Table of contents

Report

Group: goa - Dataset: goa_chicken_isoform

SUMMARY

This report generated on 2020-08-14

Header From Original Association File

!gaf-version: 2.1
!
!The set of protein accessions included in this file is based on UniProt complete proteomes, which may provide more than one protein per gene.
!They include all Swiss-Prot entries for the species plus any TrEMBL entries that have an Ensembl DR line. The TrEMBL entries are likely to overlap with the Swiss-Prot entries or their isoforms.
!If a particular protein accession is not annotated with GO, then it will not appear in this file.
!
!Note that the annotation set in this file is filtered in order to reduce redundancy; the full, unfiltered set can be found in
!ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/goa_uniprot_all.gaf.gz
!
!Generated: 2020-08-12 16:58
!GO-version: http://purl.obolibrary.org/obo/go/releases/2020-08-04/extensions/go-plus.owl
!

Contents

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MESSAGES

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GAF lines are parsed according to GAF 2.1 specifications

Messages

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No 'NOT' annotations to 'protein binding ; GO:0005515'

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IEP and HEP usage is restricted to terms from the Biological Process ontology

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IPI should not be used with GO:0003824 catalytic activity or descendents

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No annotations should be made to uninformative high level terms

Messages

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ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

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Taxon-appropriate annotation check

Messages

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Dual species taxon check

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With/From: IC annotations require a With/From GO ID

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IDA annotations must not have a With/From entry

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IPI annotations require a With/From entry

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Aspect can only be one of C, P, F and should be repaired using the GO term

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IEAs should be less than one year old.

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Deprecated GO_REFs are not allowed

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IBA annotations should ONLY be assigned_by GO_Central and have PMID:21873635 as a reference

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Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

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Qualifier: IKR evidence code requires a NOT qualifier

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Check for valid combination of evidence code and GO_REF

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The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms.

Messages

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Annotations to ISS, ISA and ISO should not be self-referential

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Group specific filter rules should be applied to annotations

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Object extensions should conform to the extensions-patterns.yaml file in metadata

other

Predictions

GO:0120009 intermembrane lipid transfer AnnotationPropagation P GO:0120020 cholesterol transfer activity ISS
GO:0015918 sterol transport AnnotationPropagation P GO:0120020 cholesterol transfer activity ISS
GO:0005829 cytosol AnnotationPropagation C GO:0042147 retrograde transport, endosome to Golgi ISS
GO:0072348 sulfur compound transport FoldBasedPredictor GO:0055085 transmembrane transport transports_or_maintains_localization_of CHEBI:8927 S-(2,4-dinitrophenyl)glutathione ISS
GO:0071705 nitrogen compound transport FoldBasedPredictor GO:0055085 transmembrane transport transports_or_maintains_localization_of CHEBI:8927 S-(2,4-dinitrophenyl)glutathione ISS
GO:0015711 organic anion transport FoldBasedPredictor GO:0055085 transmembrane transport transports_or_maintains_localization_of CHEBI:8927 S-(2,4-dinitrophenyl)glutathione ISS
GO:0098656 anion transmembrane transport FoldBasedPredictor GO:0055085 transmembrane transport transports_or_maintains_localization_of CHEBI:8927 S-(2,4-dinitrophenyl)glutathione ISS
GO:0044295 axonal growth cone FoldBasedPredictor GO:2000009 negative regulation of protein localization to cell surface occurs_in GO:0044295 axonal growth cone transports_or_maintains_localization_of UniProtKB:F1N8P1 IMP

Predictions (experimental)