Table of contents

Report

Group: goa - Dataset: goa_pig

SUMMARY

This report generated on 2024-11-03

Header From Original Association File

!gaf-version: 2.2
!
!The set of protein accessions included in this file is based on UniProt reference proteomes, which provide one protein per gene.
!They include the protein sequences annotated in Swiss-Prot or the longest TrEMBL transcript if there is no Swiss-Prot record.
!In addition this file included Swiss-Prot Isoforms, RNA and ComplexPortal annotations data
!
!date-generated: 2024-10-20 10:38
!generated-by: UniProt
!go-version: http://purl.obolibrary.org/obo/go/releases/2024-10-11/extensions/go-plus.owl
!

Contents

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other

MESSAGES

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GAF lines are parsed according to GAF 2.2 specifications

Messages

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No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

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IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

Messages

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IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

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IPI should not be used with GO:0003824 catalytic activity or descendents

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No annotations should be made to uninformative high level terms

Messages

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ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

Messages

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Taxon-appropriate annotation check

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Dual species taxon check

Messages

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With/From: IC annotations require a With/From GO ID

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IDA annotations must not have a With/From entry

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IPI annotations require a With/From entry

Messages

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Automatic repair of annotations to merged or obsoleted terms

Messages

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Check for, and filter, annotations made to retracted publications

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Each identifier in GAF is valid

Messages

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GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

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IEAs should be less than one year old.

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Obsolete GO_REFs are not allowed

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IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference

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Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

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Qualifier: IKR evidence code requires a NOT qualifier

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Check for valid combination of evidence code and GO_REF

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The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

Messages

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Annotations to ISS, ISA and ISO should not be self-referential

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References should have only one ID per ID space

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Object extensions should conform to the extensions-patterns.yaml file in metadata

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Allowed gene product to term relations (gp2term)

Messages

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Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

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TreeGrafter IEAs should be filtered for GO reference species

other

Predictions

GO:0005938 cell cortex FoldBasedPredictor GO:0070971 endoplasmic reticulum exit site part_of GO:0005938 cell cortex part_of CL:0000654 primary oocyte IDA
GO:0042383 sarcolemma FoldBasedPredictor GO:0005890 sodium:potassium-exchanging ATPase complex part_of UBERON:0000948 heart part_of GO:0042383 sarcolemma IDA
GO:0042585 germinal vesicle FoldBasedPredictor GO:0031965 nuclear membrane part_of GO:0042585 germinal vesicle IDA

Predictions (experimental)