• Report (original)
• Predictions (original)
• Predictions (experimental) (original)

Group: japonicusdb - Dataset: japonicusdb

SUMMARY

This report generated on 2025-02-02

• Associations: 3751
• Lines in file (incl headers): 12215
• Lines skipped: 8459

Header From Original Association File

!gaf-version: 2.2
!generated-by: JaponicusDB
!date-generated: 2025-02-02T05:01
!URL: https://www.japonicusdb.org
!contact: helpdesk@pombase.org

Contents

gorule-0000002

gorule-0000005

gorule-0000006

gorule-0000007

gorule-0000008

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

gorule-0000017

gorule-0000018

gorule-0000020

gorule-0000022

gorule-0000028

gorule-0000029

gorule-0000030

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

gorule-0000050

gorule-0000055

gorule-0000058

gorule-0000061

gorule-0000063

gorule-0000064

gorule-0000065

other

MESSAGES

gorule-0000002

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

• total: 0

gorule-0000005

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

• total: 0

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

• total: 0

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

• total: 0

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 0

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

• total: 0

gorule-0000013

Taxon-appropriate annotation check

• total: 12

Messages

• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_00309 adi1 involved_in GO:0019509 GO_REF:0000041 IEA UniPathway:UPA00904 P acireductone dioxygenase family Adi1 protein taxon:4897 20240129 UniProt
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_00518 aro7 involved_in GO:0009094 GO_REF:0000043 IEA UniProtKB-KW:KW-0584 P chorismate mutase Aro7 protein taxon:4897 20241216 UniProt
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_00869 lys1 involved_in GO:0019878 GO_REF:0000041 IEA UniPathway:UPA00033 P aminoadipate-semialdehyde dehydrogenase protein taxon:4897 20240129 UniProt
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_01574 lys2 involved_in GO:0019878 GO_REF:0000041 IEA UniPathway:UPA00033 P homoaconitate hydratase Lys2 protein taxon:4897 20240129 UniProt
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_02400 his7 involved_in GO:0000105 GO_REF:0000041 IEA UniPathway:UPA00031 P phosphoribosyl-AMP cyclohydrolase/phosphoribosyl- ATP pyrophosphohydrolase His7 protein taxon:4897 20240129 UniProt
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_02972 met17 involved_in GO:0071266 GO_REF:0000108 IEA GO:0003961 P homocysteine synthase Met17 protein taxon:4897 20241218 GOC
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_03055 his3 involved_in GO:0000105 GO_REF:0000002 IEA InterPro:IPR005861 P histidinol-phosphate transaminase His3 protein taxon:4897 20241216 InterPro
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_03243 leu2 involved_in GO:0009098 GO_REF:0000041 IEA UniPathway:UPA00048 P 3-isopropylmalate dehydratase Leu2 protein taxon:4897 20240129 UniProt
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_03671 cbl1 involved_in GO:0071266 GO_REF:0000002 IEA InterPro:IPR006238 P cystathionine beta-lyase Cbl1 protein taxon:4897 20241216 InterPro
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_03775 his4 involved_in GO:0000105 GO_REF:0000041 IEA UniPathway:UPA00031 P imidazoleglycerol-phosphate synthase His4 protein taxon:4897 20240129 UniProt
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_04098 ilv3 involved_in GO:0009099 GO_REF:0000041 IEA UniPathway:UPA00049 P dihydroxy-acid dehydratase Ilv3 protein taxon:4897 20240129 UniProt
• ERROR - Violates GO Rule: GORULE:0000013: Taxon-appropriate annotation check -- JaponicusDB SJAG_06635 ilv6 involved_in GO:0009099 GO_REF:0000041 IEA UniPathway:UPA00049 P acetolactate synthase regulatory subunit Ilv6 protein taxon:4897 20240129 UniProt

gorule-0000015

Dual species taxon check

• total: 0

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 0

gorule-0000017

IDA annotations must not have a With/From entry

• total: 0

gorule-0000018

IPI annotations require a With/From entry

• total: 0

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 43

Messages

• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001054) -- JaponicusDB SJAG_00637 rpc2 involved_in GO:0006360 GO_REF:0000108 IEA GO:0001054 P DNA-directed RNA polymerase III complex subunit Rpc2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001054) -- JaponicusDB SJAG_01713 rpb1 involved_in GO:0006360 GO_REF:0000108 IEA GO:0001054 P DNA-directed RNA polymerase II complex large subunit Rpb1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001054) -- JaponicusDB SJAG_03014 rpo41 involved_in GO:0006360 GO_REF:0000108 IEA GO:0001054 P mitochondrial RNA polymerase Rpo41 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001054) -- JaponicusDB SJAG_04030 rpb2 involved_in GO:0006360 GO_REF:0000108 IEA GO:0001054 P DNA-directed RNA polymerase II complex subunit Rpb2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001054) -- JaponicusDB SJAG_04934 rpc1 involved_in GO:0006360 GO_REF:0000108 IEA GO:0001054 P DNA-directed RNA polymerase III complex large subunit Rpc1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001055) -- JaponicusDB SJAG_00637 rpc2 involved_in GO:0006366 GO_REF:0000108 IEA GO:0001055 P DNA-directed RNA polymerase III complex subunit Rpc2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001055) -- JaponicusDB SJAG_03014 rpo41 involved_in GO:0006366 GO_REF:0000108 IEA GO:0001055 P mitochondrial RNA polymerase Rpo41 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001055) -- JaponicusDB SJAG_03144 nuc1 involved_in GO:0006366 GO_REF:0000108 IEA GO:0001055 P DNA-directed RNA polymerase I complex large subunit Nuc1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001055) -- JaponicusDB SJAG_03578 rpa2 involved_in GO:0006366 GO_REF:0000108 IEA GO:0001055 P DNA-directed RNA polymerase I complex subunit Rpa2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001055) -- JaponicusDB SJAG_04934 rpc1 involved_in GO:0006366 GO_REF:0000108 IEA GO:0001055 P DNA-directed RNA polymerase III complex large subunit Rpc1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001056) -- JaponicusDB SJAG_01713 rpb1 involved_in GO:0006383 GO_REF:0000108 IEA GO:0001056 P DNA-directed RNA polymerase II complex large subunit Rpb1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001056) -- JaponicusDB SJAG_03014 rpo41 involved_in GO:0006383 GO_REF:0000108 IEA GO:0001056 P mitochondrial RNA polymerase Rpo41 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001056) -- JaponicusDB SJAG_03144 nuc1 involved_in GO:0006383 GO_REF:0000108 IEA GO:0001056 P DNA-directed RNA polymerase I complex large subunit Nuc1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001056) -- JaponicusDB SJAG_03578 rpa2 involved_in GO:0006383 GO_REF:0000108 IEA GO:0001056 P DNA-directed RNA polymerase I complex subunit Rpa2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001056) -- JaponicusDB SJAG_04030 rpb2 involved_in GO:0006383 GO_REF:0000108 IEA GO:0001056 P DNA-directed RNA polymerase II complex subunit Rpb2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001057) -- JaponicusDB SJAG_00637 rpc2 involved_in GO:0001059 GO_REF:0000108 IEA GO:0001057 P DNA-directed RNA polymerase III complex subunit Rpc2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001057) -- JaponicusDB SJAG_01713 rpb1 involved_in GO:0001059 GO_REF:0000108 IEA GO:0001057 P DNA-directed RNA polymerase II complex large subunit Rpb1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001057) -- JaponicusDB SJAG_03014 rpo41 involved_in GO:0001059 GO_REF:0000108 IEA GO:0001057 P mitochondrial RNA polymerase Rpo41 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001057) -- JaponicusDB SJAG_03144 nuc1 involved_in GO:0001059 GO_REF:0000108 IEA GO:0001057 P DNA-directed RNA polymerase I complex large subunit Nuc1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001057) -- JaponicusDB SJAG_03578 rpa2 involved_in GO:0001059 GO_REF:0000108 IEA GO:0001057 P DNA-directed RNA polymerase I complex subunit Rpa2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001057) -- JaponicusDB SJAG_04030 rpb2 involved_in GO:0001059 GO_REF:0000108 IEA GO:0001057 P DNA-directed RNA polymerase II complex subunit Rpb2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001057) -- JaponicusDB SJAG_04934 rpc1 involved_in GO:0001059 GO_REF:0000108 IEA GO:0001057 P DNA-directed RNA polymerase III complex large subunit Rpc1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001058) -- JaponicusDB SJAG_00637 rpc2 involved_in GO:0001060 GO_REF:0000108 IEA GO:0001058 P DNA-directed RNA polymerase III complex subunit Rpc2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001058) -- JaponicusDB SJAG_01713 rpb1 involved_in GO:0001060 GO_REF:0000108 IEA GO:0001058 P DNA-directed RNA polymerase II complex large subunit Rpb1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001058) -- JaponicusDB SJAG_03014 rpo41 involved_in GO:0001060 GO_REF:0000108 IEA GO:0001058 P mitochondrial RNA polymerase Rpo41 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001058) -- JaponicusDB SJAG_03144 nuc1 involved_in GO:0001060 GO_REF:0000108 IEA GO:0001058 P DNA-directed RNA polymerase I complex large subunit Nuc1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001058) -- JaponicusDB SJAG_03578 rpa2 involved_in GO:0001060 GO_REF:0000108 IEA GO:0001058 P DNA-directed RNA polymerase I complex subunit Rpa2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001058) -- JaponicusDB SJAG_04030 rpb2 involved_in GO:0001060 GO_REF:0000108 IEA GO:0001058 P DNA-directed RNA polymerase II complex subunit Rpb2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001058) -- JaponicusDB SJAG_04934 rpc1 involved_in GO:0001060 GO_REF:0000108 IEA GO:0001058 P DNA-directed RNA polymerase III complex large subunit Rpc1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001065) -- JaponicusDB SJAG_00637 rpc2 involved_in GO:0006390 GO_REF:0000108 IEA GO:0001065 P DNA-directed RNA polymerase III complex subunit Rpc2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001065) -- JaponicusDB SJAG_01713 rpb1 involved_in GO:0006390 GO_REF:0000108 IEA GO:0001065 P DNA-directed RNA polymerase II complex large subunit Rpb1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001065) -- JaponicusDB SJAG_03144 nuc1 involved_in GO:0006390 GO_REF:0000108 IEA GO:0001065 P DNA-directed RNA polymerase I complex large subunit Nuc1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001065) -- JaponicusDB SJAG_03578 rpa2 involved_in GO:0006390 GO_REF:0000108 IEA GO:0001065 P DNA-directed RNA polymerase I complex subunit Rpa2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001065) -- JaponicusDB SJAG_04030 rpb2 involved_in GO:0006390 GO_REF:0000108 IEA GO:0001065 P DNA-directed RNA polymerase II complex subunit Rpb2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001065) -- JaponicusDB SJAG_04934 rpc1 involved_in GO:0006390 GO_REF:0000108 IEA GO:0001065 P DNA-directed RNA polymerase III complex large subunit Rpc1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001066) -- JaponicusDB SJAG_00637 rpc2 involved_in GO:0042793 GO_REF:0000108 IEA GO:0001066 P DNA-directed RNA polymerase III complex subunit Rpc2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001066) -- JaponicusDB SJAG_01713 rpb1 involved_in GO:0042793 GO_REF:0000108 IEA GO:0001066 P DNA-directed RNA polymerase II complex large subunit Rpb1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001066) -- JaponicusDB SJAG_03014 rpo41 involved_in GO:0042793 GO_REF:0000108 IEA GO:0001066 P mitochondrial RNA polymerase Rpo41 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001066) -- JaponicusDB SJAG_03144 nuc1 involved_in GO:0042793 GO_REF:0000108 IEA GO:0001066 P DNA-directed RNA polymerase I complex large subunit Nuc1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001066) -- JaponicusDB SJAG_03578 rpa2 involved_in GO:0042793 GO_REF:0000108 IEA GO:0001066 P DNA-directed RNA polymerase I complex subunit Rpa2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001066) -- JaponicusDB SJAG_04030 rpb2 involved_in GO:0042793 GO_REF:0000108 IEA GO:0001066 P DNA-directed RNA polymerase II complex subunit Rpb2 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0001066) -- JaponicusDB SJAG_04934 rpc1 involved_in GO:0042793 GO_REF:0000108 IEA GO:0001066 P DNA-directed RNA polymerase III complex large subunit Rpc1 protein taxon:4897 20241218 GOC
• WARNING - Obsolete class: Violates GORULE:0000020, but was repaired (GO:0003896) -- JaponicusDB SJAG_00399 cdc23 involved_in GO:0006269 GO_REF:0000108 IEA GO:0003896 P MCM-associated protein Mcm10 protein taxon:4897 20241218 GOC

gorule-0000022

Check for, and filter, annotations made to retracted publications

• total: 0

gorule-0000028

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

• total: 0

gorule-0000029

IEAs should be less than one year old.

• total: 76

Messages

• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_00097 SJAG_00097 involved_in GO:0006782 GO_REF:0000041 IEA UniPathway:UPA00251 P aminotransferase, class I/classII protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_00197 ura3 involved_in GO:0044205 GO_REF:0000041 IEA UniPathway:UPA00070 P mitochondrial dihydroorotate dehydrogenase Ura3 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_00251 dph4 involved_in GO:0017183 GO_REF:0000041 IEA UniPathway:UPA00559 P diphthamide biosynthesis protein Dph4 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_00260 sdh2 involved_in GO:0006099 GO_REF:0000041 IEA UniPathway:UPA00223 P succinate dehydrogenase (ubiquinone) iron-sulfur protein subunit protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_00309 adi1 involved_in GO:0019509 GO_REF:0000041 IEA UniPathway:UPA00904 P acireductone dioxygenase family Adi1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_00381 thi4 involved_in GO:0009229 GO_REF:0000041 IEA UniPathway:UPA00060 P bifunctional thiamine-phosphate dipyrophosphorylase/hydroxyethylthiazole kinase protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_00444 ura2 involved_in GO:0044205 GO_REF:0000041 IEA UniPathway:UPA00070 P dihydroorotase Ura2 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_00495 car2 involved_in GO:0055129 GO_REF:0000041 IEA UniPathway:UPA00098 P ornithine transaminase Car2 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_00519 mpo1 involved_in GO:0006048 GO_REF:0000041 IEA UniPathway:UPA00113 P ER membrane fatty acid alpha-oxygenase Mpo1/glucosamine-phosphate N-acetyltransferase Gna1, tandem fusion protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_00529 fol3 involved_in GO:0046901 GO_REF:0000041 IEA UniPathway:UPA00850 P folylpolyglutamate synthase Fol3 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_00660 pro1 involved_in GO:0055129 GO_REF:0000041 IEA UniPathway:UPA00098 P gamma-glutamyl phosphate reductase Pro1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_00694 ura5 involved_in GO:0044205 GO_REF:0000041 IEA UniPathway:UPA00070 P orotate phosphoribosyltransferase Ura5 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_00721 coq4 involved_in GO:0006744 GO_REF:0000041 IEA UniPathway:UPA00232 P ubiquinone biosynthesis protein Coq4 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_00831 dpm3 involved_in GO:0006486 GO_REF:0000041 IEA UniPathway:UPA00378 P dolichol-phosphate mannosyltransferase subunit 3 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_00869 lys1 involved_in GO:0019878 GO_REF:0000041 IEA UniPathway:UPA00033 P aminoadipate-semialdehyde dehydrogenase protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_00964 ura1 involved_in GO:0044205 GO_REF:0000041 IEA UniPathway:UPA00070 P trifunctional GLNase (glutamine amidotransferase)/CPSase (carbamoylphosphate synthetase)/ATCase (aspartate transcarbamoylase) Ura1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_01019 arg1 involved_in GO:0006526 GO_REF:0000041 IEA UniPathway:UPA00068 P acetylornithine aminotransferase protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_01070 ado1 involved_in GO:0044209 GO_REF:0000041 IEA UniPathway:UPA00588 P adenosine kinase protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_01081 ade6 involved_in GO:0006189 GO_REF:0000041 IEA UniPathway:UPA00074 P phosphoribosylaminoimidazole carboxylase Ade6 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_01233 pps1 involved_in GO:0006646 GO_REF:0000041 IEA UniPathway:UPA00558 P CDP-diacylglycerol-serine O-phosphatidyltransferase Pps1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_01351 gsa1 involved_in GO:0006750 GO_REF:0000041 IEA UniPathway:UPA00142 P glutathione synthetase large and small subunit Gsa1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_01372 hem2 involved_in GO:0006782 GO_REF:0000041 IEA UniPathway:UPA00251 P porphobilinogen synthase Hem2 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_01416 gpi12 involved_in GO:0006506 GO_REF:0000041 IEA UniPathway:UPA00196 P pig-L, N-acetylglucosaminylphosphatidyl inositoldeacetylase protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_01418 dph3 involved_in GO:0017183 GO_REF:0000041 IEA UniPathway:UPA00559 P diphthamide biosynthesis protein Dph3 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_01461 arg41 involved_in GO:0006526 GO_REF:0000041 IEA UniPathway:UPA00068 P argininosuccinate lyase protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_01574 lys2 involved_in GO:0019878 GO_REF:0000041 IEA UniPathway:UPA00033 P homoaconitate hydratase Lys2 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_01592 aga1 involved_in GO:0006526 GO_REF:0000041 IEA UniPathway:UPA00068 P acetyl-CoA:L-glutamate N-acetyltransferase protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_01661 ade4 involved_in GO:0006189 GO_REF:0000041 IEA UniPathway:UPA00074 P amidophosphoribosyltransferase Ade4 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_01671 sdh1 involved_in GO:0006099 GO_REF:0000041 IEA UniPathway:UPA00223 P succinate dehydrogenase Sdh1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_01766 shm1 involved_in GO:0035999 GO_REF:0000041 IEA UniPathway:UPA00193 P serine hydroxymethyltransferase Shm1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_01784 uge1 involved_in GO:0006012 GO_REF:0000041 IEA UniPathway:UPA00214 P UDP-glucose 4-epimerase Uge1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_01997 gud1 involved_in GO:0006147 GO_REF:0000041 IEA UniPathway:UPA00603 P guanine deaminase Gud1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_02400 his7 involved_in GO:0000105 GO_REF:0000041 IEA UniPathway:UPA00031 P phosphoribosyl-AMP cyclohydrolase/phosphoribosyl- ATP pyrophosphohydrolase His7 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_02408 abz1 involved_in GO:0046654 GO_REF:0000041 IEA UniPathway:UPA00077 P para-aminobenzoate synthase protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_02467 dph5 involved_in GO:0017183 GO_REF:0000041 IEA UniPathway:UPA00559 P diphthine synthase Dph5 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_02488 SJAG_02488 involved_in GO:0006506 GO_REF:0000041 IEA UniPathway:UPA00196 P pig-F/3-ketosphinganine reductase fusion protein protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_02766 ure2 involved_in GO:0043419 GO_REF:0000041 IEA UniPathway:UPA00258 P nickel-dependent urease Ure2 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_02776 gab1 involved_in GO:0006506 GO_REF:0000041 IEA UniPathway:UPA00196 P Pig-U, Gab1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_02783 pmm1 involved_in GO:0009298 GO_REF:0000041 IEA UniPathway:UPA00126 P phosphomannomutase Pmm1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_02804 gpi15 involved_in GO:0006506 GO_REF:0000041 IEA UniPathway:UPA00196 P pig-H protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_02850 ade8 involved_in GO:0006189 GO_REF:0000041 IEA UniPathway:UPA00074 P adenylosuccinate lyase Ade8 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_02876 hem14 involved_in GO:0006782 GO_REF:0000041 IEA UniPathway:UPA00251 P protoporphyrinogen oxidase Hem14 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_02896 hem3 involved_in GO:0006782 GO_REF:0000041 IEA UniPathway:UPA00251 P hydroxymethylbilane synthase Hem3 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_02902 psd3 involved_in GO:0006646 GO_REF:0000041 IEA UniPathway:UPA00558 P phosphatidylserine decarboxylase Psd3 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_02903 dpm1 involved_in GO:0006486 GO_REF:0000041 IEA UniPathway:UPA00378 P dolichyl-phosphate beta-D-mannosyltransferase catalytic subunit Dpm1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_02954 gal7 involved_in GO:0006012 GO_REF:0000041 IEA UniPathway:UPA00214 P galactose-1-phosphate uridylyltransferase Gal7 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_03140 ade1 involved_in GO:0006189 GO_REF:0000041 IEA UniPathway:UPA00074 P phosphoribosylamine-glycine ligase/phosphoribosylformylglycinamidine cyclo-ligase protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_03164 ura4 involved_in GO:0044205 GO_REF:0000041 IEA UniPathway:UPA00070 P orotidine 5'-phosphate decarboxylase Ura4 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_03174 rbk1 involved_in GO:0019303 GO_REF:0000041 IEA UniPathway:UPA00916 P ribokinase Rbk1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_03243 leu2 involved_in GO:0009098 GO_REF:0000041 IEA UniPathway:UPA00048 P 3-isopropylmalate dehydratase Leu2 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_03313 cut6 involved_in GO:2001295 GO_REF:0000041 IEA UniPathway:UPA00655 P acetyl-CoA/biotin carboxylase protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_03355 ade3 involved_in GO:0006189 GO_REF:0000041 IEA UniPathway:UPA00074 P phosphoribosylformylglycinamidine synthase Ade3 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_03398 SJAG_03398 involved_in GO:0000050 GO_REF:0000041 IEA UniPathway:UPA00158 P arginase (predicted) protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_03672 gpi8 involved_in GO:0006506 GO_REF:0000041 IEA UniPathway:UPA00196 P pig-K protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_03708 urk1 involved_in GO:0044211 GO_REF:0000041 IEA UniPathway:UPA00579 P uridine kinase/uracil phosphoribosyltransferase protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_03708 urk1 involved_in GO:0044206 GO_REF:0000041 IEA UniPathway:UPA00574 P uridine kinase/uracil phosphoribosyltransferase protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_03739 SJAG_03739 involved_in GO:0006021 GO_REF:0000041 IEA UniPathway:UPA00823 P inositol monophosphatase-like protein protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_03775 his4 involved_in GO:0000105 GO_REF:0000041 IEA UniPathway:UPA00031 P imidazoleglycerol-phosphate synthase His4 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_03801 pbn1 involved_in GO:0006506 GO_REF:0000041 IEA UniPathway:UPA00196 P pig-X, glycosylphosphatidylinositol-mannosyltransferase I complex subunit pig-X protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_03914 shm2 involved_in GO:0035999 GO_REF:0000041 IEA UniPathway:UPA00193 P serine hydroxymethyltransferase Shm2 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_03961 hem1 involved_in GO:0006782 GO_REF:0000041 IEA UniPathway:UPA00251 P 5-aminolevulinate synthase Hem1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_04054 glt1 involved_in GO:0097054 GO_REF:0000041 IEA UniPathway:UPA00634 P glutamate synthase (GOGAT) Glt1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_04098 ilv3 involved_in GO:0009099 GO_REF:0000041 IEA UniPathway:UPA00049 P dihydroxy-acid dehydratase Ilv3 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_04109 hem12 involved_in GO:0006782 GO_REF:0000041 IEA UniPathway:UPA00251 P uroporphyrinogen decarboxylase Hem12 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_04119 gpi2 involved_in GO:0006506 GO_REF:0000041 IEA UniPathway:UPA00196 P pig-C protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_04123 ada1 involved_in GO:0032264 GO_REF:0000041 IEA UniPathway:UPA00591 P adenosine deaminase Ada1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_04145 alt1 involved_in GO:0042853 GO_REF:0000041 IEA UniPathway:UPA00528 P alanine aminotransferase Alt1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_04307 idi1 involved_in GO:0050992 GO_REF:0000041 IEA UniPathway:UPA00059 P isopentenyl-diphosphate delta-isomerase Idi1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_04627 hal3 involved_in GO:0006235 GO_REF:0000041 IEA UniPathway:UPA00575 P thymidylate synthase / phosphopantothenoylcysteine decarboxylase / protein phosphatase inhibitor moonlighting protein Hal3/Tds1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_04728 gfa1 involved_in GO:0006048 GO_REF:0000041 IEA UniPathway:UPA00113 P glutamine-fructose-6-phosphate transaminase Gfa1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_04866 nmt1 involved_in GO:0009229 GO_REF:0000041 IEA UniPathway:UPA00060 P 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase Nmt1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_05024 cts1 involved_in GO:0044210 GO_REF:0000041 IEA UniPathway:UPA00159 P CTP synthase Cts1 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_05219 dpm2 involved_in GO:0006486 GO_REF:0000041 IEA UniPathway:UPA00378 P dolichol-phosphate mannosyltransferase regulatory subunit Dpm2 protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_05278 gpi17 involved_in GO:0006506 GO_REF:0000041 IEA UniPathway:UPA00196 P pig-S protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_05283 hem4 involved_in GO:0006782 GO_REF:0000041 IEA UniPathway:UPA00251 P uroporphyrinogen-III synthase Ups protein taxon:4897 20240129 UniProt
• WARNING - Violates GO Rule: GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed -- JaponicusDB SJAG_06635 ilv6 involved_in GO:0009099 GO_REF:0000041 IEA UniPathway:UPA00049 P acetolactate synthase regulatory subunit Ilv6 protein taxon:4897 20240129 UniProt

gorule-0000030

Obsolete GO_REFs are not allowed

• total: 0

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference

• total: 0

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

• total: 0

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

• total: 0

gorule-0000043

Check for valid combination of evidence code and GO_REF

• total: 0

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

• total: 0

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

• total: 0

gorule-0000055

References should have only one ID per ID space

• total: 0

gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

• total: 0

gorule-0000061

Allowed gene product to term relations (gp2term)

• total: 0

gorule-0000063

Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

• total: 0

gorule-0000064

TreeGrafter IEAs should be filtered for GO reference species

• total: 0

gorule-0000065

Annotations to term that are candidates for obsoletion should be removed

• total: 0

other

• total: 0

GO:0009785 blue light signaling pathway AnnotationPropagation P GO:0009882 blue light photoreceptor activity IMP
GO:0006744 ubiquinone biosynthetic process FoldBasedPredictor GO:0097269 all-trans-decaprenyl-diphosphate synthase activity part_of GO:0006744 ubiquinone biosynthetic process EXP
GO:0006743 ubiquinone metabolic process FoldBasedPredictor GO:0097269 all-trans-decaprenyl-diphosphate synthase activity part_of GO:0006743 ubiquinone metabolic process EXP
GO:0008654 phospholipid biosynthetic process FoldBasedPredictor GO:0004605 phosphatidate cytidylyltransferase activity part_of GO:0008654 phospholipid biosynthetic process EXP