Table of contents

Report

Group: goa - Dataset: goa_cow_isoform

SUMMARY

This report generated on 2020-06-05

Header From Original Association File

!gaf-version: 2.1
!
!The set of protein accessions included in this file is based on UniProt complete proteomes, which may provide more than one protein per gene.
!They include all Swiss-Prot entries for the species plus any TrEMBL entries that have an Ensembl DR line. The TrEMBL entries are likely to overlap with the Swiss-Prot entries or their isoforms.
!If a particular protein accession is not annotated with GO, then it will not appear in this file.
!
!Note that the annotation set in this file is filtered in order to reduce redundancy; the full, unfiltered set can be found in
!ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gaf.gz
!
!Generated: 2020-04-22 08:53
!GO-version: http://purl.obolibrary.org/obo/go/releases/2020-04-18/extensions/go-plus.owl
!

Contents

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MESSAGES

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No 'NOT' annotations to 'protein binding ; GO:0005515'

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IEP and HEP usage is restricted to terms from the Biological Process ontology

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IPI should not be used with GO:0003824 catalytic activity or descendents

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No annotations should be made to uninformative high level terms

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ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

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Taxon-appropriate annotation check

Messages

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Dual species taxon check

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With/From: IC annotations require a With/From GO ID

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IDA annotations must not have a With/From entry

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IPI annotations require a With/From entry

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Automatic repair of annotations to merged or obsoleted terms

Messages

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Aspect can only be one of C, P, F and should be repaired using the GO term

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IEAs should be less than one year old.

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Deprecated GO_REFs are not allowed

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IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

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Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

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Qualifier: IKR evidence code requires a NOT qualifier

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Check for valid combination of evidence code and GO_REF

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The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

Messages

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Annotations to ISS, ISA and ISO should not be self-referential

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Group specific filter rules should be applied to annotations

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Object extensions should conform to the extensions-patterns.yaml file in metadata

other

Predictions

GO:0005737 cytoplasm AnnotationPropagation C GO:0030970 retrograde protein transport, ER to cytosol ISS
GO:0016020 membrane AnnotationPropagation C GO:0032596 protein transport into membrane raft IMP
GO:0120009 intermembrane lipid transfer AnnotationPropagation P GO:0120020 cholesterol transfer activity ISS
GO:0015918 sterol transport AnnotationPropagation P GO:0120020 cholesterol transfer activity ISS
GO:0045121 membrane raft FoldBasedPredictor GO:0051117 ATPase binding occurs_in CL:0000019 sperm occurs_in GO:0045121 membrane raft IPI
GO:0015813 L-glutamate transmembrane transport FoldBasedPredictor GO:0150104 transport across blood-brain barrier has_target_end_location GO:0016324 apical plasma membrane has_target_start_location GO:0009925 basal plasma membrane part_of GO:0015813 L-glutamate transmembrane transport IGI
GO:0070778 L-aspartate transmembrane transport FoldBasedPredictor GO:0150104 transport across blood-brain barrier has_target_end_location GO:0016324 apical plasma membrane has_target_start_location GO:0009925 basal plasma membrane part_of GO:0070778 L-aspartate transmembrane transport IGI
GO:0070778 L-aspartate transmembrane transport FoldBasedPredictor GO:0150104 transport across blood-brain barrier has_target_end_location GO:0016324 apical plasma membrane has_target_start_location GO:0009925 basal plasma membrane part_of GO:0070778 L-aspartate transmembrane transport IGI
GO:0015813 L-glutamate transmembrane transport FoldBasedPredictor GO:0150104 transport across blood-brain barrier has_target_end_location GO:0016324 apical plasma membrane has_target_start_location GO:0009925 basal plasma membrane part_of GO:0015813 L-glutamate transmembrane transport IGI
GO:0015813 L-glutamate transmembrane transport FoldBasedPredictor GO:0150104 transport across blood-brain barrier has_target_end_location GO:0016324 apical plasma membrane has_target_start_location GO:0009925 basal plasma membrane part_of GO:0015813 L-glutamate transmembrane transport IGI
GO:0070778 L-aspartate transmembrane transport FoldBasedPredictor GO:0150104 transport across blood-brain barrier has_target_end_location GO:0016324 apical plasma membrane has_target_start_location GO:0009925 basal plasma membrane part_of GO:0070778 L-aspartate transmembrane transport IGI
GO:0070778 L-aspartate transmembrane transport FoldBasedPredictor GO:0150104 transport across blood-brain barrier has_target_end_location GO:0016324 apical plasma membrane has_target_start_location GO:0009925 basal plasma membrane part_of GO:0070778 L-aspartate transmembrane transport IGI
GO:0015813 L-glutamate transmembrane transport FoldBasedPredictor GO:0150104 transport across blood-brain barrier has_target_end_location GO:0016324 apical plasma membrane has_target_start_location GO:0009925 basal plasma membrane part_of GO:0015813 L-glutamate transmembrane transport IGI

Predictions (experimental)