This report generated on 2025-01-12
!gaf-version: 2.2
!generated-by: JaponicusDB
!date-generated: 2025-01-12T04:44
!URL: https://www.japonicusdb.org
!contact: helpdesk@pombase.org
No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'
IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''
IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC
IPI should not be used with GO:0003824 catalytic activity or descendents
No annotations should be made to uninformative high level terms
JaponicusDB SJAG_03088 fim1 involved_in GO:1904530 GO_REF:0000107 IEA PomBase:SPBC1778.06c P fimbrin protein taxon:4897 20250112 PomBaseJaponicusDB SJAG_04223 coq10 enables GO:0140104 GO_REF:0000107 IEA PomBase:SPCC16A11.07 F mitochondrial ubiquinone binding protein Coq10 protein taxon:4897 20250112 PomBaseJaponicusDB SJAG_04887 cdc8 involved_in GO:1904530 GO_REF:0000107 IEA PomBase:SPAC27F1.02c P tropomyosin protein taxon:4897 20250112 PomBaseJaponicusDB SJAG_04887 cdc8 enables GO:0098772 GO_REF:0000107 IEA PomBase:SPAC27F1.02c F tropomyosin protein taxon:4897 20250112 PomBaseND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
Taxon-appropriate annotation check
JaponicusDB SJAG_01958 mtl16 enables GO:0052907 GO_REF:0000107 IEA PomBase:SPAC27D7.08c F 23S rRNA/U6 snRNA (adenine-N(6))-methyltransferase Mtl16 protein taxon:4897 20250112 PomBaseDual species taxon check
With/From: IC annotations require a With/From GO ID
IDA annotations must not have a With/From entry
IPI annotations require a With/From entry
Automatic repair of annotations to merged or obsoleted terms
JaponicusDB SJAG_00637 rpc2 involved_in GO:0006360 GO_REF:0000108 IEA GO:0001054 P DNA-directed RNA polymerase III complex subunit Rpc2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_00731 rpc19 enables GO:0001054 GO_REF:0000033 IBA PANTHER:PTN000358824,SGD:S000005057 F DNA-directed RNA polymerase I and III subunit Rpc19 protein taxon:4897 20170228 GO_CentralJaponicusDB SJAG_01313 rpc10 enables GO:0001054 GO_REF:0000033 IBA PANTHER:PTN000248542,SGD:S000001185 F DNA-directed RNA polymerase I, II and III subunit Rpc10 protein taxon:4897 20170228 GO_CentralJaponicusDB SJAG_01444 rpc40 enables GO:0001054 GO_REF:0000033 IBA PANTHER:PTN000210383,PomBase:SPBC1289.07c,SGD:S000006314 F DNA-directed RNA polymerase I and III subunit Rpc40 protein taxon:4897 20200808 GO_CentralJaponicusDB SJAG_01713 rpb1 involved_in GO:0006360 GO_REF:0000108 IEA GO:0001054 P DNA-directed RNA polymerase II complex large subunit Rpb1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_01765 rpb10 enables GO:0001054 GO_REF:0000033 IBA PANTHER:PTN000602008,SGD:S000005736 F DNA-directed RNA polymerase I, II, and III subunit Rpb10 protein taxon:4897 20170228 GO_CentralJaponicusDB SJAG_02070 rpb8 enables GO:0001054 GO_REF:0000033 IBA PANTHER:PTN000099544,SGD:S000005750 F DNA-directed RNA polymerase I, II and III subunit Rpb8 protein taxon:4897 20170228 GO_CentralJaponicusDB SJAG_02101 rpb5 enables GO:0001054 GO_REF:0000033 IBA PANTHER:PTN000056681,SGD:S000000358 F DNA-directed RNA polymerase I, II and III subunit Rpb5 protein taxon:4897 20170228 GO_CentralJaponicusDB SJAG_03014 rpo41 involved_in GO:0006360 GO_REF:0000108 IEA GO:0001054 P mitochondrial RNA polymerase Rpo41 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03144 nuc1 involved_in GO:0006360 GO_REF:0000108 IEA GO:0001054 P DNA-directed RNA polymerase I complex large subunit Nuc1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03144 nuc1 enables GO:0001054 GO_REF:0000033 IBA PANTHER:PTN000453524,SGD:S000005868 F DNA-directed RNA polymerase I complex large subunit Nuc1 protein taxon:4897 20170228 GO_CentralJaponicusDB SJAG_03578 rpa2 enables GO:0001054 GO_REF:0000033 IBA PANTHER:PTN000465942,SGD:S000006214 F DNA-directed RNA polymerase I complex subunit Rpa2 protein taxon:4897 20170228 GO_CentralJaponicusDB SJAG_04030 rpb2 involved_in GO:0006360 GO_REF:0000108 IEA GO:0001054 P DNA-directed RNA polymerase II complex subunit Rpb2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_04261 rpb6 enables GO:0001054 GO_REF:0000033 IBA PANTHER:PTN008715205,SGD:S000006391 F DNA-directed RNA polymerase I, II and III subunit Rpb6 protein taxon:4897 20221201 GO_CentralJaponicusDB SJAG_04934 rpc1 involved_in GO:0006360 GO_REF:0000108 IEA GO:0001054 P DNA-directed RNA polymerase III complex large subunit Rpc1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_00637 rpc2 involved_in GO:0006366 GO_REF:0000108 IEA GO:0001055 P DNA-directed RNA polymerase III complex subunit Rpc2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03014 rpo41 involved_in GO:0006366 GO_REF:0000108 IEA GO:0001055 P mitochondrial RNA polymerase Rpo41 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03144 nuc1 involved_in GO:0006366 GO_REF:0000108 IEA GO:0001055 P DNA-directed RNA polymerase I complex large subunit Nuc1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03578 rpa2 involved_in GO:0006366 GO_REF:0000108 IEA GO:0001055 P DNA-directed RNA polymerase I complex subunit Rpa2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_04934 rpc1 involved_in GO:0006366 GO_REF:0000108 IEA GO:0001055 P DNA-directed RNA polymerase III complex large subunit Rpc1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_01713 rpb1 involved_in GO:0006383 GO_REF:0000108 IEA GO:0001056 P DNA-directed RNA polymerase II complex large subunit Rpb1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03014 rpo41 involved_in GO:0006383 GO_REF:0000108 IEA GO:0001056 P mitochondrial RNA polymerase Rpo41 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03144 nuc1 involved_in GO:0006383 GO_REF:0000108 IEA GO:0001056 P DNA-directed RNA polymerase I complex large subunit Nuc1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03578 rpa2 involved_in GO:0006383 GO_REF:0000108 IEA GO:0001056 P DNA-directed RNA polymerase I complex subunit Rpa2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_04030 rpb2 involved_in GO:0006383 GO_REF:0000108 IEA GO:0001056 P DNA-directed RNA polymerase II complex subunit Rpb2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_00637 rpc2 involved_in GO:0001059 GO_REF:0000108 IEA GO:0001057 P DNA-directed RNA polymerase III complex subunit Rpc2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_01713 rpb1 involved_in GO:0001059 GO_REF:0000108 IEA GO:0001057 P DNA-directed RNA polymerase II complex large subunit Rpb1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03014 rpo41 involved_in GO:0001059 GO_REF:0000108 IEA GO:0001057 P mitochondrial RNA polymerase Rpo41 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03144 nuc1 involved_in GO:0001059 GO_REF:0000108 IEA GO:0001057 P DNA-directed RNA polymerase I complex large subunit Nuc1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03578 rpa2 involved_in GO:0001059 GO_REF:0000108 IEA GO:0001057 P DNA-directed RNA polymerase I complex subunit Rpa2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_04030 rpb2 involved_in GO:0001059 GO_REF:0000108 IEA GO:0001057 P DNA-directed RNA polymerase II complex subunit Rpb2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_04934 rpc1 involved_in GO:0001059 GO_REF:0000108 IEA GO:0001057 P DNA-directed RNA polymerase III complex large subunit Rpc1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_00637 rpc2 involved_in GO:0001060 GO_REF:0000108 IEA GO:0001058 P DNA-directed RNA polymerase III complex subunit Rpc2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_01713 rpb1 involved_in GO:0001060 GO_REF:0000108 IEA GO:0001058 P DNA-directed RNA polymerase II complex large subunit Rpb1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03014 rpo41 involved_in GO:0001060 GO_REF:0000108 IEA GO:0001058 P mitochondrial RNA polymerase Rpo41 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03144 nuc1 involved_in GO:0001060 GO_REF:0000108 IEA GO:0001058 P DNA-directed RNA polymerase I complex large subunit Nuc1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03578 rpa2 involved_in GO:0001060 GO_REF:0000108 IEA GO:0001058 P DNA-directed RNA polymerase I complex subunit Rpa2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_04030 rpb2 involved_in GO:0001060 GO_REF:0000108 IEA GO:0001058 P DNA-directed RNA polymerase II complex subunit Rpb2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_04934 rpc1 involved_in GO:0001060 GO_REF:0000108 IEA GO:0001058 P DNA-directed RNA polymerase III complex large subunit Rpc1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_00637 rpc2 involved_in GO:0006390 GO_REF:0000108 IEA GO:0001065 P DNA-directed RNA polymerase III complex subunit Rpc2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_01713 rpb1 involved_in GO:0006390 GO_REF:0000108 IEA GO:0001065 P DNA-directed RNA polymerase II complex large subunit Rpb1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03144 nuc1 involved_in GO:0006390 GO_REF:0000108 IEA GO:0001065 P DNA-directed RNA polymerase I complex large subunit Nuc1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03578 rpa2 involved_in GO:0006390 GO_REF:0000108 IEA GO:0001065 P DNA-directed RNA polymerase I complex subunit Rpa2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_04030 rpb2 involved_in GO:0006390 GO_REF:0000108 IEA GO:0001065 P DNA-directed RNA polymerase II complex subunit Rpb2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_04934 rpc1 involved_in GO:0006390 GO_REF:0000108 IEA GO:0001065 P DNA-directed RNA polymerase III complex large subunit Rpc1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_00637 rpc2 involved_in GO:0042793 GO_REF:0000108 IEA GO:0001066 P DNA-directed RNA polymerase III complex subunit Rpc2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_01713 rpb1 involved_in GO:0042793 GO_REF:0000108 IEA GO:0001066 P DNA-directed RNA polymerase II complex large subunit Rpb1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03014 rpo41 involved_in GO:0042793 GO_REF:0000108 IEA GO:0001066 P mitochondrial RNA polymerase Rpo41 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03144 nuc1 involved_in GO:0042793 GO_REF:0000108 IEA GO:0001066 P DNA-directed RNA polymerase I complex large subunit Nuc1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_03578 rpa2 involved_in GO:0042793 GO_REF:0000108 IEA GO:0001066 P DNA-directed RNA polymerase I complex subunit Rpa2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_04030 rpb2 involved_in GO:0042793 GO_REF:0000108 IEA GO:0001066 P DNA-directed RNA polymerase II complex subunit Rpb2 protein taxon:4897 20241218 GOCJaponicusDB SJAG_04934 rpc1 involved_in GO:0042793 GO_REF:0000108 IEA GO:0001066 P DNA-directed RNA polymerase III complex large subunit Rpc1 protein taxon:4897 20241218 GOCJaponicusDB SJAG_00399 cdc23 involved_in GO:0006269 GO_REF:0000108 IEA GO:0003896 P MCM-associated protein Mcm10 protein taxon:4897 20241218 GOCCheck for, and filter, annotations made to retracted publications
GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect
IEAs should be less than one year old.
Obsolete GO_REFs are not allowed
IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference
Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants
Qualifier: IKR evidence code requires a NOT qualifier
Check for valid combination of evidence code and GO_REF
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.
Annotations to ISS, ISA and ISO should not be self-referential
References should have only one ID per ID space
Object extensions should conform to the extensions-patterns.yaml file in metadata
Allowed gene product to term relations (gp2term)
Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)
TreeGrafter IEAs should be filtered for GO reference species
Annotations to term that are candidates for obsoletion should be removed