Table of contents

Report

Group: goa - Dataset: goa_cow

SUMMARY

This report generated on 2020-07-03

Header From Original Association File

!gaf-version: 2.1
!
!The set of protein accessions included in this file is based on UniProt reference proteomes, which provide one protein per gene.
!They include the protein sequences annotated in Swiss-Prot or the longest TrEMBL transcript if there is no Swiss-Prot record.
!If a particular protein accession is not annotated with GO, then it will not appear in this file.
!
!Note that the annotation set in this file is filtered in order to reduce redundancy; the full, unfiltered set can be found in
!ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gz
!
!Generated: 2020-06-16 09:00
!GO-version: http://purl.obolibrary.org/obo/go/releases/2020-06-12/extensions/go-plus.owl
!

Contents

gorule-0000002

gorule-0000006

gorule-0000007

gorule-0000008

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

gorule-0000017

gorule-0000018

gorule-0000028

gorule-0000029

gorule-0000030

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

gorule-0000050

gorule-0000057

gorule-0000058

other

MESSAGES

gorule-0000002

No 'NOT' annotations to 'protein binding ; GO:0005515'

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

gorule-0000013

Taxon-appropriate annotation check

Messages

gorule-0000015

Dual species taxon check

Messages

gorule-0000016

With/From: IC annotations require a With/From GO ID

gorule-0000017

IDA annotations must not have a With/From entry

gorule-0000018

IPI annotations require a With/From entry

gorule-0000028

Aspect can only be one of C, P, F and should be repaired using the GO term

gorule-0000029

IEAs should be less than one year old.

gorule-0000030

Deprecated GO_REFs are not allowed

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

gorule-0000043

Check for valid combination of evidence code and GO_REF

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

Messages

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

gorule-0000057

Group specific filter rules should be applied to annotations

gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

other

Predictions

GO:0005739 mitochondrion AnnotationPropagation C GO:1902445 regulation of mitochondrial membrane permeability involved in programmed necrotic cell death ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033617 mitochondrial cytochrome c oxidase assembly ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0036459 thiol-dependent ubiquitinyl hydrolase activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0006479 protein methylation AnnotationPropagation P GO:0071885 N-terminal protein N-methyltransferase activity ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0070573 metallodipeptidase activity ISS
GO:0016311 dephosphorylation AnnotationPropagation P GO:0052834 inositol monophosphate phosphatase activity IDA
GO:0006470 protein dephosphorylation AnnotationPropagation P GO:0101006 protein histidine phosphatase activity IDA
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0070330 aromatase activity ISS
GO:0016020 membrane AnnotationPropagation C GO:1903445 protein transport from ciliary membrane to plasma membrane ISS
GO:0016020 membrane AnnotationPropagation C GO:0090110 COPII-coated vesicle cargo loading ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0045202 synapse AnnotationPropagation C GO:0098976 excitatory chemical synaptic transmission ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0042407 cristae formation ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0070124 mitochondrial translational initiation ISS
GO:0006412 translation AnnotationPropagation P GO:0008079 translation termination factor activity ISS
GO:0006415 translational termination AnnotationPropagation P GO:0008079 translation termination factor activity ISS
GO:0006417 regulation of translation AnnotationPropagation P GO:0008079 translation termination factor activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0007186 G protein-coupled receptor signaling pathway AnnotationPropagation P GO:0070915 lysophosphatidic acid receptor activity ISS
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0050254 rhodopsin kinase activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0097345 mitochondrial outer membrane permeabilization ISS
GO:0016311 dephosphorylation AnnotationPropagation P GO:0043874 acireductone synthase activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0051560 mitochondrial calcium ion homeostasis ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0005739 mitochondrion AnnotationPropagation C GO:1901029 negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway ISS
GO:0016311 dephosphorylation AnnotationPropagation P GO:0106235 ceramide-1-phosphate phosphatase activity ISS
GO:0010452 histone H3-K36 methylation AnnotationPropagation P GO:0046975 histone methyltransferase activity (H3-K36 specific) ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033617 mitochondrial cytochrome c oxidase assembly ISS
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0061630 ubiquitin protein ligase activity ISS
GO:0016020 membrane AnnotationPropagation C GO:1903445 protein transport from ciliary membrane to plasma membrane ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0070126 mitochondrial translational termination ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0097345 mitochondrial outer membrane permeabilization ISS
GO:0016310 phosphorylation AnnotationPropagation P GO:0051736 ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0090615 mitochondrial mRNA processing ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0102758 very-long-chain enoyl-CoA reductase activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0070901 mitochondrial tRNA methylation ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0006508 proteolysis AnnotationPropagation P GO:0070006 metalloaminopeptidase activity ISS
GO:0016311 dephosphorylation AnnotationPropagation P GO:0098519 nucleotide phosphatase activity, acting on free nucleotides ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:1901029 negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0035513 oxidative RNA demethylation AnnotationPropagation P GO:1990931 RNA N6-methyladenosine dioxygenase activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0033615 mitochondrial proton-transporting ATP synthase complex assembly ISS
GO:0005829 cytosol AnnotationPropagation C GO:0045022 early endosome to late endosome transport ISS
GO:0045202 synapse AnnotationPropagation C GO:0060084 synaptic transmission involved in micturition ISS
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0043139 5'-3' DNA helicase activity ISS
GO:0055114 oxidation-reduction process AnnotationPropagation P GO:0070815 peptidyl-lysine 5-dioxygenase activity ISS
GO:0007165 signal transduction AnnotationPropagation P GO:0005179 hormone activity IMP
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0016567 protein ubiquitination AnnotationPropagation P GO:0061630 ubiquitin protein ligase activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0097345 mitochondrial outer membrane permeabilization ISS
GO:0016020 membrane AnnotationPropagation C GO:0090110 COPII-coated vesicle cargo loading ISS
GO:0005929 cilium AnnotationPropagation C GO:0042073 intraciliary transport ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0070124 mitochondrial translational initiation IDA
GO:0005739 mitochondrion AnnotationPropagation C GO:1901029 negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway ISS
GO:0006412 translation AnnotationPropagation P GO:0008135 translation factor activity, RNA binding ISS
GO:0006417 regulation of translation AnnotationPropagation P GO:0008135 translation factor activity, RNA binding ISS
GO:0035435 phosphate ion transmembrane transport AnnotationPropagation P GO:0061513 glucose 6-phosphate:inorganic phosphate antiporter activity ISS
GO:0015712 hexose phosphate transport AnnotationPropagation P GO:0061513 glucose 6-phosphate:inorganic phosphate antiporter activity ISS
GO:0015711 organic anion transport AnnotationPropagation P GO:0061513 glucose 6-phosphate:inorganic phosphate antiporter activity ISS
GO:0043085 positive regulation of catalytic activity AnnotationPropagation P GO:0060230 lipoprotein lipase activator activity NAS
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0033617 mitochondrial cytochrome c oxidase assembly ISS
GO:0007268 chemical synaptic transmission AnnotationPropagation P GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential IMP
GO:0034220 ion transmembrane transport AnnotationPropagation P GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential IMP
GO:0060078 regulation of postsynaptic membrane potential AnnotationPropagation P GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential IMP
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0016311 dephosphorylation AnnotationPropagation P GO:0098519 nucleotide phosphatase activity, acting on free nucleotides ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0016310 phosphorylation AnnotationPropagation P GO:0051731 polynucleotide 5'-hydroxyl-kinase activity ISS
GO:0016310 phosphorylation AnnotationPropagation P GO:0008887 glycerate kinase activity ISS
GO:0007268 chemical synaptic transmission AnnotationPropagation P GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential IMP
GO:0034220 ion transmembrane transport AnnotationPropagation P GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential IMP
GO:0060078 regulation of postsynaptic membrane potential AnnotationPropagation P GO:1904315 transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential IMP
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0098821 BMP receptor activity ISS
GO:0030509 BMP signaling pathway AnnotationPropagation P GO:0098821 BMP receptor activity ISS
GO:0051726 regulation of cell cycle AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity ISS
GO:0006468 protein phosphorylation AnnotationPropagation P GO:0097472 cyclin-dependent protein kinase activity ISS
GO:0010950 positive regulation of endopeptidase activity AnnotationPropagation P GO:0061133 endopeptidase activator activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0034553 mitochondrial respiratory chain complex II assembly ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0070145 mitochondrial asparaginyl-tRNA aminoacylation ISS
GO:0030974 thiamine pyrophosphate transmembrane transport AnnotationPropagation P GO:0090422 thiamine pyrophosphate transmembrane transporter activity ISS
GO:0035461 vitamin transmembrane transport AnnotationPropagation P GO:0090422 thiamine pyrophosphate transmembrane transporter activity ISS
GO:0006897 endocytosis AnnotationPropagation P GO:0070287 ferritin receptor activity ISS
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic AnnotationPropagation P GO:0090624 endoribonuclease activity, cleaving miRNA-paired mRNA ISS
GO:0035279 mRNA cleavage involved in gene silencing by miRNA AnnotationPropagation P GO:0090624 endoribonuclease activity, cleaving miRNA-paired mRNA ISS
GO:0016567 protein ubiquitination AnnotationPropagation P GO:1990756 ubiquitin ligase-substrate adaptor activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0005764 lysosome AnnotationPropagation C GO:1905146 lysosomal protein catabolic process ISS
GO:0035513 oxidative RNA demethylation AnnotationPropagation P GO:1990930 RNA N1-methyladenosine dioxygenase activity ISS
GO:0042572 retinol metabolic process AnnotationPropagation P GO:0050253 retinyl-palmitate esterase activity ISS
GO:0016020 membrane AnnotationPropagation C GO:0090110 COPII-coated vesicle cargo loading ISS
GO:0006508 proteolysis AnnotationPropagation P GO:0070006 metalloaminopeptidase activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0097745 mitochondrial tRNA 5'-end processing ISS
GO:0016020 membrane AnnotationPropagation C GO:0090110 COPII-coated vesicle cargo loading ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0033617 mitochondrial cytochrome c oxidase assembly ISS
GO:0019918 peptidyl-arginine methylation, to symmetrical-dimethyl arginine AnnotationPropagation P GO:0035243 protein-arginine omega-N symmetric methyltransferase activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:1902108 regulation of mitochondrial membrane permeability involved in apoptotic process ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0005739 mitochondrion AnnotationPropagation C GO:0032543 mitochondrial translation HDA
GO:0005737 cytoplasm AnnotationPropagation C GO:1990036 calcium ion import into sarcoplasmic reticulum ISS
GO:0016311 dephosphorylation AnnotationPropagation P GO:0097657 3',5'-nucleotide bisphosphate phosphatase activity ISS
GO:0005739 mitochondrion AnnotationPropagation C GO:1990180 mitochondrial tRNA 3'-end processing ISS

Predictions (experimental)