Group: unknown - Dataset: unknown

SUMMARY

This report generated on 2022-05-25

Associations: 2104
Lines in file (incl headers): 2121
Lines skipped: 14

Header From Original Association File

!gpa-version: 1.1
!collation date: 2022-05-24
!collated from production models in https://github.com/geneontology/noctua-models/ where col1 matches pr

MESSAGES

gorule-0000001

total: 13

Messages

ERROR - Syntax error in annotation extension field: extensions should be relation(curie) (regulated_by(GO:0031110)) -- PR Q91ZU6 acts_upstream_of GO:0031109 PMID:10428034 ECO:0000315 MGI:MGI:2429314 20080828 MGI occurs_in(EMAPA:16668),regulated_by(GO:0031110) contributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:MGI_MGI_104627|model-state=production|contributor=https://orcid.org/0000-0001-9990-8331
ERROR - Syntax error in annotation extension field: extensions should be relation(curie) (regulated_by(GO:0031110)) -- PR Q91ZU6 acts_upstream_of GO:0031109 PMID:10428034 ECO:0000315 MGI:MGI:2429314 20080828 MGI occurs_in(CL:0000101),regulated_by(GO:0031110) contributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:MGI_MGI_104627|model-state=production|contributor=https://orcid.org/0000-0001-9990-8331
ERROR - Syntax error in annotation extension field: extensions should be relation(curie) (regulated_by(GO:0090036)) -- PR P47757-1 acts_upstream_of GO:0070528 PMID:12089068 ECO:0000315 20130403 MGI occurs_in(EMAPA:16105),regulated_by(GO:0090036) noctua-model-id=gomodel:MGI_MGI_104652|contributor=https://orcid.org/0000-0001-5501-853X|model-state=production
ERROR - Syntax error in annotation extension field: extensions should be relation(curie) (regulated_by(GO:0061178)) -- PR Q9CS84-1 acts_upstream_of GO:0035773 PMID:22235116 ECO:0000315 MGI:MGI:3042794 20131107 MGI occurs_in(EMAPA:32927),regulated_by(GO:0061178) noctua-model-id=gomodel:MGI_MGI_1096391|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production
ERROR - Syntax error in annotation extension field: extensions should be relation(curie) (regulated_by(GO:2000249)) -- PR 000037136 acts_upstream_of GO:0031532 PMID:21911934 ECO:0000316 MGI:MGI:98725 20131014 MGI occurs_in(CL:0000653),regulated_by(GO:2000249) contributor=https://orcid.org/0000-0001-5501-853X|model-state=production|noctua-model-id=gomodel:MGI_MGI_88564
ERROR - Syntax error in annotation extension field: extensions should be relation(curie) (regulated_by(GO:2000249)) -- PR 000037136 acts_upstream_of GO:0031532 PMID:21911934 ECO:0000316 MGI:MGI:1330281 20131014 MGI occurs_in(CL:0000653),regulated_by(GO:2000249) contributor=https://orcid.org/0000-0001-5501-853X|model-state=production|noctua-model-id=gomodel:MGI_MGI_88564
ERROR - Syntax error in annotation extension field: extensions should be relation(curie) (regulated_by(GO:0014059)) -- PR P61168-2 acts_upstream_of GO:0014046 PMID:11943831 ECO:0000315 MGI:MGI:2675755 20070723 MGI occurs_in(EMAPA:17549),regulated_by(GO:0014059) contributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:MGI_MGI_94924|model-state=production
ERROR - Syntax error in annotation extension field: extensions should be relation(curie) (regulated_by(GO:0032228)) -- PR P61168-2 acts_upstream_of GO:0051932 PMID:15489038 ECO:0000315 MGI:MGI:2387895 20140926 MGI occurs_in(EMAPA:17549),regulated_by(GO:0032228) contributor=https://orcid.org/0000-0001-5501-853X|noctua-model-id=gomodel:MGI_MGI_94924|model-state=production
ERROR - Syntax error in annotation extension field: extensions should be relation(curie) (regulated_by(GO:0032228)) -- PR P61168-2 acts_upstream_of GO:0051932 PMID:15489038 ECO:0000315 MGI:MGI:2675755 20140926 MGI occurs_in(EMAPA:17549),regulated_by(GO:0032228) contributor=https://orcid.org/0000-0001-5501-853X|noctua-model-id=gomodel:MGI_MGI_94924|model-state=production
ERROR - Syntax error in annotation extension field: extensions should be relation(curie) (regulated_by(GO:0014059)) -- PR P61168-2 acts_upstream_of GO:0014046 PMID:11943831 ECO:0000315 MGI:MGI:2387895 20070723 MGI occurs_in(EMAPA:17549),regulated_by(GO:0014059) contributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:MGI_MGI_94924|model-state=production
ERROR - Syntax error in annotation extension field: extensions should be relation(curie) (regulated_by(GO:0032228)) -- PR P61168-1 acts_upstream_of GO:0051932 PMID:15489038 ECO:0000315 MGI:MGI:2387895 20070723 MGI occurs_in(EMAPA:17549),regulated_by(GO:0032228) contributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:MGI_MGI_94924|model-state=production
ERROR - Syntax error in annotation extension field: extensions should be relation(curie) (regulated_by(GO:0032228)) -- PR P61168-1 acts_upstream_of GO:0051932 PMID:15489038 ECO:0000315 MGI:MGI:2675755 20070723 MGI occurs_in(EMAPA:17549),regulated_by(GO:0032228) contributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:MGI_MGI_94924|model-state=production
ERROR - Syntax error in annotation extension field: extensions should be relation(curie) (regulated_by(GO:2000036)) -- PR P23708-2 acts_upstream_of GO:0019827 PMID:22969033 ECO:0000314 20131016 MGI regulated_by(GO:2000036) noctua-model-id=gomodel:MGI_MGI_97316|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production

gorule-0000002

total: 0

gorule-0000006

total: 0

gorule-0000007

total: 0

gorule-0000008

total: 8

Messages

WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PR 000050579 acts_upstream_of_or_within_positive_effect|NOT GO:0032635 PMID:28096466 ECO:0000314 20220126 MGI contributor=https://orcid.org/0000-0003-2689-5511|model-state=production|noctua-model-id=gomodel:61e0e55600001747
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PR 000050578 acts_upstream_of_or_within_positive_effect GO:0032635 PMID:28096466 ECO:0000314 20220126 MGI contributor=https://orcid.org/0000-0003-2689-5511|model-state=production|noctua-model-id=gomodel:61e0e55600001747
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PR P51450-2 acts_upstream_of_or_within GO:0032620 PMID:25470037 ECO:0000315 20160817 MGI model-state=production|noctua-model-id=gomodel:MGI_MGI_104856|contributor=https://orcid.org/0000-0002-9796-7693
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PR Q8CCH7 enables GO:0008134 PMID:10225993 ECO:0000353 PR:Q08369 20090410 MGI has_input(PR:Q08369) noctua-model-id=gomodel:MGI_MGI_1334444|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PR Q8CCH7-1 enables GO:0008134 PMID:17445768 ECO:0000353 PR:Q08369 20090410 MGI has_input(PR:Q08369) noctua-model-id=gomodel:MGI_MGI_1334444|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PR Q99KW3-1 acts_upstream_of_or_within GO:0009790 PMID:20510926 ECO:0000315 20171220 MGI model-state=production|contributor=https://orcid.org/0000-0002-9796-7693|noctua-model-id=gomodel:MGI_MGI_1349410
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PR 000044810 located_in GO:0005622 PMID:18996085 ECO:0000314 20150413 MGI part_of(CL:0000023) contributor=https://orcid.org/0000-0001-5501-853X|noctua-model-id=gomodel:MGI_MGI_1353427|model-state=production
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PR Q9EPR2-2 located_in GO:0005622 PMID:11278438 ECO:0000314 20110420 MGI contributor=https://orcid.org/0000-0001-7476-6306|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production|noctua-model-id=gomodel:MGI_MGI_1913600

gorule-0000011

total: 0

gorule-0000013

total: 0

gorule-0000015

total: 0

gorule-0000016

total: 0

gorule-0000017

total: 0

gorule-0000018

total: 0

gorule-0000020

total: 1

Messages

ERROR - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0051270) -- PR P15535-1 acts_upstream_of_or_within GO:0051270 PMID:8134355 ECO:0000314 20080811 MGI contributor=https://orcid.org/0000-0001-7476-6306|noctua-model-id=gomodel:MGI_MGI_95705|model-state=production

gorule-0000026

total: 0

gorule-0000029

total: 0

gorule-0000030

total: 0

gorule-0000037

total: 0

gorule-0000039

total: 0

gorule-0000042

total: 0

gorule-0000043

total: 0

gorule-0000046

total: 3

Messages

WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- PR Q5SXI5-2 enables GO:0043621 PMID:20538088 ECO:0000353 PR:Q5SXI5-1 20140415 MGI has_input(PR:Q5SXI5-1) noctua-model-id=gomodel:MGI_MGI_2679270|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production
WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- PR Q5SXI5-1 enables GO:0043621 PMID:20538088 ECO:0000353 PR:Q5SXI5-2 20101223 MGI has_input(PR:Q5SXI5-2) noctua-model-id=gomodel:MGI_MGI_2679270|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production
WARNING - Violates GO Rule: GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms -- PR Q5SXI5-3 enables GO:0043621 PMID:20538088 ECO:0000314 20101223 MGI noctua-model-id=gomodel:MGI_MGI_2679270|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production

gorule-0000050

total: 0

gorule-0000055

total: 0

gorule-0000057

total: 0

gorule-0000058

total: 0

gorule-0000061

total: 15

Messages

WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432 -- PR Q80VY9-1 part_of GO:0005634 PMID:29864424 ECO:0000269 20210222 MGI noctua-model-id=gomodel:5c4605cc00003107|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432 -- PR 000050061 part_of GO:0005634 PMID:29864424 ECO:0000269 20210222 MGI noctua-model-id=gomodel:5c4605cc00003107|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432 -- PR 000050061 part_of GO:0005730 PMID:29864424 ECO:0000269 20210222 MGI noctua-model-id=gomodel:5c4605cc00003107|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432 -- PR Q80VY9-1 part_of GO:0005730 PMID:29864424 ECO:0000269 20210222 MGI noctua-model-id=gomodel:5c4605cc00003107|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432 -- PR O55143-1 part_of GO:0005789 PMID:27923914 ECO:0000314 20190516 MGI contributor=https://orcid.org/0000-0001-5501-853X|noctua-model-id=gomodel:5c4605cc00004008|model-state=production
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432 -- PR Q8VC65-1 part_of GO:0031965 PMID:28600179 ECO:0000269 20190523 MGI contributor=https://orcid.org/0000-0003-2689-5511|model-state=production|noctua-model-id=gomodel:5ce58dde00000043
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432 -- PR A0A1W6AWH1 part_of GO:0031965 PMID:28600179 ECO:0000269 20190607 MGI contributor=https://orcid.org/0000-0003-2689-5511|model-state=production|noctua-model-id=gomodel:5ce58dde00000043
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432 -- PR Q9D9W1-1 part_of GO:0005737 PMID:20643351 ECO:0000314 20200129 MGI part_of(CL:0000136) noctua-model-id=gomodel:5df932e000001688|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432 -- PR Q9D9W1-2 part_of GO:0005634 PMID:20643351 ECO:0000314 20200129 MGI part_of(CL:0000136) noctua-model-id=gomodel:5df932e000001688|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432 -- PR Q9D9W1-1 part_of GO:0036064 PMID:20643351 ECO:0000314 20200213 MGI part_of(CL:0002209),part_of(EMAPA:16075) noctua-model-id=gomodel:5df932e000001688|contributor=https://orcid.org/0000-0003-2689-5511|model-state=production
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432 -- PR Q2QI47-3 part_of GO:0032420 PMID:16301217 ECO:0000314 20200421 MGI part_of(CL:0000601),part_of(EMAPA:16194) contributor=https://orcid.org/0000-0003-2689-5511|model-state=production|noctua-model-id=gomodel:5e72450500002394
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432 -- PR Q2QI47-3 part_of|NOT GO:0032420 PMID:16301217 ECO:0000314 20200421 MGI part_of(EMAPA:16194),part_of(XAO:0004130) contributor=https://orcid.org/0000-0003-2689-5511|model-state=production|noctua-model-id=gomodel:5e72450500002394
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432 -- PR Q7TSK2-1 part_of GO:0005886 PMID:7488116 ECO:0000264 20201216 MGI contributor=https://orcid.org/0000-0003-2689-5511|model-state=production|noctua-model-id=gomodel:5fce9b7300000722
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432 -- PR Q7TSK2-2 part_of GO:0005886 PMID:7488116 ECO:0000264 20201216 MGI contributor=https://orcid.org/0000-0003-2689-5511|model-state=production|noctua-model-id=gomodel:5fce9b7300000722
WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432 -- PR Q7TSK2-3 part_of GO:0005615 PMID:7488116 ECO:0000255 20201216 MGI contributor=https://orcid.org/0000-0003-2689-5511|model-state=production|noctua-model-id=gomodel:5fce9b7300000722

other

total: 0

Table of contents

Report

Group: unknown - Dataset: unknown

SUMMARY

Header From Original Association File

Contents

MESSAGES

gorule-0000001

Messages

gorule-0000002

gorule-0000006

gorule-0000007

gorule-0000008

Messages

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

gorule-0000017

gorule-0000018

gorule-0000020

Messages

gorule-0000026

gorule-0000029

gorule-0000030

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

Messages

gorule-0000050

gorule-0000055

gorule-0000057

gorule-0000058

gorule-0000061

Messages

other

Predictions

Predictions (experimental)