Table of contents

Summary

GAF summary

Found 1655 annotations in 1670 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000014 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000014) Valid GO term ID, there are 2 violations with type Error.

For rule GO_AR:0000018 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000018) IPI annotations require a With/From entry, there are 108 violations with type Warning.

GAF Prediction Summary

Found 38 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf    go/releases/2019-11-16/extensions/go-gaf.owl

Report

Group: goa - Dataset: goa_human_complex

SUMMARY

This report generated on 2019-11-18

Header From Original Association File

!gaf-version: 2.1
!
!Note that the annotation set in this file is filtered in order to reduce redundancy; the full, unfiltered set can be found in
!ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gaf.gz
!
!Generated: 2019-11-11 16:08
!GO-version: http://purl.obolibrary.org/obo/go/releases/2019-11-09/extensions/go-plus.owl
!

Contents

gorule-0000002

gorule-0000006

gorule-0000007

gorule-0000008

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

gorule-0000017

gorule-0000018

gorule-0000028

gorule-0000029

gorule-0000030

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

gorule-0000050

other

MESSAGES

gorule-0000002

No 'NOT' annotations to 'protein binding ; GO:0005515'

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

gorule-0000007

IPI should not be used with catalytic activity molecular function terms

gorule-0000008

No annotations should be made to uninformative high level terms

gorule-0000011

ND annotations to root nodes only; and only root nodes can have the evidence code ND.

gorule-0000013

Taxon-appropriate annotation check

gorule-0000015

Dual species taxon check

gorule-0000016

With/From: IC annotations require a With/From GO ID

gorule-0000017

IDA annotations must not have a With/From entry

gorule-0000018

IPI annotations require a With/From entry

Messages

gorule-0000028

Aspect can only be one of C, P, F and should be repaired using the GO term

gorule-0000029

All IEAs over a year old are removed

gorule-0000030

Deprecated GO_REFs are not allowed

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

gorule-0000043

Check for valid combination of evidence code and GO_REF

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

other

OWLTools check

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #1655 annotations in 1670 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000014 Valid GO term ID Error count: 2
142 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation ComplexPortal CPX-1120 abeta-40-42-oligomer_human GO:1902951 PMID:17360908 IMP UniProtKB:P05067:VAR_000023 P Amyloid-beta protein 40/42 oligomeric complex fibrillar amyloid-beta oligomer|Annular protofibril complex|Amyloid-beta fibrils|beta-amyloid protein 40/42 heterooligomer|beta-amyloid protein 40/42 complex|beta-amyloid-40/42 complex|beta amyloid protein 40/42 complex|amyloid-beta-40/42 complex|amyloid beta protein 40/42 complex|amyloid-beta protein 40/42 heterooligomer|amyloid-beta-40/42 heterooligomer|amyloid beta protein 40/42 heterooligomer|beta-amyloid-40/42 heterooligomer|beta amyloid protein 40/42 heterooligomer|Abeta protein 40/42 complex|APP oligomer|Type 1 amyloid-beta oligomer|ADDL complex|pre-fibrillar amyloid-beta oligomer|prefibrillar amyloid-beta oligomer|Type 2 amyloid-beta oligomer protein_complex taxon:9606 20170626 ARUK-UCL has_agent(GO:0097720),part_of(GO:0051826),regulates_o_occurs_in(CL:1001571)
209 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation ComplexPortal CPX-1134 abeta-42-oligomer_human GO:0032147 PMID:23386614 IGI UniProtKB:P04925 P Amyloid-beta protein 42 oligomeric complex pre-fibrillar amyloid-beta oligomer|prefibrillar amyloid-beta oligomer|Type 2 amyloid-beta oligomer|fibrillar amyloid-beta oligomer|Annular protofibril complex|Amyloid-beta fibrils|beta-amyloid protein 42 heterooligomer|beta-amyloid protein 42 complex|beta-amyloid-42 complex|beta amyloid protein 42 complex|amyloid-beta-42 complex|amyloid beta protein 42 complex|amyloid-beta protein 42 heterooligomer|amyloid-beta-42 heterooligomer|amyloid beta protein 42 heterooligomer|beta-amyloid-42 heterooligomer|beta amyloid protein 42 heterooligomer|Abeta protein 42 complex|APP oligomer|Type 1 amyloid-beta oligomer|ADDL complex protein_complex taxon:9606 20170626 ARUK-UCL has_agent(GO:0045121),has_regulation_target(UniProtKB:P06241)
#------------
# GO_AR:0000018 IPI annotations require a With/From entry Warning count: 108
16 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1012 tenascin-w_human GO:0005178 PMID:17909022 IPI F Tenascin-W complex TNN hexamer|Tenascin W complex protein_complex taxon:9606 20170313 ComplexPortal
22 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1014 tenascin-x_human GO:0098639 PMID:17033827 IPI F Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9606 20180918 ComplexPortal
31 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1032 snurportin_human GO:0000341 PMID:9670026 IPI F Importin complex, Snurportin variant Snurportin complex|Importin complex, SNUPN variant|KPNB1:SNUPN protein_complex taxon:9606 20170608 ComplexPortal
43 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1062 abeta-40-42_human GO:0046872 PMID:26898943 IPI F Amyloid-beta protein 40/42 complex beta-amyloid protein 40/42 heterodimer|beta-amyloid protein 40/42 complex|beta-amyloid-40/42 complex|beta amyloid protein 40/42 complex|amyloid-beta-40/42 complex|amyloid beta protein 40/42 complex|amyloid-beta protein 40/42 heterodimer|amyloid-beta-40/42 heterodimer|amyloid beta protein 40/42 heterodimer|beta-amyloid-40/42 heterodimer|beta amyloid protein 40/42 heterodimer|Abeta protein 40/42 complex|APP dimer protein_complex taxon:9606 20170410 ComplexPortal
56 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1069 abeta-40_human GO:0046872 PMID:26898943 IPI F Amyloid-beta protein 40 complex beta-amyloid protein 40 homodimer|beta-amyloid protein 40 complex|beta-amyloid-40 complex|beta amyloid protein 40 complex|amyloid-beta-40 complex|amyloid beta protein 40 complex|amyloid-beta protein 40 homodimer|amyloid-beta-40 homodimer|amyloid beta protein 40 homodimer|beta-amyloid-40 homodimer|beta amyloid protein 40 homodimer|APP dimer|Abeta protein 40 complex protein_complex taxon:9606 20170410 ComplexPortal
71 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1070 abeta-42_human GO:0046872 PMID:26898943 IPI F Amyloid-beta protein 42 complex beta-amyloid protein 42 homodimer|beta-amyloid protein 42 complex|beta-amyloid-42 complex|beta amyloid protein 42 complex|amyloid-beta-42 complex|amyloid beta protein 42 complex|amyloid-beta protein 42 homodimer|amyloid-beta-42 homodimer|amyloid beta protein 42 homodimer|beta-amyloid-42 homodimer|beta amyloid protein 42 homodimer|APP dimer|Abeta protein 42 complex protein_complex taxon:9606 20170410 ComplexPortal
91 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1072 prkra-risc_complex_human GO:0003725 PMID:23661684 IPI F RISC-loading complex, PRKRA variant AGO2:DICER1:PRKRA|miRLC complex|RLC complex|microRNA loading complex|PACT-containing RISC-loading complex protein_complex taxon:9606 20170410 ComplexPortal
95 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1072 prkra-risc_complex_human GO:0035198 PMID:23661684 IPI F RISC-loading complex, PRKRA variant AGO2:DICER1:PRKRA|miRLC complex|RLC complex|microRNA loading complex|PACT-containing RISC-loading complex protein_complex taxon:9606 20170410 ComplexPortal
99 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1076 mcrd-polya-bridging_human GO:0008143 PMID:11051545 IPI F mCRD-poly(A)-bridging complex major coding region determinant of instability-mediated mRNA stability complex|major coding-region instability determinant - poly(A) tail-bridging complex|CSDE1:HNRNPD:PABPC1:PAIP1:SYNCRIP|major coding-region determinant of instability - poly(A) tail-bridging complex|mCRD-mediated mRNA stability complex|major coding region instability determinant-mediated mRNA stability complex protein_complex taxon:9606 20170410 ComplexPortal
102 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1076 mcrd-polya-bridging_human GO:1990825 PMID:11051545 IPI F mCRD-poly(A)-bridging complex major coding region determinant of instability-mediated mRNA stability complex|major coding-region instability determinant - poly(A) tail-bridging complex|CSDE1:HNRNPD:PABPC1:PAIP1:SYNCRIP|major coding-region determinant of instability - poly(A) tail-bridging complex|mCRD-mediated mRNA stability complex|major coding region instability determinant-mediated mRNA stability complex protein_complex taxon:9606 20170410 ComplexPortal
107 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1080 crd-mrna_human GO:1990825 PMID:19029303 IPI F CRD-mediated mRNA stability complex DHX9:HNRNPU:IGF2BP1:SYNCRIP:YBX1|coding-region determinant of instability-mediated mRNA stability complex|coding-region instability determinant -mediated mRNA stability complex protein_complex taxon:9606 20170410 ComplexPortal
112 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1097 c2u-editosome_human GO:1990825 PMID:11134005 IPI F C-to-U editosome complex ABBP1-ACF-APOBEC1-GRYRBP complex|ABBP1-ASF-APOBEC1-GRYRBP complex|ApoB mRNA editing enzyme complex|Apolipoprotein B mRNA-editing enzyme complex|APOBEC-1 editosome complex|APOBEC1 editosome complex|C to U editosome complex|ApoB mRNA-editing enzyme complex|2xAPOBEC1:A1CF:HNRNPAB:SYNCRIP|Apolipoprotein B mRNA editing enzyme complex protein_complex taxon:9606 20170410 ComplexPortal
114 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1099 b-wich_human GO:0019843 PMID:16603771 IPI F B-WICH chromatin remodelling complex BAZ1B:DDX21:DEK:ERCC6:MYBBP1A:MYO1C:SF3B1:SMARCA5 protein_complex taxon:9606 20170608 ComplexPortal
148 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1123 foxo3-myc_human GO:0000978 PMID:18393360 IPI F FOXO3-MYC complex FOXO3:MYC protein_complex taxon:9606 20170712 ComplexPortal
378 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-114 gp1b_human GO:0007597 PMID:10501658 IPI P Glycoprotein Ib-IX-V complex 2xGP1BA:2xGP1BB:2xGP5:GP9|GPIb-IX-V complex|CD42|GPIb-V-IX complex protein_complex taxon:9606 20150629 ComplexPortal
424 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1313 slbp_slip1_human GO:0071207 PMID:23286197 IPI F SLBP-SLIP1 complex MIF4GD:SLBP|SLBP-MIF4GD complex protein_complex taxon:9606 20180910 ComplexPortal
435 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-134 tarbp2-risc_complex_human GO:0003725 PMID:23661684 IPI F RISC-loading complex, TARBP2 variant AGO2:DICER1:TARBP2|miRLC complex|RLC complex|microRNA loading complex protein_complex taxon:9606 20170309 ComplexPortal
444 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-134 tarbp2-risc_complex_human GO:0035198 PMID:16271387 IPI F RISC-loading complex, TARBP2 variant AGO2:DICER1:TARBP2|miRLC complex|RLC complex|microRNA loading complex protein_complex taxon:9606 20170309 ComplexPortal
449 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1427 cbc_human GO:0000340 PMID:8069914 IPI F Nuclear cap-binding complex CBP20-CBP80 complex|CBC|NCBP1:NCBP2|Cap complex protein_complex taxon:9606 20180214 ComplexPortal
450 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1427 cbc_human GO:0003729 PMID:8069914 IPI F Nuclear cap-binding complex CBP20-CBP80 complex|CBC|NCBP1:NCBP2|Cap complex protein_complex taxon:9606 20180214 ComplexPortal
452 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1427 cbc_human GO:0006406 PMID:21326824 IPI P Nuclear cap-binding complex CBP20-CBP80 complex|CBC|NCBP1:NCBP2|Cap complex protein_complex taxon:9606 20180214 ComplexPortal
486 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1749 collagen_x_human GO:0005509 PMID:11839302 IPI F Collagen type X trimer Type X collagen|COL10A1 trimer protein_complex taxon:9606 20141016 ComplexPortal
523 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1919 c1q_human GO:0019865 PMID:29449492 IPI F Complement component C1q complex C1Q|Complement 1Q|C1QA-C1QB-C1QC complex|6xC1QA:6xC1QB:6xC1QC protein_complex taxon:9606 20141016 ComplexPortal
536 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1941 ejc_human GO:0003727 PMID:16931718 IPI F Exon junction core complex, MAGOH variant EJC|exon-exon junction complex|CASC3:EIF4A3:MAGOH:RBM8A protein_complex taxon:9606 20160913 ComplexPortal
562 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1993 ku70_80_human GO:0003690 PMID:11493912 IPI F Ku70:Ku80 complex Ku70:Ku86 complex|G22P1:G22P2 complex|XRCC5:XRCC6|Ku complex protein_complex taxon:9606 20141016 ComplexPortal
640 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-2159 gabar_a1_b2_g2_human GO:0008144 PMID:29950725 IPI F GABA-A receptor, alpha-1/beta-2/gamma-2 GABRA1:GABRB2:GABRC2|GABA-A receptor alpha1-beta2-gamma2 protein_complex taxon:9606 20190306 ComplexPortal
643 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-2159 gabar_a1_b2_g2_human GO:0042165 PMID:29950725 IPI F GABA-A receptor, alpha-1/beta-2/gamma-2 GABRA1:GABRB2:GABRC2|GABA-A receptor alpha1-beta2-gamma2 protein_complex taxon:9606 20190306 ComplexPortal
649 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-2167 gabar_a1_b3_g2_human GO:0008144 PMID:30602789 IPI F GABA-A receptor, alpha-1/beta-3/gamma-2 Type A gamma-aminobutyric acid receptor|GABRA1:GABRB3:GABRC2|GABA-A receptor alpha1-beta3-gamma2 protein_complex taxon:9606 20190305 ComplexPortal
650 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-2167 gabar_a1_b3_g2_human GO:0008503 PMID:30602789 IPI F GABA-A receptor, alpha-1/beta-3/gamma-2 Type A gamma-aminobutyric acid receptor|GABRA1:GABRB3:GABRC2|GABA-A receptor alpha1-beta3-gamma2 protein_complex taxon:9606 20190305 ComplexPortal
652 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-2167 gabar_a1_b3_g2_human GO:0042165 PMID:30602789 IPI F GABA-A receptor, alpha-1/beta-3/gamma-2 Type A gamma-aminobutyric acid receptor|GABRA1:GABRB3:GABRC2|GABA-A receptor alpha1-beta3-gamma2 protein_complex taxon:9606 20190305 ComplexPortal
698 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-2194 rrm1-rrm2_human GO:0000287 PMID:21336276 IPI F Ribonucleoside-diphosphate reductase RR1 complex, RRM2 variant RRM1:RRM2|Ribonucleotide diphosphate reductase RR1 complex|Class I ribonucleotide reductase complex|RNR complex|RIR1-RIR2 complex|Class I RR complex protein_complex taxon:9606 20160411 ComplexPortal
701 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-2194 rrm1-rrm2_human GO:0008199 PMID:24253041 IPI F Ribonucleoside-diphosphate reductase RR1 complex, RRM2 variant RRM1:RRM2|Ribonucleotide diphosphate reductase RR1 complex|Class I ribonucleotide reductase complex|RNR complex|RIR1-RIR2 complex|Class I RR complex protein_complex taxon:9606 20160411 ComplexPortal
742 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-2375 tapasin-erp57_human GO:0042605 PMID:17603487 IPI F Tapasin-ERp57 complex PDIA3:TAPBP protein_complex taxon:9606 20160804 ComplexPortal
788 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-2808 fvii-tf_human GO:0016021 PMID:18640965 IPI C Factor VII - TF complex Coagulation Factor VII - Tissue Factor complex|Factor VII - Tissue Factor complex|FVIIa - TF complex|F7-F3 complex|Coagulation Factor VIIa - Tissue Factor complex|Coagulation Factor VII - Tissue Factor 3 complex|Coagulation Factor VIIa - Tissue Factor 3 complex|FA7 - TF3 complex|F3:F7light:F7heavy protein_complex taxon:9606 20151021 ComplexPortal
806 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-308 ddb1-ddb2_human GO:0003684 PMID:22822215 IPI F UV DNA damage recognition complex DBB1-DBB2 DDB1:DDB2|UV-DDB protein_complex taxon:9606 20170608 ComplexPortal
832 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-316 ctnnb1-lef1_human GO:0000977 PMID:11751639 IPI F beta1-catenin - LEF1 complex CTNNB1:LEF1 protein_complex taxon:9606 20160113 ComplexPortal
875 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-3229 clock-bmal1_human GO:0070888 PMID:12738229 IPI F CLOCK-BMAL1 transcription complex ARNTL:CLOCK|BMAL1/CLOCK complex protein_complex taxon:9606 20141016 ComplexPortal
882 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-3230 clock-bmal2_human GO:0070888 PMID:12738229 IPI F CLOCK-BMAL2 transcription complex ARNTL2:CLOCK|BMAL2/CLOCK complex protein_complex taxon:9606 20180427 ComplexPortal
978 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-3624 alt-cbc_human GO:0000340 PMID:26382858 IPI F Alternative nuclear cap-binding complex NCBP1:NCBP3|alternative cap complex|CBC protein_complex taxon:9606 20180808 ComplexPortal
979 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-3624 alt-cbc_human GO:0003729 PMID:26382858 IPI F Alternative nuclear cap-binding complex NCBP1:NCBP3|alternative cap complex|CBC protein_complex taxon:9606 20180808 ComplexPortal
984 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-3624 alt-cbc_human GO:0017069 PMID:26382858 IPI F Alternative nuclear cap-binding complex NCBP1:NCBP3|alternative cap complex|CBC protein_complex taxon:9606 20180808 ComplexPortal
991 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-369 rrm1-rrm2b_human GO:0000287 PMID:21336276 IPI F Ribonucleoside-diphosphate reductase RR1 complex, RRM2B variant RRM1:RRM2B|Ribonucleotide diphosphate reductase RR1 complex|Class I ribonucleotide reductase complex|RNR complex|RIR1-RIR2B complex|p53-inducible ribonucleotide reductase complex|Class I RR complex protein_complex taxon:9606 20160411 ComplexPortal
997 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-369 rrm1-rrm2b_human GO:0008199 PMID:19728742 IPI F Ribonucleoside-diphosphate reductase RR1 complex, RRM2B variant RRM1:RRM2B|Ribonucleotide diphosphate reductase RR1 complex|Class I ribonucleotide reductase complex|RNR complex|RIR1-RIR2B complex|p53-inducible ribonucleotide reductase complex|Class I RR complex protein_complex taxon:9606 20160411 ComplexPortal
1014 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-3762 apoptosome_human GO:0005524 PMID:10206961 IPI F Apoptosome 7xAPAF1:7xCYCS:4xCASP9:4xCASP9|Apaf-1 apoptosome|Apaf-1-caspase-9 complex|Holo-apoptosome protein_complex taxon:9606 20190909 ComplexPortal
1022 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-381 interleukin12_human GO:0005143 PMID:11114383 IPI F Interleukin-12 complex IL12A:IL12B|p35p40 complex|CLMF|IL12 complex|IL-12 complex|Cytotoxic lymphocyte maturation factor|p35-p40 complex|Natural killer cell stimulatory factor|NKSF protein_complex taxon:9606 20160411 ComplexPortal
1085 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-419 fact_human GO:0042393 PMID:10421373 IPI F FACT complex SSRP1:SUPT16H|Human facilitator of chromatin transactions complex|Heterodimeric transcriptional elongation factor FACT protein_complex taxon:9606 20160622 ComplexPortal
1126 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-455 rsf1-smarca5_human GO:0031491 PMID:12972596 IPI F RSF complex RSF1:SMARCA5|RSF1:SNF2H complex|XAP8:SMARCA5 complex|RSF chromatin-remodeling complex|RSF1:WCRF135 complex protein_complex taxon:9606 20160713 ComplexPortal
1128 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-455 rsf1-smarca5_human GO:0042393 PMID:11691835 IPI F RSF complex RSF1:SMARCA5|RSF1:SNF2H complex|XAP8:SMARCA5 complex|RSF chromatin-remodeling complex|RSF1:WCRF135 complex protein_complex taxon:9606 20160713 ComplexPortal
1181 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-476 exosome-nuclear_human GO:0003723 PMID:17174896 IPI F Nuclear exosome complex, DIS3-EXOSC10 variant DIS3:EXOSC1:EXOSC2:EXOSC3:EXOSC4:EXOSC5:EXOSC6:EXOSC7:EXOSC8:EXOSC9:EXOSC10|Nuclear exosome complex, RRP44-RRP6 variant protein_complex taxon:9606 20160913 ComplexPortal
1197 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-480 nfat-fos-jun_human GO:0001012 PMID:9510247 IPI F AP-1 transcription factor complex FOS-JUN-NFATC2 FOS:JUN:NFATC2 protein_complex taxon:9606 20160913 ComplexPortal
1203 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-482 inip-ints3-nabp2_human GO:0003697 PMID:24630995 IPI F SOSS1 complex INIP:INTS3:NABP2|sensor of ssDNA|IMS1|INTS3-NABP2-C9orf80 complex|INTS3-NABP2-SSBIP1 complex|SOSSA-SOSSB1-SOSSC complex protein_complex taxon:9606 20160913 ComplexPortal
1219 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-486 fos_jun_human GO:0001012 PMID:7816143 IPI F AP-1 transcription factor complex FOS-JUN AP-1 complex|FOS-JUN complex|c-FOS/c-JUN complex|FOS:JUN protein_complex taxon:9606 20160913 ComplexPortal
1232 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-490 c-jun_human GO:0001012 PMID:17283046 IPI F AP-1 transcription factor complex JUN dimer c-JUN homodimer|JUN dimer|AP-1 transcription factor complex|JUN homodimer protein_complex taxon:9606 20160913 ComplexPortal
1248 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-511 eme1-mus81_human GO:0070337 PMID:24733841 IPI F Deoxyribonuclease complex MUS81-EME1 EME1:MUS81|MUS81-MMS4 endonuclease complex|Deoxyribonuclease complex MUS81-MMS4|MUS81 complex protein_complex taxon:9606 20160913 ComplexPortal
1253 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-519 tfiia_human GO:0000978 PMID:12972251 IPI F Transcription factor complex TFIIA Transcription factor IIA|Transcription initiation factor IIA|GTF2A1:GTF2A2 protein_complex taxon:9606 20161014 ComplexPortal
1269 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-538 pcna_human-1 GO:0003677 PMID:28071730 IPI F PCNA homotrimer Proliferating Cell Nuclear Antigen complex|PCNA complex|Proliferating Cell Nuclear Antigen|PCNA trimer protein_complex taxon:9606 20141016 ComplexPortal
1271 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-538 pcna_human-1 GO:0003684 PMID:24939902 IPI F PCNA homotrimer Proliferating Cell Nuclear Antigen complex|PCNA complex|Proliferating Cell Nuclear Antigen|PCNA trimer protein_complex taxon:9606 20141016 ComplexPortal
1283 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-553 isocit_dh_human GO:0051287 PMID:14555658 IPI F Mitochondrial isocitrate dehydrogenase complex (NAD+) Isocitrate dehydrogenase (NAD+) holoenzyme|NAD-dependent isocitrate dehydrogenase|Isocitrate dehydrogenase holoenzyme|threo-Ds-isocitrate:NAD+ oxidoreductase (decarboxylating)|IDH|beta-ketoglutaric-isocitric carboxylase|nicotinamide adenine dinucleotide isocitrate dehydrogenase|NAD isocitrate dehydrogenase|NAD isocitric dehydrogenase|NAD-linked isocitrate dehydrogenase|NAD-specific isocitrate dehydrogenase|isocitric acid dehydrogenase|isocitric dehydrogenase|4xIDH3A:2xIDH3B:2xIDH3G protein_complex taxon:9606 20180201 ComplexPortal
1292 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-586 eme2-mus81_human GO:0070337 PMID:17289582 IPI F Deoxyribonuclease complex MUS81-EME2 MUS81-MMS4 endonuclease complex|EME2:MUS81|MUS81 complex|Deoxyribonuclease complex MUS81-MMS4 protein_complex taxon:9606 20160913 ComplexPortal
1294 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-591 exosome-nucleolar_human GO:0003723 PMID:17174896 IPI F Nucleolar exosome complex, EXOSC10 variant EXOSC1:EXOSC2:EXOSC3:EXOSC4:EXOSC5:EXOSC6:EXOSC7:EXOSC8:EXOSC9:EXOSC10|Nuclear exosome complex, RRP6 variant protein_complex taxon:9606 20160913 ComplexPortal
1300 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-592 exosome-cytoplasmic1_human GO:0003723 PMID:20531386 IPI F Cytoplasmic exosome complex, DIS3L variant DIS3L:EXOSC1:EXOSC2:EXOSC3:EXOSC4:EXOSC5:EXOSC6:EXOSC7:EXOSC8:EXOSC9 protein_complex taxon:9606 20160913 ComplexPortal
1306 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-593 exosome-dis3variant_human GO:0003723 PMID:17174896 IPI F Exosome complex, DIS3 variant DIS3:EXOSC1:EXOSC2:EXOSC3:EXOSC4:EXOSC5:EXOSC6:EXOSC7:EXOSC8:EXOSC9|Nuclear exosome complex, RRP44 variant protein_complex taxon:9606 20160913 ComplexPortal
1315 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-600 exosome-cytoplasmic2_human GO:0003723 PMID:20531386 IPI F Cytoplasmic exosome complex, DIS3L-EXOSC10 variant Nuclear exosome complex, DIS3L-RRP6 variant|DIS3L:EXOSC1:EXOSC2:EXOSC3:EXOSC4:EXOSC5:EXOSC6:EXOSC7:EXOSC8:EXOSC9:EXOSC10 protein_complex taxon:9606 20160913 ComplexPortal
1320 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-602 tgfb1_human-1 GO:0005160 PMID:20207738 IPI F TGF-beta-1 complex TGFB1 dimer|TGF-beta-1 homodimer|TGFB1 complex|TGFB1 homodimer|Transforming growth factor beta-1 protein_complex taxon:9606 20161219 ComplexPortal
1325 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-605 tgfb2_human-1 GO:0005160 PMID:20207738 IPI F TGF-beta-2 complex TGFB2 dimer|Transforming growth factor beta-2|TGF-beta-2 homodimer|TGFB2 homodimer|TGFB2 complex protein_complex taxon:9606 20161219 ComplexPortal
1328 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-606 tgfb3_human-1 GO:0005160 PMID:18243111 IPI F TGF-beta-3 complex TGFB3 complex|TGFB3 homodimer|TGF-beta-3 homodimer|Transforming growth factor beta-3|TGFB3 dimer protein_complex taxon:9606 20161219 ComplexPortal
1338 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-631 rxra-vdr_human GO:0070644 PMID:15225774 IPI F RXRalpha-VDR nuclear hormone receptor complex RXRA:VDR|NR2B1-NR1I1 complex|RXRalpha-VDR retinoic acid receptor complex protein_complex taxon:9606 20161219 ComplexPortal
1339 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-631 rxra-vdr_human GO:1902098 PMID:8164684 IPI F RXRalpha-VDR nuclear hormone receptor complex RXRA:VDR|NR2B1-NR1I1 complex|RXRalpha-VDR retinoic acid receptor complex protein_complex taxon:9606 20161219 ComplexPortal
1341 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-632 rxra-lxra_human GO:0001972 PMID:7744246 IPI F RXRalpha-LXRalpha nuclear hormone receptor complex NR2B1-NR1H3 complex|NR1H3:RXRA protein_complex taxon:9606 20161014 ComplexPortal
1344 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-632 rxra-lxra_human GO:0044323 PMID:7744246 IPI F RXRalpha-LXRalpha nuclear hormone receptor complex NR2B1-NR1H3 complex|NR1H3:RXRA protein_complex taxon:9606 20161014 ComplexPortal
1350 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-654 rxra-thrb_human GO:0044323 PMID:7746322 IPI F RXRalpha-TRbeta nuclear hormone receptor complex RXRA:THRB|Thyroid hormone receptor complex|NR2B1-NR1A2 complex protein_complex taxon:9606 20161219 ComplexPortal
1352 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-654 rxra-thrb_human GO:0070324 PMID:26289479 IPI F RXRalpha-TRbeta nuclear hormone receptor complex RXRA:THRB|Thyroid hormone receptor complex|NR2B1-NR1A2 complex protein_complex taxon:9606 20161219 ComplexPortal
1362 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-664 rxra-rxra_human GO:0044323 PMID:10669605 IPI F RXRalpha-RXRalpha retinoic acid receptor complex RXRA:RXRA|NR2B1:NR2B1 complex protein_complex taxon:9606 20161014 ComplexPortal
1369 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-688 nurf_human GO:0001047 PMID:14609955 IPI F NuRF chromatin remodelling complex SNF2L complex|nucleosome-remodeling factor|BPTF:RBBP4:RBBP7:SNF2L1 complex|BPTF:RBBP4:RBBP7:SMARCA1 |BPTF:RBBP4:RBBP7:SNF2L complex|FAC1:RBBP4:RBBP7:SMARCA1 complex|FALZ:RBBP4:RBBP7:SMARCA1 complex|BPTF:RBAP48:RBBP7:SMARCA1 complex|BPTF:RBBP4:RBAP46:SMARCA1 complex protein_complex taxon:9606 20161014 ComplexPortal
1374 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-688 nurf_human GO:0035064 PMID:16728976 IPI F NuRF chromatin remodelling complex SNF2L complex|nucleosome-remodeling factor|BPTF:RBBP4:RBBP7:SNF2L1 complex|BPTF:RBBP4:RBBP7:SMARCA1 |BPTF:RBBP4:RBBP7:SNF2L complex|FAC1:RBBP4:RBBP7:SMARCA1 complex|FALZ:RBBP4:RBBP7:SMARCA1 complex|BPTF:RBAP48:RBBP7:SMARCA1 complex|BPTF:RBBP4:RBAP46:SMARCA1 complex protein_complex taxon:9606 20161014 ComplexPortal
1475 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-745 rnase_h2_human GO:0071667 PMID:21177858 IPI F RNase H2 complex Ribonuclease H2 complex|RNase HII|Ribonuclease HII complex|RNASEH2A:RNASEH2B:RNASEH2C protein_complex taxon:9606 20190830 ComplexPortal
1482 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-77 msh2-msh3_human GO:0005524 PMID:19228687 IPI F DNA mismatch repair MutSbeta complex MSH2:MSH3|DNA lesion recognition complex MutSbeta|MutS heterodimer protein_complex taxon:9606 20150629 ComplexPortal
1485 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-77 msh2-msh3_human GO:0030983 PMID:8942985 IPI F DNA mismatch repair MutSbeta complex MSH2:MSH3|DNA lesion recognition complex MutSbeta|MutS heterodimer protein_complex taxon:9606 20150629 ComplexPortal
1486 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-785 chrac_human GO:0000182 PMID:14759371 IPI F CHRAC chromatin remodeling complex BAZ1A:CHRAC1:POLE3:SMARCA5|ACF1:CHRAC1:POLE3:SMARCA5 complex|WCRF180:CHRAC1:POLE3:SMARCA5 complex|HSPC317:CHRAC1:POLE3:SMARCA5 complex|BAZ1A:CHRAC15:POLE3:SMARCA5 complex|BAZ1A:CHRAC1:CHRAC17:SMARCA5 complex|BAZ1A:CHRAC1:POLE3:SNF2H complex|BAZ1A:CHRAC1:POLE3:WCRF135 complex protein_complex taxon:9606 20161219 ComplexPortal
1492 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-787 gins_human GO:0003697 PMID:17557111 IPI F GINS complex GINS1:GINS2:GINS3:GINS4|Go, Ichi, Ni and San complex|Sld5-Psf1-Psf2-Psf3 complex protein_complex taxon:9606 20190830 ComplexPortal
1504 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-80 msh2-msh6_human GO:0000287 PMID:17531815 IPI F DNA mismatch repair MutSalpha complex MSH2:MSH6|DNA lesion recognition complex MutSalpha|MutS heterodimer protein_complex taxon:9606 20150629 ComplexPortal
1505 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-80 msh2-msh6_human GO:0003684 PMID:10078208 IPI F DNA mismatch repair MutSalpha complex MSH2:MSH6|DNA lesion recognition complex MutSalpha|MutS heterodimer protein_complex taxon:9606 20150629 ComplexPortal
1506 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-80 msh2-msh6_human GO:0005524 PMID:17531815 IPI F DNA mismatch repair MutSalpha complex MSH2:MSH6|DNA lesion recognition complex MutSalpha|MutS heterodimer protein_complex taxon:9606 20150629 ComplexPortal
1509 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-809 nsl_human GO:0001047 PMID:25971333 IPI F NSL histone acetyltransferase complex HFC1:KANSL1:KANSL2:KANSL3:KAT8:MCRS1:OGT:PHF20:WDR5 complex|HCFC1:KANSL1:KANSL2:NSL3:KAT8:MCRS1:OGT:PHF20:WDR5 complex|HCFC1:KANSL1:KANSL2:KANSL3:MOF:MCRS1:OGT:PHF20:WDR5 complex|HCFC1:KANSL1:KANSL2:KANSL3: MYST1:MCRS1:OGT:PHF20:WDR5 complex|HCFC1:KANSL1:KANSL2:KANSL3:KAT8:MSP58:OGT:PHF20:WDR5 complex|HCFC1:KANSL1:KANSL2:KANSL3:KAT8:INO80Q:OGT:PHF20:WDR5 complex|HCFC1:KANSL1:KANSL2:KANSL3:KAT8:MCRS1:OGT:TZP:WDR5 complex|HCFC1:KANSL1:KANSL2:KANSL3:KAT8:MCRS1:OGT:NZF:WDR5 complex|HCF1:KANSL1:KANSL2:KANSL3:KAT8:MCRS1:OGT:PHF20:WDR5 complex|Nonspecific lethal complex|HCFC1:KANSL1:KANSL2:KANSL3:KAT8:MCRS1:OGT:PHF20:WDR5|HCFC1:NSL1:KANSL2:KANSL3:KAT8:MCRS1:OGT:PHF20:WDR5 complex|HCFC1:MSL1V1:KANSL2:KANSL3:KAT8:MCRS1:OGT:PHF20:WDR5 complex|HCFC1:KIAA1267:KANSL2:KANSL3:KAT8:MCRS1:OGT:PHF20:WDR5 complex|HCFC1:CENP-36:KANSL2:KANSL3:KAT8:MCRS1:OGT:PHF20:WDR5 complex|HCFC1:KANSL1:NSL2:KANSL3:KAT8:MCRS1:OGT:PHF20:WDR5 complex|HCFC1:KANSL1:KANSL2:KIAA1310:KAT8:MCRS1:OGT:PHF20:WDR5 complex|HCFC1:KANSL1:KANSL2:KANSL3:KAT8:MCRS1:OGT:GLEA2:WDR5 complex|HCFC1:KANSL1:KANSL2:KANSL3:KAT8:MCRS1:OGT:PHF20:BIG3 complex|HCFC1:KANSL1:KANSL2:KANSL3:KAT8:MCRS1:OGT:HCA58:WDR5 complex protein_complex taxon:9606 20161219 ComplexPortal
1519 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-816 rxra-rara-ncoa2_human GO:0001972 PMID:21152046 IPI F RXRalpha-RARalpha-NCOA2 retinoic acid receptor complex RXR-RAR-NCOA2 complex|NR1B1-NR2B1-NCOA2 complex|RXRA-RARA-TIF2 complex|2xNCOA2:RARA:RXRA protein_complex taxon:9606 20170131 ComplexPortal
1522 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-846 ino80_human-1 GO:0001047 PMID:26340092 IPI F INO80 chromatin remodeling complex ACTL6A:ACTR5:ACTR8:INO80B:INO80C:INO80D:INO80E:INO80:MCRS1:NFRKB:RUVBL1:RUVBL2:Amida:YY1:UCHL5|ARP4:ACTR5:ACTR8:INO80B:INO80C:INO80D:INO80E:INO80:MCRS1:NFRKB:RUVBL1:RUVBL2:TFPT:YY1:UCHL5|BAF53A:ACTR5:ACTR8:INO80B:INO80C:INO80D:INO80E:INO80:MCRS1:NFRKB:RUVBL1:RUVBL2:TFPT:YY1:UCHL5|ACTL6A:ACTR5:ACTR8:INO80B:INO80C:INO80D:INO80E:INO80:MCRS1:NFRKB:RUVBL1:RUVBL2:TFPT:YY1:UCHL5 protein_complex taxon:9606 20190805 ComplexPortal
1526 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-846 ino80_human-1 GO:0035326 PMID:27641337 IPI F INO80 chromatin remodeling complex ACTL6A:ACTR5:ACTR8:INO80B:INO80C:INO80D:INO80E:INO80:MCRS1:NFRKB:RUVBL1:RUVBL2:Amida:YY1:UCHL5|ARP4:ACTR5:ACTR8:INO80B:INO80C:INO80D:INO80E:INO80:MCRS1:NFRKB:RUVBL1:RUVBL2:TFPT:YY1:UCHL5|BAF53A:ACTR5:ACTR8:INO80B:INO80C:INO80D:INO80E:INO80:MCRS1:NFRKB:RUVBL1:RUVBL2:TFPT:YY1:UCHL5|ACTL6A:ACTR5:ACTR8:INO80B:INO80C:INO80D:INO80E:INO80:MCRS1:NFRKB:RUVBL1:RUVBL2:TFPT:YY1:UCHL5 protein_complex taxon:9606 20190805 ComplexPortal
1555 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-890 c3po_human GO:0035197 PMID:21552258 IPI F C3PO endoribonuclease complex 6xTSN:2xTSNAX|C3PO complex|TSN-TRAX complex|Translin-TRAX complex|Translin-TSNAX complex protein_complex taxon:9606 20190830 ComplexPortal
1558 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-900 saga _human GO:0002039 PMID:18250150 IPI F SAGA complex STAGA complex|SPT3-TAF9-GCN5 Acetyltransferase complex|Spt-Ada-Gcn5-acetyltrasferase complex|ATXN7:ATXN7L3:ENY2:KAT2A:SGF29:SUPT20H:SUPT3H:SUPT7L:TADA1:TADA2B:TADA3:TAF2:TAF5L:TAF6L:TAF8:TAF9:TAF10:TAF12:TRRAP:USP22 protein_complex taxon:9606 20180406 ComplexPortal
1571 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-903 tftc_human GO:0003684 PMID:11406595 IPI F TFTC histone acetylation complex ATXN7:ATXN7L3:ENY2:KAT2A:SUPT3H:TADA3:TAF2:TAF4:TAF5:TAF5L:TAF6:TAF7:TAF9:TAF10:TAF12:TRRAP:USP22|TBP-free TAFII-containing complex|TBP-free TAF complex protein_complex taxon:9606 20180406 ComplexPortal
1578 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-91 myc-max_human GO:0070888 PMID:12553908 IPI F Transcriptional activator Myc-Max complex MAX:MYC protein_complex taxon:9606 20150629 ComplexPortal
1579 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-915 tfiid_human GO:0000977 PMID:23332750 IPI F General transcription factor complex TFIID TAF1:TAF2:TAF3:2xTAF4:2xTAF5:2xTAF6:TAF7:TAF8:2xTAF9:TAF10:TAF11:2xTAF12:TAF13:TBP|Transcription factor complex IID protein_complex taxon:9606 20161219 ComplexPortal
1581 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-915 tfiid_human GO:0001228 PMID:17884155 IPI F General transcription factor complex TFIID TAF1:TAF2:TAF3:2xTAF4:2xTAF5:2xTAF6:TAF7:TAF8:2xTAF9:TAF10:TAF11:2xTAF12:TAF13:TBP|Transcription factor complex IID protein_complex taxon:9606 20161219 ComplexPortal
1588 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-915 tfiid_human GO:0035064 PMID:17884155 IPI F General transcription factor complex TFIID TAF1:TAF2:TAF3:2xTAF4:2xTAF5:2xTAF6:TAF7:TAF8:2xTAF9:TAF10:TAF11:2xTAF12:TAF13:TBP|Transcription factor complex IID protein_complex taxon:9606 20161219 ComplexPortal
1590 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-915 tfiid_human GO:0051123 PMID:27007846 IPI P General transcription factor complex TFIID TAF1:TAF2:TAF3:2xTAF4:2xTAF5:2xTAF6:TAF7:TAF8:2xTAF9:TAF10:TAF11:2xTAF12:TAF13:TBP|Transcription factor complex IID protein_complex taxon:9606 20161219 ComplexPortal
1592 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-915 tfiid_human GO:0070577 PMID:8980232 IPI F General transcription factor complex TFIID TAF1:TAF2:TAF3:2xTAF4:2xTAF5:2xTAF6:TAF7:TAF8:2xTAF9:TAF10:TAF11:2xTAF12:TAF13:TBP|Transcription factor complex IID protein_complex taxon:9606 20161219 ComplexPortal
1593 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-92 galectin-1_human GO:0030246 PMID:15476813 IPI F Galectin-1 complex LGALS1 dimer|Beta-galactoside-binding lectin L-14-I complex|Lactose-binding lectin 1 complex protein_complex taxon:9606 20150629 ComplexPortal
1595 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-92 galectin-1_human GO:0043236 PMID:1386213 IPI F Galectin-1 complex LGALS1 dimer|Beta-galactoside-binding lectin L-14-I complex|Lactose-binding lectin 1 complex protein_complex taxon:9606 20150629 ComplexPortal
1601 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-922 mbd3/nurd_human GO:0042393 PMID:27098840 IPI F MBD3/NuRD nucleosome remodeling and deacetylase complex Mi-2/NuRD complex|nucleosome remodeling and deacetylase complex|Mi-2 complex|CHD3:CHD4:GATAD2A:GATAD2B:2xHDAC1:HDAC2:MBD3:2xMTA1:MTA2:MTA3:RBBP4:RBBP7 protein_complex taxon:9606 20170131 ComplexPortal
1603 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-930 tfiid-taf4bvariant_human GO:0001228 PMID:17884155 IPI F General transcription factor complex TFIID, TAF4B variant TAF1:TAF2:TAF3:2xTAF4B:2xTAF5:2xTAF6:TAF7:TAF8:2xTAF9:TAF10:TAF11:2xTAF12:TAF13:TBP|Transcription factor complex IID, variant TAF4B protein_complex taxon:9606 20170131 ComplexPortal
1608 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-930 tfiid-taf4bvariant_human GO:0035064 PMID:17884155 IPI F General transcription factor complex TFIID, TAF4B variant TAF1:TAF2:TAF3:2xTAF4B:2xTAF5:2xTAF6:TAF7:TAF8:2xTAF9:TAF10:TAF11:2xTAF12:TAF13:TBP|Transcription factor complex IID, variant TAF4B protein_complex taxon:9606 20170131 ComplexPortal
1611 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-930 tfiid-taf4bvariant_human GO:0070577 PMID:8980232 IPI F General transcription factor complex TFIID, TAF4B variant TAF1:TAF2:TAF3:2xTAF4B:2xTAF5:2xTAF6:TAF7:TAF8:2xTAF9:TAF10:TAF11:2xTAF12:TAF13:TBP|Transcription factor complex IID, variant TAF4B protein_complex taxon:9606 20170131 ComplexPortal
1612 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-95 galectin-2_human GO:0030395 PMID:8262940 IPI F Galectin-2 complex Beta-galactoside-binding lectin L-14-II|LGALS2 dimer|S-Lac lectin 2 protein_complex taxon:9606 20150629 ComplexPortal
1637 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-973 c3b_human GO:0001848 PMID:21205667 IPI F Complement C3b complex C3b dimer protein_complex taxon:9606 20170131 ComplexPortal
1643 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-974 srcap_human-1 GO:0042393 PMID:15647280 IPI F SRCAP histone exchanging complex ACTL6A:ACTR6:DMAP1:RUVBL1:RUVBL2:SRCAP:VPS72:YEATS4:ZNHIT1|SRCAP-containing complex|ACTL6A:ACTR6:DMAP1:RUVBL1:RUVBL2:SWI2/SNF2-related CBP activator protein:VPS72:YEATS4:ZNHIT1 complex protein_complex taxon:9606 20170131 ComplexPortal
1660 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-997 g-atac_human GO:0001047 PMID:19936620 IPI F GCN5-containing ATAC complex DR1:KAT14:KAT2A:MBIP:SGF29:TADA2A:TADA3:WDR5:YEATS2:ZZZ3|ADA2A-containing complex|Ada2/Gcn5/Ada3 transcription activator complex|KAT2A-containing ATAC complex|ATAC complex|G-ATAC complex|Ada two A containing complex protein_complex taxon:9606 20170313 ComplexPortal
1661 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-997 g-atac_human GO:0001085 PMID:22055187 IPI F GCN5-containing ATAC complex DR1:KAT14:KAT2A:MBIP:SGF29:TADA2A:TADA3:WDR5:YEATS2:ZZZ3|ADA2A-containing complex|Ada2/Gcn5/Ada3 transcription activator complex|KAT2A-containing ATAC complex|ATAC complex|G-ATAC complex|Ada two A containing complex protein_complex taxon:9606 20170313 ComplexPortal
1665 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-997 g-atac_human GO:0035326 PMID:22055187 IPI F GCN5-containing ATAC complex DR1:KAT14:KAT2A:MBIP:SGF29:TADA2A:TADA3:WDR5:YEATS2:ZZZ3|ADA2A-containing complex|Ada2/Gcn5/Ada3 transcription activator complex|KAT2A-containing ATAC complex|ATAC complex|G-ATAC complex|Ada two A containing complex protein_complex taxon:9606 20170313 ComplexPortal
#------------

Predictions

GO:0006259 DNA metabolic process AnnotationPropagation P GO:1990599 3' overhang single-stranded DNA endodeoxyribonuclease activity IMP
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:1990599 3' overhang single-stranded DNA endodeoxyribonuclease activity IMP
GO:0010950 positive regulation of endopeptidase activity AnnotationPropagation P GO:0061133 endopeptidase activator activity IDA
GO:0051726 regulation of cell cycle AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity IDA
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity IDA
GO:0010466 negative regulation of peptidase activity AnnotationPropagation P GO:0030414 peptidase inhibitor activity IDA
GO:0016311 dephosphorylation AnnotationPropagation P GO:0016791 phosphatase activity IDA
GO:0005623 cell AnnotationPropagation C GO:1905665 positive regulation of calcium ion import across plasma membrane IGI
GO:0051726 regulation of cell cycle AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity IDA
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity IDA
GO:0006915 apoptotic process AnnotationPropagation P GO:0008656 cysteine-type endopeptidase activator activity involved in apoptotic process IDA
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process AnnotationPropagation P GO:0008656 cysteine-type endopeptidase activator activity involved in apoptotic process IDA
GO:0051726 regulation of cell cycle AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity IDA
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity IDA
GO:0010950 positive regulation of endopeptidase activity AnnotationPropagation P GO:0061133 endopeptidase activator activity IDA
GO:0010950 positive regulation of endopeptidase activity AnnotationPropagation P GO:0061133 endopeptidase activator activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0008233 peptidase activity IDA
GO:0051170 import into nucleus AnnotationPropagation P GO:0061608 nuclear import signal receptor activity IDA
GO:0043984 histone H4-K16 acetylation AnnotationPropagation P GO:0046972 histone acetyltransferase activity (H4-K16 specific) IDA
GO:0005623 cell AnnotationPropagation C GO:0051209 release of sequestered calcium ion into cytosol IDA
GO:0051170 import into nucleus AnnotationPropagation P GO:0061608 nuclear import signal receptor activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0008233 peptidase activity IDA
GO:0006508 proteolysis AnnotationPropagation P GO:0004198 calcium-dependent cysteine-type endopeptidase activity IDA
GO:0000122 negative regulation of transcription by RNA polymerase II AnnotationPropagation P GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific IDA
GO:0010950 positive regulation of endopeptidase activity AnnotationPropagation P GO:0061133 endopeptidase activator activity IDA
GO:0051726 regulation of cell cycle AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity IDA
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity IDA
GO:0006479 protein methylation AnnotationPropagation P GO:0008276 protein methyltransferase activity IDA
GO:0005739 mitochondrion AnnotationPropagation C GO:1901029 negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway IDA
GO:1904356 regulation of telomere maintenance via telomere lengthening FoldBasedPredictor GO:0098505 G-rich strand telomeric DNA binding part_of GO:0051974 negative regulation of telomerase activity part_of GO:1904356 regulation of telomere maintenance via telomere lengthening IDA
GO:0051974 negative regulation of telomerase activity FoldBasedPredictor GO:0098505 G-rich strand telomeric DNA binding part_of GO:0051974 negative regulation of telomerase activity part_of GO:1904356 regulation of telomere maintenance via telomere lengthening IDA
GO:1905581 positive regulation of low-density lipoprotein particle clearance FoldBasedPredictor GO:1905602 positive regulation of receptor-mediated endocytosis involved in cholesterol transport has_input GO:0034362 low-density lipoprotein particle part_of GO:0001921 positive regulation of receptor recycling part_of GO:0032385 positive regulation of intracellular cholesterol transport part_of GO:1905581 positive regulation of low-density lipoprotein particle clearance part_of GO:1905597 positive regulation of low-density lipoprotein particle receptor binding part_of GO:1905599 positive regulation of low-density lipoprotein receptor activity part_of GO:1905602 positive regulation of receptor-mediated endocytosis involved in cholesterol transport IDA
GO:1905599 positive regulation of low-density lipoprotein receptor activity FoldBasedPredictor GO:1905602 positive regulation of receptor-mediated endocytosis involved in cholesterol transport has_input GO:0034362 low-density lipoprotein particle part_of GO:0001921 positive regulation of receptor recycling part_of GO:0032385 positive regulation of intracellular cholesterol transport part_of GO:1905581 positive regulation of low-density lipoprotein particle clearance part_of GO:1905597 positive regulation of low-density lipoprotein particle receptor binding part_of GO:1905599 positive regulation of low-density lipoprotein receptor activity part_of GO:1905602 positive regulation of receptor-mediated endocytosis involved in cholesterol transport IDA
GO:1905597 positive regulation of low-density lipoprotein particle receptor binding FoldBasedPredictor GO:1905602 positive regulation of receptor-mediated endocytosis involved in cholesterol transport has_input GO:0034362 low-density lipoprotein particle part_of GO:0001921 positive regulation of receptor recycling part_of GO:0032385 positive regulation of intracellular cholesterol transport part_of GO:1905581 positive regulation of low-density lipoprotein particle clearance part_of GO:1905597 positive regulation of low-density lipoprotein particle receptor binding part_of GO:1905599 positive regulation of low-density lipoprotein receptor activity part_of GO:1905602 positive regulation of receptor-mediated endocytosis involved in cholesterol transport IDA
GO:0001921 positive regulation of receptor recycling FoldBasedPredictor GO:1905602 positive regulation of receptor-mediated endocytosis involved in cholesterol transport has_input GO:0034362 low-density lipoprotein particle part_of GO:0001921 positive regulation of receptor recycling part_of GO:0032385 positive regulation of intracellular cholesterol transport part_of GO:1905581 positive regulation of low-density lipoprotein particle clearance part_of GO:1905597 positive regulation of low-density lipoprotein particle receptor binding part_of GO:1905599 positive regulation of low-density lipoprotein receptor activity part_of GO:1905602 positive regulation of receptor-mediated endocytosis involved in cholesterol transport IDA
GO:0006303 double-strand break repair via nonhomologous end joining FoldBasedPredictor GO:1990599 3' overhang single-stranded DNA endodeoxyribonuclease activity occurs_at GO:0000784 nuclear chromosome, telomeric region part_of GO:0006303 double-strand break repair via nonhomologous end joining IMP
GO:0007596 blood coagulation FoldBasedPredictor GO:0016485 protein processing has_input UniProtKB:P00742 occurs_in CL:0002618 endothelial cell of umbilical vein part_of GO:0007596 blood coagulation IDA
GO:0033554 cellular response to stress FoldBasedPredictor GO:2000363 positive regulation of prostaglandin-E synthase activity has_output CHEBI:15551 prostaglandin E2 occurs_in CL:0000540 neuron occurs_in UBERON:0001891 midbrain part_of GO:0033554 cellular response to stress regulates_o_occurs_in CL:0000243 glial cell (sensu Vertebrata) ISS

Predictions (experimental)