Table of contents

Summary

GAF summary

Found 1373 annotations in 1388 lines.

GAF Validation Summary

No errors, warnings, or recommendations to report.

Used Ontology Summary

go/extensions/go-gaf

GAF Prediction Summary

Found 23 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf

Report

Group: goa - Dataset: goa_human_complex

SUMMARY

This report generated on 2018-10-19

Contents

gorule-0000008

gorule-0000018

gorule-0000020

gorule-0000027

other

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000018

IPI annotations require a With/From entry

Messages

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

gorule-0000027

Each identifier in GAF is valid

Messages

other

OWLTools check

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #1373 annotations in 1388 lines
#------------
# No errors, warnings, or recommendations to report.

Predictions

GO:0051170 import into nucleus AnnotationPropagation P GO:0061608 nuclear import signal receptor activity IDA
GO:0005623 cell AnnotationPropagation C GO:0051209 release of sequestered calcium ion into cytosol IDA
GO:0051726 regulation of cell cycle AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity IDA
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity IDA
GO:0051726 regulation of cell cycle AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity IDA
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity IDA
GO:0005623 cell AnnotationPropagation C GO:1905665 positive regulation of calcium ion import across plasma membrane IGI
GO:0010466 negative regulation of peptidase activity AnnotationPropagation P GO:0030414 peptidase inhibitor activity IDA
GO:0051170 import into nucleus AnnotationPropagation P GO:0061608 nuclear import signal receptor activity IDA
GO:0043984 histone H4-K16 acetylation AnnotationPropagation P GO:0046972 histone acetyltransferase activity (H4-K16 specific) IDA
GO:0016311 dephosphorylation AnnotationPropagation P GO:0016791 phosphatase activity IDA
GO:0006479 protein methylation AnnotationPropagation P GO:0008276 protein methyltransferase activity IDA
GO:0005739 mitochondrion AnnotationPropagation C GO:1901029 negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway IDA
GO:0051726 regulation of cell cycle AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity IDA
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity IDA
GO:0051726 regulation of cell cycle AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity IDA
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity IDA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:1990599 3' overhang single-stranded DNA endodeoxyribonuclease activity IMP
GO:0090305 nucleic acid phosphodiester bond hydrolysis AnnotationPropagation P GO:1990599 3' overhang single-stranded DNA endodeoxyribonuclease activity IMP
GO:0033554 cellular response to stress FoldBasedPredictor GO:2000363 positive regulation of prostaglandin-E synthase activity has_output CHEBI:15551 occurs_in CL:0000540 neuron occurs_in UBERON:0001891 midbrain part_of GO:0033554 cellular response to stress regulates_o_occurs_in CL:0000243 glial cell (sensu Vertebrata) ISS
GO:0006303 double-strand break repair via nonhomologous end joining FoldBasedPredictor GO:1990599 3' overhang single-stranded DNA endodeoxyribonuclease activity occurs_at GO:0000784 nuclear chromosome, telomeric region part_of GO:0006303 double-strand break repair via nonhomologous end joining IMP
GO:0007596 blood coagulation FoldBasedPredictor GO:0016485 protein processing has_direct_input UniProtKB:P00742 occurs_in CL:0002618 endothelial cell of umbilical vein part_of GO:0007596 blood coagulation IDA
GO:0097458 neuron part FoldBasedPredictor GO:0098978 glutamatergic synapse part_of CL:0002608 hippocampal neuron IDA

Predictions (experimental)