• Summary (original)
• Report (original)
• OWLTools check (original)
• Predictions (original)
• Predictions (experimental) (original)

GAF summary

Found 34775 annotations in 34794 lines.

GAF Validation Summary

No errors, warnings, or recommendations to report.

Used Ontology Summary

go/extensions/go-gaf

GAF Prediction Summary

Found 6 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf

Group: goa - Dataset: goa_chicken_isoform

SUMMARY

This report generated on 2018-12-17

• Associations: 34775
• Lines in file (incl headers): 34795
• Lines skipped: 20

Contents

gorule-0000008

gorule-0000020

other

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 4

Messages

• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) -- UniProtKB A0A1L1RL66 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:A0A1D5PFN2
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) -- UniProtKB A0A1L1RL66 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:E1BZ76
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) -- UniProtKB Q9YGL6 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:Q9YGL6-2
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) -- UniProtKB Q9YGL6 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:Q9YGL6-3

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 4

Messages

• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0004874) -- UniProtKB A0A1D5P3U2 AHR GO:0004874 PMID:21047992 IDA F Uncharacterized protein AHR protein taxon:9031 20150327 AgBase UniProtKB:F1NLX8
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0004874) -- UniProtKB A0A1D5P3U2 AHR GO:0004874 PMID:21134488 IDA F Uncharacterized protein AHR protein taxon:9031 20150327 AgBase UniProtKB:F1NLX8
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0004874) -- UniProtKB A0A1D5P3U2 AHR GO:0004874 PMID:9224771 IDA F Uncharacterized protein AHR protein taxon:9031 20150922 AgBase activated_by(CHEBI:34342),occurs_in(UBERON:0002113),occurs_in(UBERON:0002107) UniProtKB:F1NLX8
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0004874) -- UniProtKB A0A1D5P9S5 AHR1B GO:0004874 GO_REF:0000002 IEA InterPro:IPR033348 F Uncharacterized protein AHR1B protein taxon:9031 20181201 InterPro UniProtKB:F1NWS4

other

• total: 0

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #34775 annotations in 34794 lines
#------------
# No errors, warnings, or recommendations to report.

GO:0032259 methylation AnnotationPropagation P GO:0046539 histamine N-methyltransferase activity IDA
GO:0097458 neuron part FoldBasedPredictor GO:0045177 apical part of cell adjacent_to GO:0032421 stereocilium bundle part_of CL:0000202 auditory hair cell part_of UBERON:0001844 cochlea IDA
GO:0097223 sperm part FoldBasedPredictor GO:0005623 cell part_of CL:0000019 sperm IDA
GO:0008144 drug binding FoldBasedPredictor GO:1990239 steroid hormone binding has_direct_input CHEBI:17026 progesterone occurs_in UBERON:0000993 oviduct ISS
GO:0040012 regulation of locomotion FoldBasedPredictor GO:1990869 cellular response to chemokine happens_during GO:0048568 embryonic organ development has_end_location UBERON:0014783 cloacal muscle has_start_location UBERON:0002103 hindlimb regulates_o_results_in_movement_of CL:0000680 muscle precursor cell results_in_development_of UBERON:0014783 cloacal muscle IMP
GO:0005829 cytosol FoldBasedPredictor GO:0051219 phosphoprotein binding occurs_in GO:0005829 cytosol occurs_in UBERON:0000993 oviduct IPI