Table of contents

Summary

GAF summary

Found 419956 annotations in 419999 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000014 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000014) Valid GO term ID, there are 76 violations with type Error.

For rule GO_AR:0000003 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000003) Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field, there are 39 violations with type Warning.

For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008) No annotations should be made to uninformative high level terms, there are 954 violations with type Warning.

For rule GO_AR:0000014 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000014) Valid GO term ID, there are 2 violations with type Warning.

For rule GO_AR:0000017 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000017) IDA annotations must not have a With/From entry, there is one violation with type Warning.

For rule GO_AR:0000018 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000018) IPI annotations require a With/From entry, there are 378 violations with type Warning.

GAF Prediction Summary

Found 2571 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf    go/releases/2020-02-11/extensions/go-gaf.owl

Report

Group: mgi - Dataset: mgi

SUMMARY

This report generated on 2020-02-12

Header From Original Association File

!gaf-version: 2.1
!software version: $Revision$
!date: 02/11/2020 $
!
! from Mouse Genome Database (MGD) & Gene Expression Database (GXD)
!
! 1. DB MGI
! 2. DB Object ID MGI:xxxx
! 3. DB Object Symbol
! 4. Qualifier
! 5. GO ID GO:xxxx
! 6. DB:Reference(s) MGI:MGI:xxxx|PMID:xxxx
! 7. Evidence Code 3-digit (not ECO:xxxx)
! 8. With (or)From optional
! 9. Aspect (GO DAG Abbreviation (F, P, C))
! 10. DB Object Name optional
! 11. DB Object Synonym(s) optional
! 12. DB Object Type
! 13. Taxon taxon:10090
! 14. Date YYYYMMDD
! 15. Assigned By
! 16. Annotation Extension same as GPAD/col 11
! 17. Gene Product Form ID Isorform
!

Contents

gorule-0000002

gorule-0000006

gorule-0000007

gorule-0000008

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

gorule-0000017

gorule-0000018

gorule-0000027

gorule-0000028

gorule-0000029

gorule-0000030

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

gorule-0000050

other

MESSAGES

gorule-0000002

No 'NOT' annotations to 'protein binding ; GO:0005515'

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

Messages

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

gorule-0000013

Taxon-appropriate annotation check

Messages

gorule-0000015

Dual species taxon check

gorule-0000016

With/From: IC annotations require a With/From GO ID

gorule-0000017

IDA annotations must not have a With/From entry

Messages

gorule-0000018

IPI annotations require a With/From entry

Messages

gorule-0000027

Each identifier in GAF is valid

Messages

gorule-0000028

Aspect can only be one of C, P, F and should be repaired using the GO term

gorule-0000029

All IEAs over a year old are removed

gorule-0000030

Deprecated GO_REFs are not allowed

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

gorule-0000043

Check for valid combination of evidence code and GO_REF

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

Messages

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

other

OWLTools check

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #419956 annotations in 419999 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000014 Valid GO term ID Error count: 76
28012 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:1889277 Astn2 GO:2000009 MGI:MGI:4459565|PMID:20573900 IDA P astrotactin 2 1d8|Astnl protein taxon:10090 20130219 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:1098567)
41538 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:88223 C1qa GO:0098883 MGI:MGI:6275119|PMID:27033548 IGI UniProtKB:P14106|UniProtKB:Q02105 P complement component 1, q subcomponent, alpha polypeptide C1q protein taxon:10090 20190104 ARUK-UCL has_agent(ComplexPortal:CPX-1180),occurs_in(EMAPA:35357)|has_agent(ComplexPortal:CPX-1180),occurs_in(EMAPA:35405)
41538 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:88223 C1qa GO:0098883 MGI:MGI:6275119|PMID:27033548 IGI UniProtKB:P14106|UniProtKB:Q02105 P complement component 1, q subcomponent, alpha polypeptide C1q protein taxon:10090 20190104 ARUK-UCL has_agent(ComplexPortal:CPX-1180),occurs_in(EMAPA:35357)|has_agent(ComplexPortal:CPX-1180),occurs_in(EMAPA:35405)
41556 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:88224 C1qb GO:0098883 MGI:MGI:6275119|PMID:27033548 IGI UniProtKB:P98086|UniProtKB:Q02105 P complement component 1, q subcomponent, beta polypeptide protein taxon:10090 20190104 ARUK-UCL has_agent(ComplexPortal:CPX-1180),occurs_in(EMAPA:35357)|has_agent(ComplexPortal:CPX-1180),occurs_in(EMAPA:35405)
41556 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:88224 C1qb GO:0098883 MGI:MGI:6275119|PMID:27033548 IGI UniProtKB:P98086|UniProtKB:Q02105 P complement component 1, q subcomponent, beta polypeptide protein taxon:10090 20190104 ARUK-UCL has_agent(ComplexPortal:CPX-1180),occurs_in(EMAPA:35357)|has_agent(ComplexPortal:CPX-1180),occurs_in(EMAPA:35405)
41626 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:88225 C1qc GO:0098883 MGI:MGI:6275119|PMID:27033548 IGI UniProtKB:P14106|UniProtKB:P98086 P complement component 1, q subcomponent, C chain C1qg protein taxon:10090 20190104 ARUK-UCL has_agent(ComplexPortal:CPX-1180),occurs_in(EMAPA:35357)|has_agent(ComplexPortal:CPX-1180),occurs_in(EMAPA:35405)
41626 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:88225 C1qc GO:0098883 MGI:MGI:6275119|PMID:27033548 IGI UniProtKB:P14106|UniProtKB:P98086 P complement component 1, q subcomponent, C chain C1qg protein taxon:10090 20190104 ARUK-UCL has_agent(ComplexPortal:CPX-1180),occurs_in(EMAPA:35357)|has_agent(ComplexPortal:CPX-1180),occurs_in(EMAPA:35405)
42026 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:88227 C3 GO:1905114 MGI:MGI:6189359|PMID:22632727 IMP P complement component 3 acylation stimulating protein|complement factor 3|Plp protein taxon:10090 20180627 ARUK-UCL has_agent(CL:0000740),occurs_in(CL:0000129),occurs_in(EMAPA:35290),occurs_in(UBERON:0009953)
52392 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:2442358 Cd300ld GO:0032675 MGI:MGI:3721207|PMID:17543387 IDA P CD300 molecule like family member d 4732429D16Rik|Cd300ld1|Clm5|MAIR-IV protein taxon:10090 20140402 MGI has_agent(CL:0000775)
52393 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:2442358 Cd300ld GO:0032680 MGI:MGI:3721207|PMID:17543387 IDA P CD300 molecule like family member d 4732429D16Rik|Cd300ld1|Clm5|MAIR-IV protein taxon:10090 20140402 MGI has_agent(CL:0000775)
64059 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:1929209 Cldn18 GO:1900181 MGI:MGI:5489769|PMID:22437732 IDA P claudin 18 protein taxon:10090 20151021 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:1341872)
68341 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:109474 Commd1 GO:2000010 MGI:MGI:5806548|PMID:26965651 IMP MGI:MGI:2176228|MGI:MGI:5315712 P COMM domain containing 1 Murr1 protein taxon:10090 20170301 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:96765)
73684 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:1196405 Ctdspl2 GO:0046827 MGI:MGI:5613417|PMID:25100727 IMP P CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 D2Ertd485e|SCP4 protein taxon:10090 20150127 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:109452)
78226 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:106040 Cyp51 GO:0042177 MGI:MGI:6270905|PMID:20876579 IMP P cytochrome P450, family 51 protein taxon:10090 20181112 ARUK-UCL has_agent(CL:0000129),has_regulation_target(UniProtKB:Q9JHR7),occurs_in(GO:0005615),part_of(GO:1900222)
78229 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:106040 Cyp51 GO:0050709 MGI:MGI:6270905|PMID:20876579 IMP P cytochrome P450, family 51 protein taxon:10090 20181112 ARUK-UCL has_agent(CL:0000129),has_regulation_target(UniProtKB:Q9JHR7),occurs_in(GO:0005615),part_of(GO:0042177),part_of(GO:1900222)
80319 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:1330861 Dclk1 GO:1900181 MGI:MGI:3690293|PMID:16684769 IDA P doublecortin-like kinase 1 1700113D08Rik|2810480F11Rik|Click-I|CPG16|Dcamkl1|Dcl|DCLK protein taxon:10090 20160120 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:1921593)
80337 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:1918012 Dclk2 GO:1900181 MGI:MGI:3690293|PMID:16684769 IDA P doublecortin-like kinase 2 6330415M09Rik|Click-II|Dcamkl2 protein taxon:10090 20160120 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:1921593)
80352 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:3039580 Dclk3 GO:1900181 MGI:MGI:3690293|PMID:16684769 IDA P doublecortin-like kinase 3 Click-I, -II related|Dcamkl3 protein taxon:10090 20160120 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:1921593)
85018 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:107231 Dlg1 GO:0002369 MGI:MGI:3528803|PMID:15699074 IMP P discs large MAGUK scaffold protein 1 B130052P05Rik|Dlgh1|SAP97 protein taxon:10090 20080508 MGI has_agent(CL:0000084)
105936 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:95484 Fas GO:0002377 MGI:MGI:3773559|PMID:18199416 IMP MGI:MGI:1856334 P Fas (TNF receptor superfamily member 6) APO-1|CD95|TNFR6|Tnfrsf6 protein taxon:10090 20080418 MGI has_agent(CL:0000084)
118297 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:95660 Gas6 GO:0010934 MGI:MGI:3773112|PMID:18188450 IMP MGI:MGI:2675495 P growth arrest specific 6 Gas-6|GAS 6|growth arrest-specific protein taxon:10090 20101111 MGI has_agent(CL:0000235)
118923 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:95664 Gata4 GO:0010629 MGI:MGI:5780531|PMID:25590961 IDA P GATA binding protein 4 Gata-4 protein taxon:10090 20160428 BHF-UCL has_agent(GO:0070062),occurs_in(CL:0000746),regulates_expression_of(MGI:MGI:1197519)
139955 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:2384768 Hectd1 GO:1903077 MGI:MGI:5427282|PMID:22431752 IMP MGI:MGI:2137552|MGI:MGI:3706565 P HECT domain E3 ubiquitin protein ligase 1 A630086P08Rik|b2b327Clo|opm protein taxon:10090 20150115 MGI regulates_o_transports_or_maintains_localization_of(PR:000044494)
142806 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:96159 Hmgcr GO:0042177 MGI:MGI:6270905|PMID:20876579 IMP P 3-hydroxy-3-methylglutaryl-Coenzyme A reductase 3-hydroxy-3-methylglutaryl-CoA reductase|HMG-CoAR|Red protein taxon:10090 20181112 ARUK-UCL has_agent(CL:0000129),has_regulation_target(UniProtKB:Q9JHR7),occurs_in(GO:0005615),part_of(GO:1900222)
142817 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:96159 Hmgcr GO:0050709 MGI:MGI:6270905|PMID:20876579 IMP P 3-hydroxy-3-methylglutaryl-Coenzyme A reductase 3-hydroxy-3-methylglutaryl-CoA reductase|HMG-CoAR|Red protein taxon:10090 20181112 ARUK-UCL has_agent(CL:0000129),has_regulation_target(UniProtKB:Q9JHR7),occurs_in(GO:0005615),part_of(GO:0042177),part_of(GO:1900222)
149022 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:96412 Ide GO:0030163 MGI:MGI:6270905|PMID:20876579 IMP P insulin degrading enzyme 1300012G03Rik|4833415K22Rik protein taxon:10090 20181112 ARUK-UCL has_agent(CL:0000129),has_input(UniProtKB:P12023:PRO_0000000119),occurs_in(GO:0005615),part_of(GO:0097242)
149046 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:96412 Ide GO:0097242 MGI:MGI:6270905|PMID:20876579 IMP P insulin degrading enzyme 1300012G03Rik|4833415K22Rik protein taxon:10090 20181112 ARUK-UCL has_agent(CL:0000129),has_input(UniProtKB:P12023:PRO_0000000119),occurs_in(GO:0005615)
149493 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:1277180 Ifi27 GO:0046825 MGI:MGI:5581598|PMID:22427340 IMP MGI:MGI:5582315 P interferon, alpha-inducible protein 27 1110013J02Rik|2900026P10Rik|D12Ertd647e|Ifi27l1 protein taxon:10090 20140916 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:1352454)
154260 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:96559 Il6 GO:0014015 MGI:MGI:5662144|PMID:26134658 IMP P interleukin 6 Il-6 protein taxon:10090 20181126 ARUK-UCL has_agent(CL:0000129),part_of(GO:0071222)
154459 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:96562 Il7r GO:0002377 MGI:MGI:3581459|PMID:15909309 IGI MGI:MGI:98936|MGI:MGI:98937 P interleukin 7 receptor CD127|IL-7Ralpha|IL-7 receptor alpha chain protein taxon:10090 20080922 MGI has_agent(CL:0000236),occurs_in(EMAPA:18767)
154513 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:2146574 Ildr1 GO:0090277 MGI:MGI:5514075|PMID:23863714 IDA P immunoglobulin-like domain containing receptor 1 protein taxon:10090 20140205 MGI has_input(CHEBI:28868),occurs_in(CL:0002277),regulates_o_occurs_in(CL:0002277),regulates_o_transports_or_maintains_localization_of(UniProtKB:Q8R041)
158416 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:96607 Itgam GO:0150062 MGI:MGI:6189359|PMID:22632727 IMP P integrin alpha M Cd11b|CD11b/CD18|CD11B (p170)|complement component receptor 3 alpha|complement receptor type 3|CR3|F730045J24Rik|Ly-40|Mac-1|Mac-1a|Mac-1 alpha protein taxon:10090 20180730 ARUK-UCL has_agent(CL:0000129),occurs_in(EMAPA:35290),occurs_in(UBERON:0009953),part_of(GO:0150064),results_in_maturation_of(CL:0000740)
158417 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:96607 Itgam GO:0150064 MGI:MGI:6189359|PMID:22632727 IMP P integrin alpha M Cd11b|CD11b/CD18|CD11B (p170)|complement component receptor 3 alpha|complement receptor type 3|CR3|F730045J24Rik|Ly-40|Mac-1|Mac-1a|Mac-1 alpha protein taxon:10090 20180730 ARUK-UCL has_agent(CL:0000129),has_agent(GO:0043005),occurs_in(EMAPA:35290),occurs_in(UBERON:0009953),results_in_maturation_of(CL:0000740)
158417 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:96607 Itgam GO:0150064 MGI:MGI:6189359|PMID:22632727 IMP P integrin alpha M Cd11b|CD11b/CD18|CD11B (p170)|complement component receptor 3 alpha|complement receptor type 3|CR3|F730045J24Rik|Ly-40|Mac-1|Mac-1a|Mac-1 alpha protein taxon:10090 20180730 ARUK-UCL has_agent(CL:0000129),has_agent(GO:0043005),occurs_in(EMAPA:35290),occurs_in(UBERON:0009953),results_in_maturation_of(CL:0000740)
158421 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:96607 Itgam GO:1905114 MGI:MGI:6189359|PMID:22632727 IMP P integrin alpha M Cd11b|CD11b/CD18|CD11B (p170)|complement component receptor 3 alpha|complement receptor type 3|CR3|F730045J24Rik|Ly-40|Mac-1|Mac-1a|Mac-1 alpha protein taxon:10090 20180627 ARUK-UCL has_agent(CL:0000740),occurs_in(CL:0000129),occurs_in(EMAPA:35290),occurs_in(UBERON:0009953)
173828 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:96794 Lmna GO:1900180 MGI:MGI:5492001|PMID:22349700 IMP P lamin A Dhe|lamin A/C protein taxon:10090 20130829 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:1196277)
175037 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:2443718 Lrig2 GO:2000010 MGI:MGI:5702499|PMID:26651291 IMP P leucine-rich repeats and immunoglobulin-like domains 2 4632419I10Rik protein taxon:10090 20161012 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:1097159)
177623 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:1919835 Lypd1 GO:1903077 MGI:MGI:5694852|PMID:26276394 IDA P Ly6/Plaur domain containing 1 2700050C12Rik|C530008O16Rik|Lynx2 protein taxon:10090 20160518 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:87888)
178630 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:1930187 Maged1 GO:1900181 MGI:MGI:4359364|PMID:17488777 IDA P melanoma antigen, family D, 1 2810433C11Rik|5430405L04Rik|Dlxin-1|DXBwg1492e|MAGE-D1|Nrage protein taxon:10090 20190625 MGI regulates_o_transports_or_maintains_localization_of(UniProtKB:Q9JKX4)
186944 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:104532 Mgat3 GO:1902966 MGI:MGI:5751042|PMID:25592972 IMP MGI:MGI:1857830 P mannoside acetylglucosaminyltransferase 3 1110038J12Rik|GnT-III protein taxon:10090 20180802 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:1346542)
197237 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:2179432 Mycbp2 GO:0032880 MGI:MGI:3776727|PMID:18031680 IMP MGI:MGI:3777464 P MYC binding protein 2, E3 ubiquitin protein ligase C130061D10Rik|Pam|Phr1 protein taxon:10090 20080618 MGI regulates_o_occurs_in(CL:0000100),regulates_o_occurs_in(EMAPA:17577),regulates_o_transports_or_maintains_localization_of(MGI:MGI:1346881)
208484 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:2653833 Nlrp3 GO:0032611 MGI:MGI:5446983|PMID:22753929 IMP MGI:MGI:5465108 P NLR family, pyrin domain containing 3 Cias1|cryopyrin|Mmig1|NALP3|Pypaf1 protein taxon:10090 20130729 MGI has_agent(CL:0000235)
211758 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:108077 Nptn GO:1902683 MGI:MGI:5581388|PMID:24554721 IMP MGI:MGI:5621191 P neuroplastin Sdfr1 protein taxon:10090 20160406 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:95614)
244957 GO_AR:0000014 Error The id 'CL:1000451' in the c16 annotation extension is an obsolete class, suggested replacements: CL:0000653 MGI MGI:102524 Pou4f2 GO:0005634 MGI:MGI:5284812|PMID:12609742 IDA C POU domain, class 4, transcription factor 2 Brn-3.2|Brn3b|Brn-3b|mBrn3-3R|Pou4f-rs1 protein taxon:10090 20120228 UniProt part_of(CL:1000451)
246176 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:99878 Ppm1a GO:0046827 MGI:MGI:5613417|PMID:25100727 IMP P protein phosphatase 1A, magnesium dependent, alpha isoform 2310003C21Rik|2900017D14Rik|MMPa-2|MPPa-1|Mpp alpha protein taxon:10090 20150127 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:109452)
251283 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:97769 Prnp GO:0032147 MGI:MGI:5882868|PMID:23386614 IGI ComplexPortal:CPX-1134 P prion protein CD230|Prn-i|Prn-p|PrP|PrPC|PrPSc|Sinc protein taxon:10090 20170626 ARUK-UCL has_agent(GO:0045121),has_regulation_target(UniProtKB:P06241)
251342 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:97769 Prnp GO:1903078 MGI:MGI:5882868|PMID:23386614 IMP P prion protein CD230|Prn-i|Prn-p|PrP|PrPC|PrPSc|Sinc protein taxon:10090 20170626 ARUK-UCL has_agent(GO:0045121),has_regulation_target(ComplexPortal:CPX-1134)
254156 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:105373 Ptch1 GO:0032880 MGI:MGI:3619173|PMID:16489008 IMP MGI:MGI:2675356 P patched 1 A230106A15Rik|Patched 1|Ptc|Ptc1|wig protein taxon:10090 20110105 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:88302)|regulates_o_transports_or_maintains_localization_of(MGI:MGI:88313)
254156 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:105373 Ptch1 GO:0032880 MGI:MGI:3619173|PMID:16489008 IMP MGI:MGI:2675356 P patched 1 A230106A15Rik|Patched 1|Ptc|Ptc1|wig protein taxon:10090 20110105 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:88302)|regulates_o_transports_or_maintains_localization_of(MGI:MGI:88313)
269678 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:1922484 Rnf19b GO:0072643 MGI:MGI:4430768|PMID:19915045 IMP MGI:MGI:4436863 P ring finger protein 19B 4930534K13Rik|4930555L03Rik|Ibrdc3 protein taxon:10090 20130529 MGI has_agent(CL:0000623)
275382 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:88244 S100a8 GO:0002793 MGI:MGI:3835701|PMID:18820689 IMP P S100 calcium binding protein A8 (calgranulin A) 60B8Ag|B8Ag|Caga|CFAg|CP-10|MRP8|p8 protein taxon:10090 20140910 MGI occurs_in(EMAPA:16728)|regulates_o_transports_or_maintains_localization_of(UniProtKB:P04918)
275383 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:88244 S100a8 GO:0002793 MGI:MGI:3835701|PMID:18820689 IDA P S100 calcium binding protein A8 (calgranulin A) 60B8Ag|B8Ag|Caga|CFAg|CP-10|MRP8|p8 protein taxon:10090 20140910 MGI occurs_in(EMAPA:16728)|regulates_o_transports_or_maintains_localization_of(UniProtKB:P04918)
275418 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:1338947 S100a9 GO:0002793 MGI:MGI:3835701|PMID:18820689 IMP P S100 calcium binding protein A9 (calgranulin B) 60B8Ag|BEE22|Cagb|GAGB|L1Ag|MRP14|p14 protein taxon:10090 20140910 MGI occurs_in(EMAPA:16728)|regulates_o_transports_or_maintains_localization_of(UniProtKB:P04918)
275419 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:1338947 S100a9 GO:0002793 MGI:MGI:3835701|PMID:18820689 IDA P S100 calcium binding protein A9 (calgranulin B) 60B8Ag|BEE22|Cagb|GAGB|L1Ag|MRP14|p14 protein taxon:10090 20140910 MGI occurs_in(EMAPA:16728)|regulates_o_transports_or_maintains_localization_of(UniProtKB:P04918)
280161 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:97298 Septin2 GO:0032880 MGI:MGI:3041380|PMID:14723703 IDA P septin 2 Nedd5|Sept2 protein taxon:10090 20081010 MGI regulates_o_occurs_in(CL:0000644),regulates_o_transports_or_maintains_localization_of(MGI:MGI:99917)
284852 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:2446296 Sik3 GO:0032880 MGI:MGI:5316542|PMID:22318228 IMP MGI:MGI:5317918 P SIK family kinase 3 5730525O22Rik|9030204A07Rik protein taxon:10090 20130731 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:3036234)
290493 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:1923407 Slc35d3 GO:0070863 MGI:MGI:5573021|PMID:24550737 IMP MGI:MGI:3802578 P solute carrier family 35, member D3 6230421J19Rik|Frcl1 protein taxon:10090 20160302 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:99578)
299031 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:98351 Sod1 GO:0050766 MGI:MGI:6271924|PMID:25381879 IGI RNAcentral:URS0000021B51_10090 P superoxide dismutase 1, soluble B430204E11Rik|Cu(2+)-Zn2+ superoxide dismutase|CuZnSOD|Cu/Zn-SOD|Ipo1|Ipo-1|Sod-1|SODC protein taxon:10090 20181120 ARUK-UCL has_agent(CL:0000129)
310413 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:105931 Sycp1 GO:0032880 MGI:MGI:3664716|PMID:16968740 IMP MGI:MGI:3580000 P synaptonemal complex protein 1 SCP1 protein taxon:10090 20081008 MGI regulates_o_occurs_in(CL:0000017),regulates_o_transports_or_maintains_localization_of(MGI:MGI:1913904)|regulates_o_occurs_in(CL:0000017),regulates_o_transports_or_maintains_localization_of(MGI:MGI:1919096)|regulates_o_occurs_in(CL:0000017),regulates_o_transports_or_maintains_localization_of(MGI:MGI:1921325)
310413 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:105931 Sycp1 GO:0032880 MGI:MGI:3664716|PMID:16968740 IMP MGI:MGI:3580000 P synaptonemal complex protein 1 SCP1 protein taxon:10090 20081008 MGI regulates_o_occurs_in(CL:0000017),regulates_o_transports_or_maintains_localization_of(MGI:MGI:1913904)|regulates_o_occurs_in(CL:0000017),regulates_o_transports_or_maintains_localization_of(MGI:MGI:1919096)|regulates_o_occurs_in(CL:0000017),regulates_o_transports_or_maintains_localization_of(MGI:MGI:1921325)
310413 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:105931 Sycp1 GO:0032880 MGI:MGI:3664716|PMID:16968740 IMP MGI:MGI:3580000 P synaptonemal complex protein 1 SCP1 protein taxon:10090 20081008 MGI regulates_o_occurs_in(CL:0000017),regulates_o_transports_or_maintains_localization_of(MGI:MGI:1913904)|regulates_o_occurs_in(CL:0000017),regulates_o_transports_or_maintains_localization_of(MGI:MGI:1919096)|regulates_o_occurs_in(CL:0000017),regulates_o_transports_or_maintains_localization_of(MGI:MGI:1921325)
311764 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:101759 Syt4 GO:0014049 MGI:MGI:3047044|PMID:15197251 IMP P synaptotagmin IV protein taxon:10090 20160912 ParkinsonsUK-UCL has_agent(CL:0000127)
322443 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:1346060 Tlr2 GO:0014005 MGI:MGI:5307186|PMID:22198949 IGI UniProtKB:P05067|UniProtKB:P49768 P toll-like receptor 2 Ly105 protein taxon:10090 20170523 ARUK-UCL has_agent(CL:0002092),occurs_in(EMAPA:35405)
322456 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:1346060 Tlr2 GO:0032640 MGI:MGI:5307186|PMID:22198949 IGI UniProtKB:P05067|UniProtKB:P49768 P toll-like receptor 2 Ly105 protein taxon:10090 20170523 ARUK-UCL has_agent(CL:0002092),occurs_in(EMAPA:35405)
329602 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:1930005 Trem1 GO:0070945 MGI:MGI:5471912|PMID:23241959 IGI MGI:MGI:1930003 P triggering receptor expressed on myeloid cells 1 protein taxon:10090 20130911 MGI has_agent(CL:0000775)
329693 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:1913150 Trem2 GO:1900223 MGI:MGI:6254954|PMID:26949937 IMP P triggering receptor expressed on myeloid cells 2 Trem2a|Trem2b|Trem2c protein taxon:10090 20181116 ARUK-UCL has_agent(CL:0000129),occurs_in(EMAPA:16894)
334399 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:2155779 Ttbk2 GO:1903828 MGI:MGI:5493390|PMID:23141541 IMP MGI:MGI:5496675 P tau tubulin kinase 2 2610507N02Rik|B930008N24Rik|TTK protein taxon:10090 20151002 MGI occurs_in(CL:0000057),regulates_o_transports_or_maintains_localization_of(UniProtKB:Q7TSH4)
335616 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:1931086 Tusc2 GO:0071609 MGI:MGI:5435130|PMID:22513871 IMP MGI:MGI:3706236 P tumor suppressor 2, mitochondrial calcium regulator 1190001E22Rik|Fus1|Pdap2 protein taxon:10090 20121114 MGI has_agent(CL:0000084),occurs_in(EMAPA:18767)
336425 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:1277211 Tyrobp GO:0048678 MGI:MGI:5638298|PMID:25690660 IMP P TYRO protein tyrosine kinase binding protein DAP12|KARAP|killer cell activating receptor associated protein protein taxon:10090 20190103 ARUK-UCL has_agent(EMAPA:17269),occurs_in(CL:0000129)
344240 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:98936 Vpreb1 GO:0002377 MGI:MGI:3581459|PMID:15909309 IGI MGI:MGI:96562|MGI:MGI:98937 P pre-B lymphocyte gene 1 CD179a|Vpreb-1 protein taxon:10090 20080922 MGI has_agent(CL:0000236),occurs_in(EMAPA:18767)
345208 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:3039619 Vtcn1 GO:0072602 MGI:MGI:3655569|PMID:16914726 IMP MGI:MGI:3663315 P V-set domain containing T cell activation inhibitor 1 B7-H4|B7x protein taxon:10090 20120820 MGI has_agent(CL:0000084)
345209 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:3039619 Vtcn1 GO:0072643 MGI:MGI:3655569|PMID:16914726 IMP MGI:MGI:3663315 P V-set domain containing T cell activation inhibitor 1 B7-H4|B7x protein taxon:10090 20120820 MGI has_agent(CL:0000084)
345712 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:1916017 Washc1 GO:2000010 MGI:MGI:5806548|PMID:26965651 IDA P WASH complex subunit 1 1110049F14Rik|ORF19|Wash|Wash1 protein taxon:10090 20170308 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:96765)
345713 GO_AR:0000014 Error The relation 'regulates_o_transports_or_maintains_localization_of' in the c16 annotation extension is a dangling reference MGI MGI:1916017 Washc1 GO:2000010 MGI:MGI:5806548|PMID:26965651 IMP P WASH complex subunit 1 1110049F14Rik|ORF19|Wash|Wash1 protein taxon:10090 20170308 MGI regulates_o_transports_or_maintains_localization_of(MGI:MGI:96765)
347298 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation MGI MGI:98953 Wnt1 GO:1903204 MGI:MGI:5770063|PMID:21752258 IMP P wingless-type MMTV integration site family, member 1 Int-1|Wnt-1 protein taxon:10090 20160914 ParkinsonsUK-UCL has_agent(CL:0000127),regulates_o_occurs_in(CL:2000097)
348624 GO_AR:0000014 Error The id 'CL:1000451' in the c16 annotation extension is an obsolete class, suggested replacements: CL:0000653 MGI MGI:98968 Wt1 GO:0005634 MGI:MGI:5284812|PMID:12609742 IDA C Wilms tumor 1 homolog D630046I19Rik|Wt-1 protein taxon:10090 20120228 UniProt part_of(CL:1000451)
#------------
# GO_AR:0000003 Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field Warning count: 39
3073 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:2442953 9630013A20Rik GO:0005515 MGI:MGI:6114313|PMID:28041882 IPI F RIKEN cDNA 9630013A20 gene lncOL1 gene taxon:10090 20190918 MGI has_input(MGI:MGI:1261758)
41379 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:5434104 Bvht GO:0005515 MGI:MGI:5559147|PMID:23352431 IPI F braveheart long non-coding RNA Gm20748 gene taxon:10090 20190806 MGI has_input(MGI:MGI:1261758)
46199 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:4439832 Carmn GO:0005515 MGI:MGI:5694641|PMID:26423156 IPI F cardiac mesoderm enhancer-associated non-coding RNA Carmen|Mir143hg gene taxon:10090 20190725 MGI has_input(MGI:MGI:107940),has_input(MGI:MGI:1261758)
59622 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:88385 Cfh GO:0005515 MGI:MGI:6104494|PMID:29070671 IPI F complement component factor h Mud-1|Sas1|Sas-1 protein taxon:10090 20191107 MGI has_input(MGI:MGI:97769)
59623 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:88385 Cfh GO:0005515 MGI:MGI:6111924|PMID:28228282 IPI F complement component factor h Mud-1|Sas1|Sas-1 protein taxon:10090 20191107 MGI has_input(MGI:MGI:96607)
70446 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:2136343 Crb1 GO:0005515 MGI:MGI:3051713|PMID:15316081 IPI F crumbs family member 1, photoreceptor morphogenesis associated 7530426H14Rik|A930008G09Rik protein taxon:10090 20200115 MGI has_input(MGI:MGI:1927339),has_input(PR:P52624)
89841 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:5446626 Dreh GO:0005515 MGI:MGI:5446619|PMID:23239537 IPI F down-regulated in hepatocellular carcinoma gene taxon:10090 20190806 MGI has_input(MGI:MGI:98932)
103769 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:88379 F13b GO:0005515 MGI:MGI:5645809|PMID:18224415 TAS F coagulation factor XIII, beta subunit Cf13b|Cf-13b protein taxon:10090 20160927 MGI part_of(GO:0007596)
106803 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:2446216 Fbxo2 GO:0005515 MGI:MGI:3573989|PMID:15723043 IDA F F-box protein 2 Fbs1|FBX2|NFB42|Prpl4 protein taxon:10090 20050901 MGI
106804 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:2446216 Fbxo2 GO:0005515 MGI:MGI:3576440|PMID:15809437 IDA F F-box protein 2 Fbs1|FBX2|NFB42|Prpl4 protein taxon:10090 20080812 MGI has_input(MGI:MGI:95819)
107031 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:1354743 Fbxo6 GO:0005515 MGI:MGI:2679753|PMID:12939278 IDA F F-box protein 6 FBG2|Fbs2|Fbx6b|Fbxo6b protein taxon:10090 20090903 UniProt
107032 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:1354743 Fbxo6 GO:0005515 MGI:MGI:5644019|PMID:21062743 IDA F F-box protein 6 FBG2|Fbs2|Fbx6b|Fbxo6b protein taxon:10090 20150602 ParkinsonsUK-UCL
112206 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:2444668 Fnip1 GO:0005515 MGI:MGI:5635927|PMID:25775561 TAS F folliculin interacting protein 1 A730024A03Rik protein taxon:10090 20160921 MGI has_input(MGI:MGI:2442184),negatively_regulates(GO:0003674),part_of(GO:0010823),part_of(GO:1904262)
112223 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:2683054 Fnip2 GO:0005515 MGI:MGI:5635927|PMID:25775561 TAS F folliculin interacting protein 2 D630023B12Rik protein taxon:10090 20160921 MGI has_input(MGI:MGI:2442184),negatively_regulates(GO:0003674),part_of(GO:0010823),part_of(GO:1904262)
126088 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:5589890 Gm30731 GO:0005515 MGI:MGI:5661755|PMID:25800779 IPI F predicted gene, 30731 lnc-pou3f2|Pnky gene taxon:10090 20190905 MGI has_input(MGI:MGI:97791),occurs_in(GO:0005634)
158356 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:96607 Itgam GO:0005515 MGI:MGI:6111924|PMID:28228282 IPI F integrin alpha M Cd11b|CD11b/CD18|CD11B (p170)|complement component receptor 3 alpha|complement receptor type 3|CR3|F730045J24Rik|Ly-40|Mac-1|Mac-1a|Mac-1 alpha protein taxon:10090 20191107 MGI has_input(MGI:MGI:88385)
171011 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:894762 Ldb1 GO:0005515 MGI:MGI:5697986|PMID:26494787 TAS F LIM domain binding 1 CLIM2 protein taxon:10090 20190125 MGI enabled_by(MGI:MGI:1919725),has_input(MGI:MGI:99783)
174128 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:3045386 Lncbate10 GO:0005515 MGI:MGI:5914794|PMID:28763438 IPI F brown adipose tissue enriched long noncoding RNA 10 A530050N04Rik gene taxon:10090 20190924 MGI has_input(MGI:MGI:1100851),has_input(MGI:MGI:1338822),has_input(MGI:MGI:1342295)
187167 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:3642848 Mhrt GO:0005515 MGI:MGI:5582757|PMID:25119045 IPI F myosin heavy chain associated RNA transcript D830015G02Rik gene taxon:10090 20190924 MGI has_input(MGI:MGI:88192)
187316 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:1918127 Micalcl GO:0005515 MGI:MGI:3811694|PMID:18590835 IPI F MICAL C-terminal like 4921517J23Rik|Ebitein1 protein taxon:10090 20190605 MGI has_input(MGI:MGI:1346858)
199658 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:6278009 Myoparr GO:0005515 MGI:MGI:6278090|PMID:30622218 IPI F myogenin promoter-associated myogenic regulatory antisense lncRNA gene taxon:10090 20190912 MGI has_input(MGI:MGI:1914290)
229153 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:5543919 Paupar GO:0005515 MGI:MGI:5551912|PMID:24488179 IPI F Pax6 upstream antisense RNA gene taxon:10090 20190829 MGI has_input(MGI:MGI:97490)
251246 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:97769 Prnp GO:0005515 MGI:MGI:6104494|PMID:29070671 IPI F prion protein CD230|Prn-i|Prn-p|PrP|PrPC|PrPSc|Sinc protein taxon:10090 20191107 MGI has_input(MGI:MGI:88385)
258814 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:1861441 Rab27a GO:0005515 MGI:MGI:6356112|PMID:29712939 IPI F RAB27A, member RAS oncogene family 2210402C08Rik|2410003M20Rik|4933437C11Rik protein taxon:10090 20200116 MGI has_input(MGI:MGI:1350931)
259715 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:105068 Rab7 GO:0005515 MGI:MGI:6356112|PMID:29712939 IPI F RAB7, member RAS oncogene family protein taxon:10090 20200116 MGI has_input(MGI:MGI:1350931)
260550 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:105128 Rad23b GO:0005515 MGI:MGI:5638941|PMID:25901318 IPI F RAD23 homolog B, nucleotide excision repair protein 0610007D13Rik|mHR23B protein taxon:10090 20190517 MGI has_input(MGI:MGI:103557)
269001 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:5610274 Rncr4 GO:0005515 MGI:MGI:6108693|PMID:28819115 IPI F retina expressed non-coding RNA 4 Gm37046 gene taxon:10090 20190911 MGI
279431 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:98280 Selp GO:0005515 MGI:MGI:3757618|PMID:8562500 IDA F selectin, platelet CD62P|Grmp|P-selectin protein taxon:10090 20071025 MGI
283546 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:98294 Shb GO:0005515 MGI:MGI:64405|PMID:8302579 IDA F src homology 2 domain-containing transforming protein B protein taxon:10090 20170704 MGI
283734 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:98297 Shh GO:0005515 MGI:MGI:2149274|PMID:11476578 IDA F sonic hedgehog Hhg1|Hx|Hxl3|M100081 protein taxon:10090 20091123 MGI occurs_in(EMAPA:32906)
297633 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:5453296 Snord60 GO:0005515 MGI:MGI:5554658|PMID:24174535 IPI F small nucleolar RNA, C/D box 60 Gm23519 gene taxon:10090 20200124 MGI has_input(MGI:MGI:95486)
297634 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:5453296 Snord60 GO:0005515 MGI:MGI:5554658|PMID:24174535 IPI F small nucleolar RNA, C/D box 60 Gm23519 gene taxon:10090 20190807 MGI has_input(MGI:MGI:1914384)
300084 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field MGI MGI:98364 Sox2 GO:0005515 MGI:MGI:5638941|PMID:25901318 IPI F SRY (sex determining region Y)-box 2 lcc|Sox-2|ysb protein taxon:10090 20190517 MGI has_input(MGI:MGI:103557)
305001 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the