• Report (original)
• Predictions (original)
• Predictions (experimental) (original)

Group: goa - Dataset: goa_pig_rna

SUMMARY

This report generated on 2023-11-06

• Associations: 22408
• Lines in file (incl headers): 22419
• Lines skipped: 2

Header From Original Association File

!gaf-version: 2.2
!
!Note that the annotation set in this file is filtered in order to reduce redundancy; the full, unfiltered set can be found in
!ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gaf.gz
!
!date-generated: 2023-09-21 09:57
!generated-by: UniProt
!go-version: http://purl.obolibrary.org/obo/go/releases/2023-09-10/extensions/go-plus.owl
!

Contents

gorule-0000002

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gorule-0000008

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

gorule-0000017

gorule-0000018

gorule-0000028

gorule-0000029

gorule-0000030

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

gorule-0000050

gorule-0000051

gorule-0000055

gorule-0000057

gorule-0000058

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other

MESSAGES

gorule-0000002

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

• total: 0

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

• total: 0

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

• total: 0

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 0

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

• total: 2

Messages

• ERROR - Violates GO Rule: GORULE:0000011: ND annotations to root nodes only -- RNAcentral URS00002A801B_9823 URS00002A801B_9823 enables GO:0003674 GO_REF:0000115 IEA Rfam:RF00670 F Sus scrofa (pig) microRNA ssc-mir-105 precursor (ssc-mir-105-1) pre_miRNA taxon:9823 20230911 RNAcentral
• ERROR - Violates GO Rule: GORULE:0000011: ND annotations to root nodes only -- RNAcentral URS00006E735F_9823 URS00006E735F_9823 enables GO:0003674 GO_REF:0000115 IEA Rfam:RF00670 F Sus scrofa (pig) microRNA ssc-mir-105 precursor (ssc-mir-105-2) pre_miRNA taxon:9823 20230911 RNAcentral

gorule-0000013

Taxon-appropriate annotation check

• total: 0

gorule-0000015

Dual species taxon check

• total: 0

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 0

gorule-0000017

IDA annotations must not have a With/From entry

• total: 0

gorule-0000018

IPI annotations require a With/From entry

• total: 0

gorule-0000028

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

• total: 0

gorule-0000029

IEAs should be less than one year old.

• total: 0

gorule-0000030

Obsolete GO_REFs are not allowed

• total: 0

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

• total: 0

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

• total: 0

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

• total: 0

gorule-0000043

Check for valid combination of evidence code and GO_REF

• total: 0

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

• total: 0

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

• total: 0

gorule-0000051

Some GO terms require a value in the Annotation Extension field

• total: 33

Messages

• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS00003CF0CD_9823 URS00003CF0CD_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01956|Rfam:RF01957 F Sus scrofa (pig) trophoblast-derived noncoding RNA misc_RNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS00006D539B_9823 URS00006D539B_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01956 F Sus scrofa (pig) sRNA (ENSSSCG00070020014.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS00006F3CD0_9823 URS00006F3CD0_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF02044 F Sus scrofa (pig) sRNA (ENSSSCG00070030377.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS0000EEBC99_9823 URS0000EEBC99_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF02045 F Sus scrofa (pig) sRNA (ENSSSCG00070030378.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS0000EEBE57_9823 URS0000EEBE57_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955 F Sus scrofa (pig) sRNA (ENSSSCG00070020018.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS0000EEC36F_9823 URS0000EEC36F_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01909 F Sus scrofa (pig) sRNA (ENSSSCG00070030380.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS0000EEF8A8_9823 URS0000EEF8A8_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01906 F Sus scrofa (pig) sRNA (ENSSSCG00070030010.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS0000EF2E0F_9823 URS0000EF2E0F_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01905 F Sus scrofa (pig) sRNA (ENSSSCG00070030011.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS0000EF3D53_9823 URS0000EF3D53_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01957 F Sus scrofa (pig) sRNA (ENSSSCG00070020008.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS0000EF58C7_9823 URS0000EF58C7_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01906 F Sus scrofa (pig) lncRNA (ENSSSCG00070030008.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS000194B345_9823 URS000194B345_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01956|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00005001364.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS0001953435_9823 URS0001953435_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00050015540.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS0001953C6A_9823 URS0001953C6A_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01956|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00030018037.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS0001956447_9823 URS0001956447_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00035061267.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS0001958C13_9823 URS0001958C13_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00045033875.1, ENSSSCG00055019668.1, ENSSSCG00065036144.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS0001959756_9823 URS0001959756_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01956|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00050015540.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS000195B04A_9823 URS000195B04A_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01956|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00065036144.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS000195D9A7_9823 URS000195D9A7_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01956|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00035061267.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS0001962DE5_9823 URS0001962DE5_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01956|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00015044230.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS00019670ED_9823 URS00019670ED_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00025075940.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS000196B38A_9823 URS000196B38A_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01956|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00015044214.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS000196C78F_9823 URS000196C78F_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01956|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00030018037.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS000196CACF_9823 URS000196CACF_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01906 F Sus scrofa (pig) lncRNA (ENSSSCG00060059839.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS000197102F_9823 URS000197102F_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01904|Rfam:RF01905|Rfam:RF01906 F Sus scrofa (pig) lncRNA (ENSSSCG00000046457.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS000197764F_9823 URS000197764F_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01956|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00015044230.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS0001977FBC_9823 URS0001977FBC_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00060063042.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS00019781C4_9823 URS00019781C4_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01956|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00045033875.1, ENSSSCG00055019668.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS0001978274_9823 URS0001978274_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01956|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00005001364.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS000219F47E_9823 URS000219F47E_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01956|Rfam:RF01957 F Sus scrofa (pig) partial nuclear paraspeckle assembly transcript 1 lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS000220068A_9823 URS000220068A_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01956|Rfam:RF01957 F Sus scrofa (pig) partial pNEAT1 lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS00025E800B_9823 URS00025E800B_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01956|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00000056754.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS00025EB558_9823 URS00025EB558_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01955|Rfam:RF01956|Rfam:RF01957 F Sus scrofa (pig) lncRNA (ENSSSCG00000060056.1) lncRNA taxon:9823 20230911 RNAcentral
• WARNING - Violates GO Rule: GORULE:0000051: Some GO terms require a value in the Annotation Extension field -- RNAcentral URS00025F8452_9823 URS00025F8452_9823 enables GO:0005515 GO_REF:0000115 IEA Rfam:RF01909 F Sus scrofa (pig) lncRNA (ENSSSCG00000053028.1) lncRNA taxon:9823 20230911 RNAcentral

gorule-0000055

References should have only one ID per ID space

• total: 0

gorule-0000057

Group specific filter rules should be applied to annotations

• total: 0

gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

• total: 0

gorule-0000061

Allowed gene product to term relations (gp2term)

• total: 0

other

• total: 0