#Line number RuleID ViolationType Message Line #------------ # GAF Parser ERROR count: 0 #------------ # GAF Parser WARNING count: 50 45 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0A6F1 carA Contributes_to GO:0004088 PMID:1827118 IMP F gene taxon:83333 20090223 EcoliWiki 50 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P00968 carB Contributes_to GO:0004088 PMID:14718657 IDA F gene taxon:83333 20120615 EcoliWiki 55 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P00968 carB Contributes_to GO:0004088 PMID:1737023 IGI EcoliWiki:carA F gene taxon:83333 20090122 EcoliWiki 182 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P06959 aceF Contributes_to GO:0004738 PMID:3903169 IDA F gene taxon:83333 20091016 EcoliWiki 350 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0ACF4 hupB Contributes_to GO:0003677 PMID:10551881 IDA F gene taxon:83333 20100507 EcoliWiki 636 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0A6Y1 ihfB Contributes_to GO:0043565 PMID:10551881 IDA F gene taxon:83333 20100507 EcoliWiki 763 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P76014 dhaL Contributes_to GO:0016740 PMID:11350937 IDA F gene taxon:83333 20110715 EcoliWiki 782 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0A877 trpA Contributes_to GO:0004834 PMID:8463331 IDA F gene taxon:83333 20090818 EcoliWiki 788 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0A879 trpB Contributes_to GO:0004834 PMID:8325869 IDA F gene taxon:83333 20090824 EcoliWiki 921 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AGD3 sodB Contributes_to GO:0004784 PMID:3022287 IMP F gene taxon:83333 20090316 EcoliWiki 941 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0A6X7 ihfA Contributes_to GO:0043565 PMID:10551881 IDA F gene taxon:83333 20100507 EcoliWiki 1120 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P00452 nrdA Contributes_to GO:0004748 PMID:13973714 IDA F gene taxon:83333 20120615 EcoliWiki 1123 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P69924 nrdB Contributes_to GO:0004748 PMID:13973714 IDA F gene taxon:83333 20080917 EcoliWiki 1124 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P69924 nrdB Contributes_to GO:0004748 PMID:13973714 IDA F gene taxon:83333 20120615 EcoliWiki 1144 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFF0 nuoN Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080419 EcoliWiki 1147 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFE8 nuoM Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080419 EcoliWiki 1150 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P33607 nuoL Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080419 EcoliWiki 1153 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFE4 nuoK Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080419 EcoliWiki 1156 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFE0 nuoJ Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080419 EcoliWiki 1160 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFD6 nuoI Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080722 EcoliWiki 1164 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFD4 nuoH Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080419 EcoliWiki 1169 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P33602 nuoG Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080722 EcoliWiki 1172 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P33602 nuoG Contributes_to GO:0010181 PMID:7607227 IDA F gene taxon:83333 20080722 EcoliWiki 1175 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P31979 nuoF Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080722 EcoliWiki 1177 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P31979 nuoF Contributes_to GO:0010181 PMID:7607227 IDA F gene taxon:83333 20080722 EcoliWiki 1181 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFD1 nuoE Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080419 EcoliWiki 1182 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFD1 nuoE Contributes_to GO:0010181 PMID:7607227 IDA F gene taxon:83333 20080419 EcoliWiki 1186 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P33599 nuoC Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080722 EcoliWiki 1191 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFC7 nuoB Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20080722 EcoliWiki 1194 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFC3 nuoA Contributes_to GO:0003954 PMID:3122832 IDA F gene taxon:83333 20100621 EcoliWiki 1355 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AGD7 ffh Contributes_to GO:0003924 PMID:7612669 IDA F gene taxon:83333 20080805 EcoliWiki 1373 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P39452 nrdE Contributes_to GO:0004748 PMID:7809142 IGI EcoliWiki:nrdA|EcoliWiki:nrdB F gene taxon:83333 20110815 EcoliWiki 1377 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P37146 nrdF Contributes_to GO:0004748 PMID:7809142 IGI EcoliWiki:nrdA|EcoliWiki:nrdB F gene taxon:83333 20110815 EcoliWiki 1411 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P23845 cysN Contributes_to GO:0004781 PMID:2828368 IDA F gene taxon:83333 20110815 EcoliWiki 1415 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P21156 cysD Contributes_to GO:0004781 PMID:2828368 IDA F gene taxon:83333 20100510 EcoliWiki 1439 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P04993 recD Contributes_to GO:0004386 PMID:1618858 IDA F gene taxon:83333 20090811 EcoliWiki 1443 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P04993 recD Contributes_to GO:0008854 PMID:1618858 IDA F gene taxon:83333 20090811 EcoliWiki 1538 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFI2 parC Contributes_to GO:0003916 PMID:1334483 IDA F gene taxon:83333 20081208 EcoliWiki 1541 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AFI2 parC Contributes_to GO:0003918 PMID:8227000 IDA F gene taxon:83333 20081208 EcoliWiki 1759 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P22731 livF Contributes_to GO:0015190 PMID:2195019 IDA F gene taxon:83333 20100507 EcoliWiki 1928 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0A6E6 atpC Contributes_to GO:0046933 PMID:2863270 IDA F gene taxon:83333 20080731 EcoliWiki 1931 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0ABB4 atpD Contributes_to GO:0046933 PMID:2863270 IDA F gene taxon:83333 20080731 EcoliWiki 1933 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0ABA6 atpG Contributes_to GO:0046933 PMID:2863270 IDA F gene taxon:83333 20080731 EcoliWiki 1936 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0ABB0 atpA Contributes_to GO:0046961 PMID:2863270 IDA F gene taxon:83333 20110815 EcoliWiki 1937 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0ABA4 atpH Contributes_to GO:0046933 PMID:2863270 IDA F gene taxon:83333 20080731 EcoliWiki 1940 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0ABA0 atpF Contributes_to GO:0046961 PMID:2863271 IMP F gene taxon:83333 20100621 EcoliWiki 1943 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P68699 atpE Contributes_to GO:0046961 PMID:2863271 IMP F gene taxon:83333 20100621 EcoliWiki 1946 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0AB98 atpB Contributes_to GO:0046961 PMID:2863271 IMP F gene taxon:83333 20110815 EcoliWiki 2219 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P0A9N8 nrdG Contributes_to GO:0004748 PMID:8954104 IMP F gene taxon:83333 20120615 EcoliWiki 2223 WARNING Repairing qualifier 'contributes_to' from: Contributes_to UniProtKB P28903 nrdD Contributes_to GO:0004748 PMID:8954104 IMP F gene taxon:83333 20120615 EcoliWiki #------------ #------------ # Validation for #25673 annotations in 25692 lines #------------ #Line number RuleID ViolationType Message Line #------------ # GO_AR:0000003 Annotations to 'binding ; GO:0005488' and 'protein binding ; GO:0005515' should be made with IPI and an interactor in the 'with' field Warning count: 10 21874 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG13721 yccS GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F Inner membrane protein YccS UniProtKB:P75870|PTN001577038 protein taxon:83333 20170420 GO_Central 22125 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG13141 dinB GO:0005515 PMID:21873635 IBA EcoGene:EG13141|MGI:MGI:1349767|PANTHER:PTN000117876|PomBase:SPCC553.07c F DNA polymerase IV UniProtKB:Q47155|PTN000118193 protein taxon:83333 20180216 GO_Central 22348 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG10461 htpG GO:0005515 PMID:21873635 IBA EcoGene:EG10461|PANTHER:PTN000163828 F Chaperone protein HtpG UniProtKB:P0A6Z3|PTN000163845 protein taxon:83333 20180918 GO_Central 22790 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG12906 yhfK GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F Uncharacterized protein YhfK UniProtKB:P45537|PTN001577037 protein taxon:83333 20170420 GO_Central 23231 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG20044 dctA GO:0005515 PMID:21873635 IBA EcoGene:EG20044|PANTHER:PTN000238506 F Aerobic C4-dicarboxylate transport protein UniProtKB:P0A830|PTN000238526 protein taxon:83333 20170608 GO_Central 23732 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG12822 aaeB GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F p-hydroxybenzoic acid efflux pump subunit AaeB UniProtKB:P46481|PTN000775499 protein taxon:83333 20170420 GO_Central 24687 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG11891 yeeA GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F Inner membrane protein YeeA UniProtKB:P33011|PTN002021269 protein taxon:83333 20170420 GO_Central 25021 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG13945 ydhK GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F Uncharacterized transporter YdhK UniProtKB:P76186|PTN000775498 protein taxon:83333 20170420 GO_Central 25536 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG11953 mdtO GO:0005515 PMID:21873635 IBA EcoGene:EG11953|PANTHER:PTN002021271 F Multidrug resistance protein MdtO UniProtKB:P32715|PTN001293374 protein taxon:83333 20170420 GO_Central 25555 GO_AR:0000003 Warning Annotations to 'binding' (GO:0005488) and 'protein binding' (GO:0005515) should be made with an IPI evidence code and the interactor in the 'with' field EcoGene EG10833 recQ GO:0005515 PMID:21873635 IBA EcoGene:EG10833|PANTHER:PTN001787175 F ATP-dependent DNA helicase RecQ UniProtKB:P15043|PTN001009465 protein taxon:83333 20180411 GO_Central #------------