• Summary (original)
• Report (original)
• OWLTools check (original)
• Predictions (original)
• Predictions (experimental) (original)

GAF summary

Found 16552 annotations in 16571 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000014 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000014) Valid GO term ID, there are 5 violations with type Error.

GAF Prediction Summary

Found 9 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf

Group: goa - Dataset: goa_chicken_isoform

SUMMARY

This report generated on 2019-04-22

• Associations: 16552
• Lines in file (incl headers): 22362
• Lines skipped: 5798

Header From Original Association File

!gaf-version: 2.1
!
!The set of protein accessions included in this file is based on UniProt complete proteomes, which may provide more than one protein per gene.
!They include all Swiss-Prot entries for the species plus any TrEMBL entries that have an Ensembl DR line. The TrEMBL entries are likely to overlap with the Swiss-Prot entries or their isoforms.
!If a particular protein accession is not annotated with GO, then it will not appear in this file.
!
!Note that the annotation set in this file is filtered in order to reduce redundancy; the full, unfiltered set can be found in
!ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gaf.gz
!
!Generated: 2019-04-08 12:01
!GO-version: http://purl.obolibrary.org/obo/go/releases/2019-03-29/extensions/go-plus.owl
!

Contents

gorule-0000008

gorule-0000020

other

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 6

Messages

• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) -- UniProtKB A0A1L1RL66 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:A0A1D5PFN2
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005215) -- UniProtKB A0A1L1RR63 LOC428335 GO:0005215 GO_REF:0000002 IEA InterPro:IPR001958|InterPro:IPR005829 F Uncharacterized protein LOC428335|RCJMB04_17g5 protein taxon:9031 20190406 InterPro UniProtKB:Q5ZJK7
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005215) -- UniProtKB A0A3Q3A4N4 E1BTC0 GO:0005215 GO_REF:0000002 IEA InterPro:IPR001898 F Solute carrier family 13 member 2 protein taxon:9031 20190406 InterPro UniProtKB:E1BTC0
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005215) -- UniProtKB F1P5V0 SLCO4A1 GO:0005215 GO_REF:0000002 IEA InterPro:IPR004156 F Solute carrier organic anion transporter family member SLCO4A1 protein taxon:9031 20190406 InterPro UniProtKB:A0A1L1RJP3
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) -- UniProtKB Q9YGL6 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:Q9YGL6-2
• WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms (GO:0005622) -- UniProtKB Q9YGL6 PALM GO:0005622 PMID:9813098 IDA C Paralemmin-1 PALM protein taxon:9031 20170202 AgBase part_of(UBERON:0000955) UniProtKB:Q9YGL6-3

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 6

Messages

• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0008565) -- UniProtKB A0A1D5PEA8 XPO6 GO:0008565 GO_REF:0000002 IEA InterPro:IPR040016 F Uncharacterized protein XPO6 protein taxon:9031 20190406 InterPro UniProtKB:A0A1D5PKA8
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0008565) -- UniProtKB A0A1D5PRZ7 USO1 GO:0008565 PMID:21873635 IBA MGI:MGI:1929095|PANTHER:PTN000000707 F Uncharacterized protein USO1 protein taxon:9031 20170228 GO_Central UniProtKB:F1NJ69
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0008565) -- UniProtKB A0A1L1RN46 NUTF2 GO:0008565 PMID:21873635 IBA MGI:MGI:1915301|PANTHER:PTN000289032 F Uncharacterized protein NUTF2 protein taxon:9031 20170412 GO_Central UniProtKB:F1NLL4
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0008565) -- UniProtKB A0A1L1RX89 KPNA2 GO:0008565 GO_REF:0000002 IEA InterPro:IPR036975 F Importin subunit alpha KPNA2 protein taxon:9031 20190406 InterPro UniProtKB:F1NJS6
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0008565) -- UniProtKB A0A3Q2UH35 AFTPH GO:0008565 PMID:21873635 IBA FB:FBgn0038223|PANTHER:PTN001043950 F Uncharacterized protein AFTPH protein taxon:9031 20181004 GO_Central UniProtKB:A0A1D5PLS1
• WARNING - Obsolete class with no replacement: Violates GORULE:0000020 (GO:0008565) -- UniProtKB A0A3Q3AHG4 TNPO1 GO:0008565 PMID:21873635 IBA MGI:MGI:107532|MGI:MGI:1917822|PANTHER:PTN000055427|SGD:S000000912|SGD:S000004339|SGD:S000004925|TAIR:locus:2039410|TAIR:locus:2168586 F Uncharacterized protein TNPO1 protein taxon:9031 20170228 GO_Central UniProtKB:A0A1D5PZB8

other

• total: 0

#Line number RuleID ViolationType Message Line
#------------
#------------
# Validation for #16552 annotations in 16571 lines
#------------
#Line number RuleID ViolationType Message Line
#------------
# GO_AR:0000014 Valid GO term ID Error count: 5
1516 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A1D5P7I0 CLASP1 GO:0010717 PMID:23940118 IMP P Uncharacterized protein CLASP1 protein taxon:9031 20150521 UniProt happens_during(GO:0007369),has_agent(GO:0043256),occurs_in(CL:0000352) UniProtKB:E1BVC3
1524 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A1D5P7I0 CLASP1 GO:1904261 PMID:23940118 IMP P Uncharacterized protein CLASP1 protein taxon:9031 20150521 UniProt happens_during(GO:0001837),happens_during(GO:0007369),has_agent(GO:0043256),occurs_in(CL:0000352) UniProtKB:E1BVC3
6847 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q2U2T5 CLASP2 GO:0010717 PMID:23940118 IMP P Uncharacterized protein CLASP2 protein taxon:9031 20170214 UniProt happens_during(GO:0007369),has_agent(GO:0043256),occurs_in(CL:0000352) UniProtKB:A0A1D5P1B0
6849 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q2U2T5 CLASP2 GO:1904261 PMID:23940118 IMP P Uncharacterized protein CLASP2 protein taxon:9031 20170214 UniProt happens_during(GO:0001837),happens_during(GO:0007369),has_agent(GO:0043256),occurs_in(CL:0000352) UniProtKB:A0A1D5P1B0
7309 GO_AR:0000014 Error The relation 'has_agent' in the c16 annotation extension is an obsolete relation UniProtKB A0A3Q2U6L4 PHLDB2 GO:0010717 GO_REF:0000024 ISS UniProtKB:Q86SQ0 P Uncharacterized protein PHLDB2 protein taxon:9031 20150521 UniProt happens_during(GO:0007369),has_agent(GO:0043256),occurs_in(CL:0000352) UniProtKB:E1C7W8
#------------

GO:0005623 cell AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi ISS
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi ISS
GO:0032259 methylation AnnotationPropagation P GO:0046539 histamine N-methyltransferase activity IDA
GO:0097458 neuron part FoldBasedPredictor GO:0045177 apical part of cell adjacent_to GO:0032421 stereocilium bundle part_of CL:0000202 auditory hair cell part_of UBERON:0001844 cochlea IDA
GO:0005829 cytosol FoldBasedPredictor GO:0051219 phosphoprotein binding occurs_in GO:0005829 cytosol occurs_in UBERON:0000993 oviduct IPI
GO:0097223 sperm part FoldBasedPredictor GO:0005623 cell part_of CL:0000019 sperm IDA
GO:0005829 cytosol FoldBasedPredictor GO:0051219 phosphoprotein binding occurs_in GO:0005829 cytosol occurs_in UBERON:0000993 oviduct IPI
GO:0008144 drug binding FoldBasedPredictor GO:1990239 steroid hormone binding has_direct_input CHEBI:17026 progesterone occurs_in UBERON:0000993 oviduct ISS
GO:0044295 axonal growth cone FoldBasedPredictor GO:2000009 negative regulation of protein localization to cell surface occurs_in GO:0044295 axonal growth cone transports_or_maintains_localization_of UniProtKB:P79795 IMP