#Line number RuleID ViolationType Message Line #------------ # GAF Parser ERROR count: 44 17 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-1035 tenascin-x_bovin enables GO:0005201 PMID:10469149 NAS F Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal 18 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-1035 tenascin-x_bovin enables GO:0008201 PMID:11278641 IPI F Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal 19 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-1035 tenascin-x_bovin enables GO:0098639 PMID:17078949 IPI F Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal 20 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-1035 tenascin-x_bovin enables GO:0098640 PMID:10469149 IPI F Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal 21 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-1035 tenascin-x_bovin involved_in GO:0007160 GO_REF:0000108 IEA GO:0098639 P Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20240409 GOC 22 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-1035 tenascin-x_bovin involved_in GO:0007160 GO_REF:0000108 IEA GO:0098640 P Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20240409 GOC 23 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-1035 tenascin-x_bovin involved_in GO:0008284 GO_REF:0000114 ISO ComplexPortal:CPX-1034 P Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal 24 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-1035 tenascin-x_bovin involved_in GO:0010718 PMID:24821840 IDA P Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal 25 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-1035 tenascin-x_bovin involved_in GO:0030155 PMID:10469149 IDA P Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal 26 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-1035 tenascin-x_bovin involved_in GO:0030334 PMID:24821840 IDA P Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal 27 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-1035 tenascin-x_bovin involved_in GO:0030511 PMID:24821840 IDA P Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal 28 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-1035 tenascin-x_bovin involved_in GO:0045595 PMID:25793578 NAS P Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal 29 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-1035 tenascin-x_bovin involved_in GO:1900748 GO_REF:0000114 ISO ComplexPortal:CPX-1034 P Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal 30 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-1035 tenascin-x_bovin involved_in GO:1904028 GO_REF:0000114 ISO ComplexPortal:CPX-1014 P Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal 31 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-1035 tenascin-x_bovin involved_in GO:1905935 PMID:25793578 NAS P Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal 32 PARSER ERROR Unknown qualifier: located_in ComplexPortal CPX-1035 tenascin-x_bovin located_in GO:0062023 PMID:25793578 NAS C Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal 33 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-2169 ggtase-1_bovin enables GO:0004662 PMID:7651144 IDA F Protein geranylgeranyl transferase type I complex GGTase-I complex|GGTaseI complex|geranylgeranyl-diphosphate:protein-cysteine geranyltransferase|FNTA-PGGT1B complex|FNTA-PGGT1B heterodimer|FNTA:PGGT1B|Type 1 protein geranylgeranyl transferase complex|Type I protein geranylgeranyl transferase complex|PGGTase-I complex protein_complex taxon:9913 20231127 ComplexPortal 34 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-2169 ggtase-1_bovin enables GO:0008270 PMID:7651144 IDA F Protein geranylgeranyl transferase type I complex GGTase-I complex|GGTaseI complex|geranylgeranyl-diphosphate:protein-cysteine geranyltransferase|FNTA-PGGT1B complex|FNTA-PGGT1B heterodimer|FNTA:PGGT1B|Type 1 protein geranylgeranyl transferase complex|Type I protein geranylgeranyl transferase complex|PGGTase-I complex protein_complex taxon:9913 20231127 ComplexPortal 35 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-3108 collagen_xi_bovin enables GO:0005201 PMID:17876790 NAS F Collagen type XI trimer variant 1 Type XI collagen variant 1|COL2A1:COL11A1:COL11A2 protein_complex taxon:9913 20141016 ComplexPortal 36 PARSER ERROR Unknown qualifier: located_in ComplexPortal CPX-3108 collagen_xi_bovin located_in GO:0062023 PMID:17876790 NAS C Collagen type XI trimer variant 1 Type XI collagen variant 1|COL2A1:COL11A1:COL11A2 protein_complex taxon:9913 20141016 ComplexPortal 37 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-3193 cav1.2-alpha-2/delta-1-beta2_bovin enables GO:0005245 GO_REF:0000114 ISS ComplexPortal:CPX-8861 F Cav1.2 voltage-gated calcium channel complex, CACNA2D1-CACNB2 variant Calcium channel, L type, cardiac muscle complex|CACNA1C:CACNA2D1:CACNB2|Cardiac muscle dihydropyridin receptor complex|Cardiac muscle voltage-gated calcium channel complex protein_complex taxon:9913 20240116 ComplexPortal 38 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-3193 cav1.2-alpha-2/delta-1-beta2_bovin enables GO:0005509 GO_REF:0000114 ISS ComplexPortal:CPX-8861 F Cav1.2 voltage-gated calcium channel complex, CACNA2D1-CACNB2 variant Calcium channel, L type, cardiac muscle complex|CACNA1C:CACNA2D1:CACNB2|Cardiac muscle dihydropyridin receptor complex|Cardiac muscle voltage-gated calcium channel complex protein_complex taxon:9913 20240116 ComplexPortal 39 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-3193 cav1.2-alpha-2/delta-1-beta2_bovin involved_in GO:0045933 PMID:34072954 NAS P Cav1.2 voltage-gated calcium channel complex, CACNA2D1-CACNB2 variant Calcium channel, L type, cardiac muscle complex|CACNA1C:CACNA2D1:CACNB2|Cardiac muscle dihydropyridin receptor complex|Cardiac muscle voltage-gated calcium channel complex protein_complex taxon:9913 20240116 ComplexPortal 40 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-3193 cav1.2-alpha-2/delta-1-beta2_bovin involved_in GO:0070588 GO_REF:0000114 ISS ComplexPortal:CPX-8861 P Cav1.2 voltage-gated calcium channel complex, CACNA2D1-CACNB2 variant Calcium channel, L type, cardiac muscle complex|CACNA1C:CACNA2D1:CACNB2|Cardiac muscle dihydropyridin receptor complex|Cardiac muscle voltage-gated calcium channel complex protein_complex taxon:9913 20240116 ComplexPortal 41 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-3275 kcnj3-kcnj5_bovin enables GO:0015467 PMID:19703462 NAS F I(KACh) inward rectifier potassium channel complex muscarinic potassium channel complex|GIRK1-GIRK4 G protein-coupled atrial inward rectifier potassium channel complex|Kir3.1-Kir3.4 G protein-coupled atrial inward rectifier potassium channel complex|KCNJ3:KCNJ5 protein_complex taxon:9913 20150212 ComplexPortal 42 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-3275 kcnj3-kcnj5_bovin involved_in GO:0071805 PMID:19703462 NAS P I(KACh) inward rectifier potassium channel complex muscarinic potassium channel complex|GIRK1-GIRK4 G protein-coupled atrial inward rectifier potassium channel complex|Kir3.1-Kir3.4 G protein-coupled atrial inward rectifier potassium channel complex|KCNJ3:KCNJ5 protein_complex taxon:9913 20150212 ComplexPortal 43 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-3300 collagen_v_bovin-1 enables GO:0005201 PMID:37158802 NAS F Collagen type V trimer variant 1 Type V collagen variant 1|2xCOL5A1:COL5A2 protein_complex taxon:9913 20230511 ComplexPortal 44 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-3300 collagen_v_bovin-1 involved_in GO:0030199 PMID:37158802 NAS P Collagen type V trimer variant 1 Type V collagen variant 1|2xCOL5A1:COL5A2 protein_complex taxon:9913 20230511 ComplexPortal 45 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-4521 matrilin1_bovin enables GO:0005201 PMID:10397755 NAS F Matrilin-1 complex MATN1 trimer|Matrilin-1 homotrimer|Cartilage matrix protein complex protein_complex taxon:9913 20190830 ComplexPortal 46 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-4521 matrilin1_bovin enables GO:0005509 PMID:15075323 NAS F Matrilin-1 complex MATN1 trimer|Matrilin-1 homotrimer|Cartilage matrix protein complex protein_complex taxon:9913 20190830 ComplexPortal 47 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-4521 matrilin1_bovin involved_in GO:0030198 PMID:10397755 NAS P Matrilin-1 complex MATN1 trimer|Matrilin-1 homotrimer|Cartilage matrix protein complex protein_complex taxon:9913 20190830 ComplexPortal 48 PARSER ERROR Unknown qualifier: located_in ComplexPortal CPX-4521 matrilin1_bovin located_in GO:0062023 PMID:1600245 NAS C Matrilin-1 complex MATN1 trimer|Matrilin-1 homotrimer|Cartilage matrix protein complex protein_complex taxon:9913 20190830 ComplexPortal 49 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-4522 matrilin3_bovin enables GO:0005201 GO_REF:0000114 ISO ComplexPortal:CPX-4501 F Matrilin-3 complex MATN3 tetramer|Matrilin-3 homotetramer protein_complex taxon:9913 20190830 ComplexPortal 50 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-4522 matrilin3_bovin enables GO:0005509 PMID:15075323 NAS F Matrilin-3 complex MATN3 tetramer|Matrilin-3 homotetramer protein_complex taxon:9913 20190830 ComplexPortal 51 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-4522 matrilin3_bovin involved_in GO:0030198 GO_REF:0000114 ISO ComplexPortal:CPX-4501 P Matrilin-3 complex MATN3 tetramer|Matrilin-3 homotetramer protein_complex taxon:9913 20190830 ComplexPortal 52 PARSER ERROR Unknown qualifier: located_in ComplexPortal CPX-4522 matrilin3_bovin located_in GO:0062023 GO_REF:0000114 ISO ComplexPortal:CPX-4501 C Matrilin-3 complex MATN3 tetramer|Matrilin-3 homotetramer protein_complex taxon:9913 20190830 ComplexPortal 53 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-4523 matn1-matn3_bovin enables GO:0005201 PMID:10660556 NAS F Matrilin-1 - Matrilin-3 complex MATN1:MATN3|Matrilin-1 - Matrilin-3 oligomer protein_complex taxon:9913 20190830 ComplexPortal 54 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-4523 matn1-matn3_bovin enables GO:0005509 PMID:15075323 NAS F Matrilin-1 - Matrilin-3 complex MATN1:MATN3|Matrilin-1 - Matrilin-3 oligomer protein_complex taxon:9913 20190830 ComplexPortal 55 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-4523 matn1-matn3_bovin involved_in GO:0030198 PMID:10660556 NAS P Matrilin-1 - Matrilin-3 complex MATN1:MATN3|Matrilin-1 - Matrilin-3 oligomer protein_complex taxon:9913 20190830 ComplexPortal 56 PARSER ERROR Unknown qualifier: located_in ComplexPortal CPX-4523 matn1-matn3_bovin located_in GO:0062023 PMID:10660556 NAS C Matrilin-1 - Matrilin-3 complex MATN1:MATN3|Matrilin-1 - Matrilin-3 oligomer protein_complex taxon:9913 20190830 ComplexPortal 57 PARSER ERROR Unknown qualifier: enables ComplexPortal CPX-4768 cat_bovin enables GO:0004096 PMID:11742121 IDA F Catalase complex CAT tetramer protein_complex taxon:9913 20191003 ComplexPortal 58 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-4768 cat_bovin involved_in GO:0042744 GO_REF:0000114 ISO ComplexPortal:CPX-4742 P Catalase complex CAT tetramer protein_complex taxon:9913 20191003 ComplexPortal 59 PARSER ERROR Unknown qualifier: involved_in ComplexPortal CPX-4768 cat_bovin involved_in GO:0061692 GO_REF:0000114 ISO ComplexPortal:CPX-4742 P Catalase complex CAT tetramer protein_complex taxon:9913 20191003 ComplexPortal 60 PARSER ERROR Unknown qualifier: located_in ComplexPortal CPX-4768 cat_bovin located_in GO:0005777 GO_REF:0000114 ISO ComplexPortal:CPX-4742 C Catalase complex CAT tetramer protein_complex taxon:9913 20191003 ComplexPortal #------------ # GAF Parser WARNING count: 0 #------------ #------------ # Validation for #44 annotations in 60 lines #------------ #Line number RuleID ViolationType Message Line #------------ # GO_AR:0000018 IPI annotations require a With/From entry Warning count: 3 18 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1035 tenascin-x_bovin enables GO:0008201 PMID:11278641 IPI F Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal 19 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1035 tenascin-x_bovin enables GO:0098639 PMID:17078949 IPI F Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal 20 GO_AR:0000018 Warning IPI annotations require a With/From entry ComplexPortal CPX-1035 tenascin-x_bovin enables GO:0098640 PMID:10469149 IPI F Tenascin-X complex TNXB trimer|Tenascin X complex|TNX complex|TN-X complex|Flexilin complex protein_complex taxon:9913 20170313 ComplexPortal #------------