Table of contents

Summary

GAF summary

Found 12 annotations in 27 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000018 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000018) IPI annotations require a With/From entry, there are 3 violations with type Warning.

GAF Prediction Summary

Found 2 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf    go/releases/2019-11-16/extensions/go-gaf.owl

Report

Group: goa - Dataset: goa_cow_complex

SUMMARY

This report generated on 2019-11-18

Header From Original Association File

!gaf-version: 2.1
!
!Note that the annotation set in this file is filtered in order to reduce redundancy; the full, unfiltered set can be found in
!ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gaf.gz
!
!Generated: 2019-11-11 16:03
!GO-version: http://purl.obolibrary.org/obo/go/releases/2019-11-09/extensions/go-plus.owl
!

Contents

gorule-0000002

gorule-0000006

gorule-0000007

gorule-0000008

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

gorule-0000017

gorule-0000018

gorule-0000028

gorule-0000029

gorule-0000030

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

gorule-0000050

other

MESSAGES

gorule-0000002

No 'NOT' annotations to 'protein binding ; GO:0005515'

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

gorule-0000007

IPI should not be used with catalytic activity molecular function terms

gorule-0000008

No annotations should be made to uninformative high level terms

gorule-0000011

ND annotations to root nodes only; and only root nodes can have the evidence code ND.

gorule-0000013

Taxon-appropriate annotation check

gorule-0000015

Dual species taxon check

gorule-0000016

With/From: IC annotations require a With/From GO ID

gorule-0000017

IDA annotations must not have a With/From entry

gorule-0000018

IPI annotations require a With/From entry

Messages

gorule-0000028

Aspect can only be one of C, P, F and should be repaired using the GO term

gorule-0000029

All IEAs over a year old are removed

gorule-0000030

Deprecated GO_REFs are not allowed

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

gorule-0000043

Check for valid combination of evidence code and GO_REF

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

other

OWLTools check

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #12 annotations in 27 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000018 IPI annotations require a With/From entry Warning count: 3
18 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1035 tenascin-x_bovin GO:0008201 PMID:11278641 IPI F Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal
24 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1035 tenascin-x_bovin GO:0098639 PMID:17078949 IPI F Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal
25 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1035 tenascin-x_bovin GO:0098640 PMID:10469149 IPI F Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal
#------------

Predictions

GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0004096 catalase activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity IDA

Predictions (experimental)