• Report (original)
• Predictions (original)
• Predictions (experimental) (original)

Group: japonicusdb - Dataset: japonicusdb

SUMMARY

This report generated on 2023-09-20

• Associations: 22278
• Lines in file (incl headers): 29408
• Lines skipped: 7125

Header From Original Association File

!gaf-version: 2.2
!generated-by: JaponicusDB
!date-generated: 2023-09-20T04:11
!URL: https://www.japonicusdb.org
!contact: helpdesk@pombase.org

Contents

gorule-0000002

gorule-0000006

gorule-0000007

gorule-0000008

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

gorule-0000017

gorule-0000018

gorule-0000020

gorule-0000028

gorule-0000029

gorule-0000030

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

gorule-0000050

gorule-0000051

gorule-0000055

gorule-0000057

gorule-0000058

gorule-0000061

other

MESSAGES

gorule-0000002

No 'NOT' annotations to 'protein binding ; GO:0005515'

• total: 0

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

• total: 0

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

• total: 0

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 57

Messages

• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_00068 gwt1 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPAC144.10c P pig-W protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_00125 sdu1 involved_in GO:0016579 GO_REF:0000107 IEA PomBase:SPAPYUG7.06 P PPPDE peptidase family deubiquitinase/desumoylase Sdu1 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_00295 gpi18 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPAC18B11.05 P pig-V, dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_00546 ubp9 involved_in GO:0035871 GO_REF:0000107 IEA PomBase:SPBC1703.12 P ubiquitin C-terminal hydrolase Ubp9 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_00546 ubp9 involved_in GO:0071108 GO_REF:0000107 IEA PomBase:SPBC1703.12 P ubiquitin C-terminal hydrolase Ubp9 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_00573 ubp15 involved_in GO:0035871 GO_REF:0000107 IEA PomBase:SPBC713.02c P ubiquitin C-terminal hydrolase Ubp15 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_00573 ubp15 involved_in GO:0070536 GO_REF:0000107 IEA PomBase:SPBC713.02c P ubiquitin C-terminal hydrolase Ubp15 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_00831 dpm3 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPBC1677.02 P dolichol-phosphate mannosyltransferase subunit 3 protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_01020 bit61 enables GO:0098772 GO_REF:0000107 IEA PomBase:SPCC777.08c F Protor homolog, Bit61 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_01084 srk1 involved_in GO:0032092 GO_REF:0000107 IEA PomBase:SPCC1322.08 P MAPK-activated protein kinase Srk1 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_01150 nro1 involved_in GO:0043388 GO_REF:0000107 IEA PomBase:SPCC4B3.07 P negative regulator of Ofd1, Nro1 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_01227 cwh43 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPAC589.12 P glycosylceramide biosynthesis protein Cwh43 protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_01281 sst2 involved_in GO:0035871 GO_REF:0000107 IEA PomBase:SPAC19B12.10 P human AMSH/STAMBP protein homolog, ubiquitin specific-protease protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_01281 sst2 involved_in GO:0070536 GO_REF:0000107 IEA PomBase:SPAC19B12.10 P human AMSH/STAMBP protein homolog, ubiquitin specific-protease protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_01416 gpi12 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPAPB2B4.01c P pig-L, N-acetylglucosaminylphosphatidyl inositoldeacetylase protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_01858 mnl1 involved_in GO:1904380 GO_REF:0000107 IEA PomBase:SPAC23A1.04c P alpha mannosidase Mnl1 protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_01860 ted1 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPAC23A1.02c P GPI-remodelling mannose-ethanolamine phosphate phosphodiesterase Ted1 protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_01895 emi5 involved_in GO:0018293 GO_REF:0000024 ISS UniProtKB:Q08230 P succinate dehydrogenase complex assembly protein Emi5 protein taxon:4897 20090727 UniProt
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_02106 SJAG_02106 involved_in GO:0036525 GO_REF:0000107 IEA PomBase:SPAC22E12.03c P glyoxylase III Sdj1-like protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_02488 SJAG_02488 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPCC1450.15 P pig-F/3-ketosphinganine reductase fusion protein protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_02523 gpi7 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPAC13G6.03 P CP2 mannose-ethanolamine phosphotransferase GPI anchor biosynthesis protein Gpi7 protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_02724 swi1 involved_in GO:0043388 GO_REF:0000107 IEA PomBase:SPBC216.06c P replication fork protection complex subunit Swi1 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_02804 gpi15 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPBC685.05 P pig-H protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_02903 dpm1 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPAC31G5.16c P dolichyl-phosphate beta-D-mannosyltransferase catalytic subunit Dpm1 protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_02913 mug84 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPAC22A12.13 P pig-P subunit protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03066 gpi1 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPBC30D10.11 P pig-Q protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03067 tor1 involved_in GO:0035562 GO_REF:0000107 IEA PomBase:SPBC30D10.10c P TORC2 serine/threonine protein kinase Tor1 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03088 fim1 involved_in GO:1904530 GO_REF:0000107 IEA PomBase:SPBC1778.06c P fimbrin protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03097 swi3 involved_in GO:0043388 GO_REF:0000107 IEA PomBase:SPBC30D10.04 P replication fork protection complex subunit Swi3 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03115 gpi14 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPBC13E7.05 P pig-M, glycosylphosphatidylinositol-mannosyltransferase I complex subunit pig-M protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03160 hsk1 involved_in GO:0043392 GO_REF:0000107 IEA PomBase:SPBC776.12c P Dbf4(Dfp1)-dependent protein kinase Hsk1 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03199 cyt2 involved_in GO:0018063 GO_REF:0000107 IEA PomBase:SPAC24C9.02c P cytochrome c1 heme lyase Cyt2 protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03280 gls2 involved_in GO:1904380 GO_REF:0000107 IEA PomBase:SPAC1002.03c P glucosidase II alpha subunit Gls2 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03429 ubp4 involved_in GO:0035871 GO_REF:0000107 IEA PomBase:SPBC18H10.08c P ubiquitin C-terminal hydrolase Ubp4 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03429 ubp4 involved_in GO:0071108 GO_REF:0000107 IEA PomBase:SPBC18H10.08c P ubiquitin C-terminal hydrolase Ubp4 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03506 gpi13 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPBC27B12.06 P pig-O protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03535 gbs1 involved_in GO:1904380 GO_REF:0000107 IEA PomBase:SPCC825.02 P glucosidase II beta subunit protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03686 ubp5 involved_in GO:0035871 GO_REF:0000107 IEA PomBase:SPCC188.08c P ubiquitin C-terminal hydrolase Ubp5 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03686 ubp5 involved_in GO:0070536 GO_REF:0000107 IEA PomBase:SPCC188.08c P ubiquitin C-terminal hydrolase Ubp5 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03695 dfp1 involved_in GO:0043392 GO_REF:0000107 IEA PomBase:SPCC550.13 P Hsk1-Dfp1 kinase complex regulatory subunit Dfp1 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03801 pbn1 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPCC1919.02 P pig-X, glycosylphosphatidylinositol-mannosyltransferase I complex subunit protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_03878 smp3 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPAC4G8.12c P pig-Z, alpha-1,2-mannosyltransferase Smp3 protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_04008 cyc3 involved_in GO:0018063 GO_REF:0000107 IEA PomBase:SPBC26H8.12 P cytochrome c heme lyase Cyc3 protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_04119 gpi2 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPCC550.04c P pig-C protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_04165 its8 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPBC839.08c P pig-N protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_04337 gup1 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPAC24H6.01c P membrane bound O-acyltransferase, MBOAT Gup1 protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_04404 SJAG_04404 involved_in GO:0036525 GO_REF:0000107 IEA PomBase:SPAC22E12.03c P glyoxylase III Sdj1-like protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_04881 gpi3 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPBC3D6.07 P pig-A, phosphatidylinositol N-acetylglucosaminyltransferase subunit Gpi3 protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_04887 cdc8 involved_in GO:1904530 GO_REF:0000107 IEA PomBase:SPAC27F1.02c P tropomyosin protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_04887 cdc8 enables GO:0098772 GO_REF:0000107 IEA PomBase:SPAC27F1.02c F tropomyosin protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_04924 SJAG_04924 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPAC630.12 P GPI-remodelling mannose-ethanolamine phosphate phosphodiesterase protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_04975 pga3 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPAC823.07 P GPI-phospholipase A2 activity regulator Pga3 protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_05030 ryh1 enables GO:0098772 GO_REF:0000107 IEA PomBase:SPAC4C5.02c F Rab family GTPase Ryh1 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_05219 dpm2 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPBC21B10.11 P dolichol-phosphate mannosyltransferase regulatory subunit Dpm2 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_05327 gpi10 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPCC16A11.06c P pig-B protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_06383 SJAG_06383 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPAC227.19c P pig-Y, phosphatidylinositol N-acetylglucosaminyltransferase subunit Eri1 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- JaponicusDB SJAG_06425 pga1 involved_in GO:0006506 GO_REF:0000107 IEA PomBase:SPAC167.09 P GPI-mannosyltransferase II complex subunit Pga1 protein taxon:4897 20230920 GO_Central

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

• total: 0

gorule-0000013

Taxon-appropriate annotation check

• total: 12

Messages

• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_00514 scd1 involved_in GO:1902917 GO_REF:0000107 IEA PomBase:SPAC16E8.09 P RhoGEF Scd1 protein taxon:4897 20230920 PomBase
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_01739 SJAG_01739 is_active_in GO:0030017 GO_REF:0000044 IEA UniProtKB-SubCell:SL-0313 C dynactin complex subunit 4 protein taxon:4897 20230703 UniProt
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_01794 scd2 involved_in GO:1902917 GO_REF:0000107 IEA PomBase:SPAC22H10.07 P Cdc42 GTPase complex scaffold subunit Scd2 protein taxon:4897 20230920 PomBase
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_01894 acp1 involved_in GO:1904600 GO_REF:0000107 IEA PomBase:SPAC12B10.07 P F-actin capping protein alpha subunit protein taxon:4897 20230920 PomBase
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_01943 fus1 involved_in GO:1904600 GO_REF:0000107 IEA PomBase:SPAC20G4.02c P formin Fus1 protein taxon:4897 20230920 PomBase
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_01993 twf1 involved_in GO:1904600 GO_REF:0000107 IEA PomBase:SPCC126.06 P twinfilin protein taxon:4897 20230920 PomBase
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_02379 gap1 involved_in GO:1902917 GO_REF:0000107 IEA PomBase:SPBC646.12c P RasGAP Gap1 protein taxon:4897 20230920 PomBase
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_02700 acp2 involved_in GO:1904600 GO_REF:0000107 IEA PomBase:SPAC631.01c P F-actin capping protein beta subunit Acp2 protein taxon:4897 20230920 PomBase
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_02864 rng8 involved_in GO:1904600 GO_REF:0000107 IEA PomBase:SPAC4H3.14c P contractile ring myosin V regulator Rng8 protein taxon:4897 20230920 PomBase
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_02989 slm1 involved_in GO:1904600 GO_REF:0000107 IEA PomBase:SPAC637.13c P cytoskeletal signaling protein Slm1 protein taxon:4897 20230920 PomBase
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_03453 ras1 involved_in GO:1902917 GO_REF:0000107 IEA PomBase:SPAC17H9.09c P GTPase Ras1 protein taxon:4897 20230920 PomBase
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_04509 cdc42 involved_in GO:1902917 GO_REF:0000107 IEA PomBase:SPAC110.03 P Rho family GTPase Cdc42 protein taxon:4897 20230920 PomBase

gorule-0000015

Dual species taxon check

• total: 0

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 0

gorule-0000017

IDA annotations must not have a With/From entry

• total: 0

gorule-0000018

IPI annotations require a With/From entry

• total: 0

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 1

Messages

• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0047780) -- JaponicusDB SJAG_03588 aco1 enables GO:0047780 GO_REF:0000107 IEA PomBase:SPAC24C9.06c F aconitate hydratase Aco1 protein taxon:4897 20230920 UniProt

gorule-0000028

Aspect can only be one of C, P, F and should be repaired using the GO term

• total: 0

gorule-0000029

IEAs should be less than one year old.

• total: 0

gorule-0000030

Deprecated GO_REFs are not allowed

• total: 0

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

• total: 0

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

• total: 0

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

• total: 0

gorule-0000043

Check for valid combination of evidence code and GO_REF

• total: 0

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

• total: 0

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

• total: 0

gorule-0000051

Some GO terms require a value in the Annotation Extension field

• total: 2

Messages

• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- JaponicusDB SJAG_03287 bqt2 enables GO:0005515 PMID:23337086 IPI JaponicusDB:SJAG_05260 F bouquet formation protein Bqt2 protein taxon:4897 20210511 JaponicusDB
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- JaponicusDB SJAG_05260 bqt1 enables GO:0005515 PMID:23337086 IPI JaponicusDB:SJAG_03287 F bouquet formation protein Bqt1 protein taxon:4897 20210511 JaponicusDB

gorule-0000055

References should have only one ID per ID space

• total: 0

gorule-0000057

Group specific filter rules should be applied to annotations

• total: 0

gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

• total: 0

gorule-0000061

Allowed gene product to term relations (gp2term)

• total: 7

Messages

• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325 -- JaponicusDB SJAG_00662 tif308 part_of GO:0042788 GO_REF:0000107 IEA PomBase:SPAC821.05 C translation initiation factor eIF3h (p40) protein taxon:4897 20230920 GO_Central
• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325 -- JaponicusDB SJAG_01641 egd2 part_of GO:0042788 GO_REF:0000107 IEA PomBase:SPBC25H2.05 C nascent polypeptide-associated complex alpha subunit Egd2 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325 -- JaponicusDB SJAG_03603 nhp6 part_of GO:0030875 PMID:24184107 EXP C HMG-box non-histone chromatin protein protein taxon:4897 20210705 JaponicusDB
• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325 -- JaponicusDB SJAG_03923 dbl8 part_of GO:0030874 GO_REF:0000107 IEA PomBase:SPBC29A10.10c C ATP-dependent RNA helicase Dbl8 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325 -- JaponicusDB SJAG_04210 mcm4 part_of GO:0030875 GO_REF:0000107 IEA PomBase:SPCC16A11.17 C MCM complex subunit Mcm4/Cdc21 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325 -- JaponicusDB SJAG_05180 slx4 part_of GO:0030875 GO_REF:0000107 IEA PomBase:SPAC688.06c C structure-specific endonuclease subunit Slx4 protein taxon:4897 20230920 PomBase
• WARNING - Violates GO Rule: GORULE:0000061: Found violation of: Only certain gene product to term relations are allowed for a given GO term but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325 -- JaponicusDB SJAG_05237 slx1 part_of GO:0030875 GO_REF:0000107 IEA PomBase:SPAP27G11.15 C structure-specific endonuclease catalytic subunit Slx1 protein taxon:4897 20230920 PomBase

other

• total: 0

GO:0009785 blue light signaling pathway AnnotationPropagation P GO:0009882 blue light photoreceptor activity IMP
GO:0008654 phospholipid biosynthetic process FoldBasedPredictor GO:0004605 phosphatidate cytidylyltransferase activity part_of GO:0008654 phospholipid biosynthetic process EXP