Table of contents

Summary

GAF summary

Found 100788 annotations in 100804 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000014 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000014) Valid GO term ID, there are 2 violations with type Error.

For rule GO_AR:0000011 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000011) ND annotations to root nodes only, there is one violation with type Warning.

GAF Prediction Summary

Found 15 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf

Report

SUMMARY

STATISTICS

MESSAGES

ERROR

WARNING

OWLTools check

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #100788 annotations in 100804 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000014 Valid GO term ID Error count: 2
66947 GO_AR:0000014 Error The id 'GO:0001191' in the annotation is an obsolete class UniProtKB Q8IZ20 ZNF683 GO:0001191 PMID:26179882 IDA F Tissue-resident T-cell transcription regulator protein ZNF683 ZNF683 protein taxon:9606 20160512 UniProt
80843 GO_AR:0000014 Error The id 'GO:0001191' in the annotation is an obsolete class UniProtKB Q99697 PITX2 GO:0001191 PMID:16449236 IDA F Pituitary homeobox 2 PITX2|ARP1|RGS|RIEG|RIEG1 protein taxon:9606 20111012 BHF-UCL
#------------
# GO_AR:0000011 ND annotations to root nodes only Warning count: 1
99376 GO_AR:0000011 Warning ND annotations to root require reference ID UniProtKB Q9Y4H4 GPSM3 GO:0003674 PMID:2259622 ND F G-protein-signaling modulator 3 GPSM3|G18.1a protein taxon:9606 20061026 UniProt
#------------

Predictions

GO:0005622 intracellular AnnotationPropagation C GO:0006611 protein export from nucleus IDA
GO:0005623 cell AnnotationPropagation C GO:0006611 protein export from nucleus IDA
GO:0007186 G-protein coupled receptor signaling pathway AnnotationPropagation P GO:0016520 growth hormone-releasing hormone receptor activity NAS
GO:0016925 protein sumoylation AnnotationPropagation P GO:0061665 SUMO ligase activity IDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0042407 cristae formation IMP
GO:0016311 dephosphorylation AnnotationPropagation P GO:0106018 phosphatidylinositol-3,5-bisphosphate phosphatase activity IDA
GO:0005623 cell AnnotationPropagation C GO:0051481 negative regulation of cytosolic calcium ion concentration IDA
GO:0005623 cell AnnotationPropagation C GO:0048488 synaptic vesicle endocytosis IDA
GO:0098793 presynapse AnnotationPropagation C GO:0048488 synaptic vesicle endocytosis IDA
GO:0045202 synapse AnnotationPropagation C GO:0048488 synaptic vesicle endocytosis IDA
GO:0120012 intermembrane sphingolipid transfer AnnotationPropagation P GO:0120017 intermembrane ceramide transfer activity IDA
GO:0035627 ceramide transport AnnotationPropagation P GO:0120017 intermembrane ceramide transfer activity IDA
GO:0005622 intracellular AnnotationPropagation C GO:0016558 protein import into peroxisome matrix IMP
GO:0005623 cell AnnotationPropagation C GO:0016558 protein import into peroxisome matrix IMP
GO:0006508 proteolysis AnnotationPropagation P GO:0008236 serine-type peptidase activity IDA

Predictions (experimental)