Table of contents

Summary

GAF Parser Summary

There are 50 GAF parser warnings.

GAF summary

Found 25900 annotations in 25919 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000003 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000003) Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field, there are 9 violations with type Warning.

GAF Prediction Summary

Found 1051 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf

Report

Group: ecocyc - Dataset: ecocyc

SUMMARY

This report generated on 2018-12-16

Contents

gorule-0000001

gorule-0000008

gorule-0000020

gorule-0000027

gorule-0000029

gorule-0000030

other

MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.1 specifications

Messages

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

gorule-0000027

Each identifier in GAF is valid

Messages

gorule-0000029

All IEAs over a year old are removed

Messages