamate:sodium symporter activity IBA
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0015501 glutamate:sodium symporter activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0015501 glutamate:sodium symporter activity IBA
GO:0006835 dicarboxylic acid transport AnnotationPropagation P GO:0015558 secondary active p-aminobenzoyl-glutamate transmembrane transporter activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0015558 secondary active p-aminobenzoyl-glutamate transmembrane transporter activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0015558 secondary active p-aminobenzoyl-glutamate transmembrane transporter activity IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0001216 DNA-binding transcription activator activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0034040 ATPase-coupled lipid transmembrane transporter activity IBA
GO:0006869 lipid transport AnnotationPropagation P GO:0034040 ATPase-coupled lipid transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0015751 arabinose transmembrane transport AnnotationPropagation P GO:0015147 L-arabinose transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity IBA
GO:0015751 arabinose transmembrane transport AnnotationPropagation P GO:0015147 L-arabinose transmembrane transporter activity IBA
GO:0015074 DNA integration AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0075713 establishment of integrated proviral latency AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:1904680 peptide transmembrane transporter activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0043872 lysine:cadaverine antiporter activity IBA
GO:0015695 organic cation transport AnnotationPropagation P GO:0043872 lysine:cadaverine antiporter activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0043872 lysine:cadaverine antiporter activity IBA
GO:0006415 translational termination AnnotationPropagation P GO:0016150 translation release factor activity, codon nonspecific IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0015835 peptidoglycan transport AnnotationPropagation P GO:0015640 peptidoglycan peptide transmembrane transporter activity IBA
GO:0015834 peptidoglycan-associated peptide transport AnnotationPropagation P GO:0015640 peptidoglycan peptide transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015640 peptidoglycan peptide transmembrane transporter activity IBA
GO:0071805 potassium ion transmembrane transport AnnotationPropagation P GO:0008556 P-type potassium transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity IBA
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0009977 proton motive force dependent protein transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015620 ferric-enterobactin transmembrane transporter activity IBA
GO:0015685 ferric-enterobactin import into cell AnnotationPropagation P GO:0015620 ferric-enterobactin transmembrane transporter activity IBA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0051920 peroxiredoxin activity IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0001216 DNA-binding transcription activator activity IBA
GO:0034258 nicotinamide riboside transport AnnotationPropagation P GO:0034257 nicotinamide riboside transmembrane transporter activity IBA
GO:1901642 nucleoside transmembrane transport AnnotationPropagation P GO:0034257 nicotinamide riboside transmembrane transporter activity IBA
GO:0042780 tRNA 3'-end processing AnnotationPropagation P GO:0042781 3'-tRNA processing endoribonuclease activity IBA
GO:0015726 L-idonate transmembrane transport AnnotationPropagation P GO:0015568 L-idonate transmembrane transporter activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015288 porin activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0015794 glycerol-3-phosphate transmembrane transport AnnotationPropagation P GO:0015169 glycerol-3-phosphate transmembrane transporter activity IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0036308 16S rRNA (guanine(1516)-N(2))-methyltransferase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0005351 carbohydrate:proton symporter activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0005351 carbohydrate:proton symporter activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IBA
GO:0015835 peptidoglycan transport AnnotationPropagation P GO:0015640 peptidoglycan peptide transmembrane transporter activity IBA
GO:0015834 peptidoglycan-associated peptide transport AnnotationPropagation P GO:0015640 peptidoglycan peptide transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015640 peptidoglycan peptide transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0098531 ligand-modulated transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015473 fimbrial usher porin activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0098531 ligand-modulated transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015205 nucleobase transmembrane transporter activity IBA
GO:0015851 nucleobase transport AnnotationPropagation P GO:0015205 nucleobase transmembrane transporter activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0090585 protein-phosphocysteine-L-ascorbate-phosphotransferase system transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015288 porin activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0090564 protein-phosphocysteine-glucose phosphotransferase system transporter activity IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0008650 rRNA (uridine-2'-O-)-methyltransferase activity IBA
GO:1904823 purine nucleobase transmembrane transport AnnotationPropagation P GO:0042907 xanthine transmembrane transporter activity IBA
GO:0042906 xanthine transport AnnotationPropagation P GO:0042907 xanthine transmembrane transporter activity IBA
GO:0006310 DNA recombination AnnotationPropagation P GO:0000150 DNA strand exchange activity IBA
GO:0006833 water transport AnnotationPropagation P GO:0015250 water channel activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015250 water channel activity IBA
GO:1902047 polyamine transmembrane transport AnnotationPropagation P GO:0015417 ABC-type polyamine transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0015914 phospholipid transport AnnotationPropagation P GO:0120014 phospholipid transfer activity IBA
GO:0120009 intermembrane lipid transfer AnnotationPropagation P GO:0120014 phospholipid transfer activity IBA
GO:0015751 arabinose transmembrane transport AnnotationPropagation P GO:0015147 L-arabinose transmembrane transporter activity IBA
GO:2000142 regulation of DNA-templated transcription initiation AnnotationPropagation P GO:0016987 sigma factor activity IBA
GO:0016020 membrane AnnotationPropagation C GO:0009245 lipid A biosynthetic process IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015295 solute:proton symporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015220 choline transmembrane transporter activity IBA
GO:0015871 choline transport AnnotationPropagation P GO:0015220 choline transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0015724 formate transport AnnotationPropagation P GO:0015499 formate transmembrane transporter activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0015499 formate transmembrane transporter activity IBA
GO:0006310 DNA recombination AnnotationPropagation P GO:0000150 DNA strand exchange activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0005315 phosphate transmembrane transporter activity IBA
GO:0015698 inorganic anion transport AnnotationPropagation P GO:0005315 phosphate transmembrane transporter activity IBA
GO:0098655 monoatomic cation transmembrane transport AnnotationPropagation P GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IBA
GO:1904823 purine nucleobase transmembrane transport AnnotationPropagation P GO:0042907 xanthine transmembrane transporter activity IBA
GO:0042906 xanthine transport AnnotationPropagation P GO:0042907 xanthine transmembrane transporter activity IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0009383 rRNA (cytosine-C5-)-methyltransferase activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0004520 DNA endonuclease activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0140359 ABC-type transporter activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015506 nucleoside:proton symporter activity IBA
GO:1901642 nucleoside transmembrane transport AnnotationPropagation P GO:0015506 nucleoside:proton symporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process AnnotationPropagation P GO:0004797 thymidine kinase activity IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0001216 DNA-binding transcription activator activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0098531 ligand-modulated transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015333 peptide:proton symporter activity IBA
GO:0034220 monoatomic ion transmembrane transport AnnotationPropagation P GO:0008381 mechanosensitive monoatomic ion channel activity IBA
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0003887 DNA-directed DNA polymerase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IBA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0009977 proton motive force dependent protein transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity IBA
GO:0015811 L-cystine transport AnnotationPropagation P GO:0015184 L-cystine transmembrane transporter activity IBA
GO:1902475 L-alpha-amino acid transmembrane transport AnnotationPropagation P GO:0015184 L-cystine transmembrane transporter activity IBA
GO:1903830 magnesium ion transmembrane transport AnnotationPropagation P GO:0015095 magnesium ion transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IBA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IBA
GO:0071577 zinc ion transmembrane transport AnnotationPropagation P GO:0005385 zinc ion transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0015847 putrescine transport AnnotationPropagation P GO:0015489 putrescine transmembrane transporter activity IBA
GO:1902047 polyamine transmembrane transport AnnotationPropagation P GO:0015489 putrescine transmembrane transporter activity IBA
GO:1904981 maltose transmembrane transport AnnotationPropagation P GO:0015423 ABC-type maltose transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0034775 glutathione transmembrane transport AnnotationPropagation P GO:0034634 glutathione transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0098531 ligand-modulated transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015562 efflux transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0001216 DNA-binding transcription activator activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0052913 16S rRNA (guanine(966)-N(2))-methyltransferase activity IBA
GO:0019344 cysteine biosynthetic process AnnotationPropagation P GO:0004124 cysteine synthase activity IBA
GO:0035600 tRNA methylthiolation AnnotationPropagation P GO:0035597 tRNA-2-methylthio-N(6)-dimethylallyladenosine(37) synthase activity IBA
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0003887 DNA-directed DNA polymerase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015288 porin activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:1903716 guanine transmembrane transport AnnotationPropagation P GO:0015208 guanine transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015293 symporter activity IBA
GO:0015757 galactose transmembrane transport AnnotationPropagation P GO:0005354 galactose transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0042350 GDP-L-fucose biosynthetic process AnnotationPropagation P GO:0050577 GDP-L-fucose synthase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015288 porin activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004747 ribokinase activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0015159 polysaccharide transmembrane transporter activity IBA
GO:0015774 polysaccharide transport AnnotationPropagation P GO:0015159 polysaccharide transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:1904680 peptide transmembrane transporter activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0043858 arginine:ornithine antiporter activity IBA
GO:0015695 organic cation transport AnnotationPropagation P GO:0043858 arginine:ornithine antiporter activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0043858 arginine:ornithine antiporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015288 porin activity IBA
GO:0019430 removal of superoxide radicals AnnotationPropagation P GO:0004784 superoxide dismutase activity IBA
GO:0016020 membrane AnnotationPropagation C GO:0009245 lipid A biosynthetic process IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IBA
GO:0006457 protein folding AnnotationPropagation P GO:0044183 protein folding chaperone IBA
GO:0015074 DNA integration AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0075713 establishment of integrated proviral latency AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:1904823 purine nucleobase transmembrane transport AnnotationPropagation P GO:0015207 adenine transmembrane transporter activity IBA
GO:0015853 adenine transport AnnotationPropagation P GO:0015207 adenine transmembrane transporter activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0090563 protein-phosphocysteine-sugar phosphotransferase activity IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0071424 rRNA (cytosine-N4-)-methyltransferase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0045127 N-acetylglucosamine kinase activity IBA
GO:0015847 putrescine transport AnnotationPropagation P GO:0015496 putrescine:ornithine antiporter activity IBA
GO:1903352 L-ornithine transmembrane transport AnnotationPropagation P GO:0015496 putrescine:ornithine antiporter activity IBA
GO:1902047 polyamine transmembrane transport AnnotationPropagation P GO:0015496 putrescine:ornithine antiporter activity IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:1990238 double-stranded DNA endonuclease activity IBA
GO:0015821 methionine transport AnnotationPropagation P GO:0015191 L-methionine transmembrane transporter activity IBA
GO:1902475 L-alpha-amino acid transmembrane transport AnnotationPropagation P GO:0015191 L-methionine transmembrane transporter activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0070476 rRNA (guanine-N7)-methylation AnnotationPropagation P GO:0070043 rRNA (guanine-N7-)-methyltransferase activity IBA
GO:0015835 peptidoglycan transport AnnotationPropagation P GO:0015640 peptidoglycan peptide transmembrane transporter activity IBA
GO:0015834 peptidoglycan-associated peptide transport AnnotationPropagation P GO:0015640 peptidoglycan peptide transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015640 peptidoglycan peptide transmembrane transporter activity IBA
GO:1901642 nucleoside transmembrane transport AnnotationPropagation P GO:0005337 nucleoside transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015473 fimbrial usher porin activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0016020 membrane AnnotationPropagation C GO:0009245 lipid A biosynthetic process IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IBA
GO:0006750 glutathione biosynthetic process AnnotationPropagation P GO:0004363 glutathione synthase activity IBA
GO:0019344 cysteine biosynthetic process AnnotationPropagation P GO:0004124 cysteine synthase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015473 fimbrial usher porin activity IBA
GO:0015909 long-chain fatty acid transport AnnotationPropagation P GO:0015483 long-chain fatty acid transporting porin activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0015483 long-chain fatty acid transporting porin activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0008311 double-stranded DNA 3'-5' DNA exonuclease activity IBA
GO:0046836 glycolipid transport AnnotationPropagation P GO:0017089 glycolipid transfer activity IBA
GO:0120009 intermembrane lipid transfer AnnotationPropagation P GO:0017089 glycolipid transfer activity IBA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004130 cytochrome-c peroxidase activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0034040 ATPase-coupled lipid transmembrane transporter activity IBA
GO:0006869 lipid transport AnnotationPropagation P GO:0034040 ATPase-coupled lipid transmembrane transporter activity IBA
GO:0042823 pyridoxal phosphate biosynthetic process AnnotationPropagation P GO:0004733 pyridoxamine phosphate oxidase activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0034040 ATPase-coupled lipid transmembrane transporter activity IBA
GO:0006869 lipid transport AnnotationPropagation P GO:0034040 ATPase-coupled lipid transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:1904680 peptide transmembrane transporter activity IBA
GO:0034755 iron ion transmembrane transport AnnotationPropagation P GO:0015093 ferrous iron transmembrane transporter activity IBA
GO:0046710 GDP metabolic process AnnotationPropagation P GO:0004385 GMP kinase activity IBA
GO:0046037 GMP metabolic process AnnotationPropagation P GO:0004385 GMP kinase activity IBA
GO:0046940 nucleoside monophosphate phosphorylation AnnotationPropagation P GO:0004385 GMP kinase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0035442 dipeptide transmembrane transport AnnotationPropagation P GO:0071916 dipeptide transmembrane transporter activity IBA
GO:0071805 potassium ion transmembrane transport AnnotationPropagation P GO:0008556 P-type potassium transmembrane transporter activity IBA
GO:0015699 antimonite transmembrane transport AnnotationPropagation P GO:0042960 antimonite secondary active transmembrane transporter activity IBA
GO:0003333 amino acid transmembrane transport AnnotationPropagation P GO:0015171 amino acid transmembrane transporter activity IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0008990 rRNA (guanine-N2-)-methyltransferase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0018106 peptidyl-histidine phosphorylation AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0006096 glycolytic process AnnotationPropagation P GO:0004743 pyruvate kinase activity IBA
GO:1902047 polyamine transmembrane transport AnnotationPropagation P GO:0015417 ABC-type polyamine transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity IBA
GO:0034219 carbohydrate transmembrane transport AnnotationPropagation P GO:0090563 protein-phosphocysteine-sugar phosphotransferase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015473 fimbrial usher porin activity IBA
GO:1904981 maltose transmembrane transport AnnotationPropagation P GO:0015423 ABC-type maltose transporter activity IBA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0061513 glucose 6-phosphate:phosphate antiporter activity IBA
GO:0015698 inorganic anion transport AnnotationPropagation P GO:0061513 glucose 6-phosphate:phosphate antiporter activity IBA
GO:0015760 glucose-6-phosphate transport AnnotationPropagation P GO:0061513 glucose 6-phosphate:phosphate antiporter activity IBA
GO:1905039 carboxylic acid transmembrane transport AnnotationPropagation P GO:0046943 carboxylic acid transmembrane transporter activity IBA
GO:2000142 regulation of DNA-templated transcription initiation AnnotationPropagation P GO:0016987 sigma factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:1904680 peptide transmembrane transporter activity IBA
GO:0031167 rRNA methylation AnnotationPropagation P GO:0070677 rRNA (cytosine-2'-O-)-methyltransferase activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0140359 ABC-type transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:1904680 peptide transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity IBA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0022857 transmembrane transporter activity IBA
GO:0015074 DNA integration AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0075713 establishment of integrated proviral latency AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0015074 DNA integration AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0075713 establishment of integrated proviral latency AnnotationPropagation P GO:0008979 prophage integrase activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015473 fimbrial usher porin activity IBA
GO:0045893 positive regulation of DNA-templated transcription AnnotationPropagation P GO:0001216 DNA-binding transcription activator activity IBA
GO:0015835 peptidoglycan transport AnnotationPropagation P GO:0015640 peptidoglycan peptide transmembrane transporter activity IBA
GO:0015834 peptidoglycan-associated peptide transport AnnotationPropagation P GO:0015640 peptidoglycan peptide transmembrane transporter activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015640 peptidoglycan peptide transmembrane transporter activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA
GO:1902047 polyamine transmembrane transport AnnotationPropagation P GO:0015417 ABC-type polyamine transporter activity IBA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0035312 5'-3' DNA exonuclease activity IBA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015473 fimbrial usher porin activity IBA
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity IBA

Predictions (experimental)