Table of contents

Report

Group: mgi - Dataset: mgi

SUMMARY

This report generated on 2020-11-25

Header From Original Association File

!gaf-version: 2.1
!software version: $Revision$
!date: 11/25/2020 $
!
! from Mouse Genome Database (MGD) & Gene Expression Database (GXD)
!
!1. DB MGI
!2. DB Object ID MGI:xxxx
!3. DB Object Symbol
!4. Qualifier
!5. GO ID GO:xxxx
!6. DB:Reference(s) MGI:MGI:xxxx|PMID:xxxx
!7. Evidence Code 3-digit (not ECO:xxxx)
!8. With (or)From optional
!9. Aspect (GO DAG Abbreviation (F, P, C))
!10. DB Object Name optional
!11. DB Object Synonym(s) optional
!12. DB Object Type
!13. Taxon taxon:10090
!14. Date YYYYMMDD
!15. Assigned By
!16. Annotation Extension same as GPAD/col 11
!17. Gene Product Form ID Isorform
!

Contents

gorule-0000001

gorule-0000002

gorule-0000006

gorule-0000007

gorule-0000008

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

gorule-0000017

gorule-0000018

gorule-0000020

gorule-0000027

gorule-0000028

gorule-0000029

gorule-0000030

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

gorule-0000050

gorule-0000055

gorule-0000057

gorule-0000058

other

MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.1 specifications

Messages

gorule-0000002

No 'NOT' annotations to 'protein binding ; GO:0005515'

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

Messages

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

gorule-0000013

Taxon-appropriate annotation check

Messages

gorule-0000015

Dual species taxon check

gorule-0000016

With/From: IC annotations require a With/From GO ID

gorule-0000017

IDA annotations must not have a With/From entry

gorule-0000018

IPI annotations require a With/From entry

Messages

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

gorule-0000027

Each identifier in GAF is valid

Messages

gorule-0000028

Aspect can only be one of C, P, F and should be repaired using the GO term

gorule-0000029

IEAs should be less than one year old.

gorule-0000030

Deprecated GO_REFs are not allowed

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

gorule-0000043

Check for valid combination of evidence code and GO_REF

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

Messages