Table of contents

Summary

GAF summary

Found 373325 annotations in 373364 lines.

GAF Validation Summary Errors are reported first.

For rule GO_AR:0000008 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000008) No annotations should be made to uninformative high level terms, there are 4368 violations with type Warning.

For rule GO_AR:0000013 (http://www.geneontology.org/GO.annotation_qc.shtml#GO_AR:0000013) Taxon-appropriate annotation check, there are 58319 violations with type Warning.

GAF Prediction Summary

Found 650 predictions, see prediction file for details.

Used Ontology Summary

go/extensions/go-gaf    go/releases/2019-11-16/extensions/go-gaf.owl

Report

Group: cgd - Dataset: cgd

SUMMARY

This report generated on 2019-11-18

Header From Original Association File

!gaf-version: 2.0
! File name: gene_association.cgd
! Organism 1: Candida albicans SC5314, genome version: A22-s07-m01-r96, taxon: 237561
! Organism 2: Candida glabrata CBS138, genome version: s02-m07-r43, taxon: 284593
! Organism 3: Candida auris B8441, genome version: s01-m01-r04, taxon: 498019
! Organism 4: Candida dubliniensis CD36, genome version: s01-m02-r23, taxon: 573826
! Organism 5: Candida parapsilosis CDC317, genome version: s01-m03-r40, taxon: 578454
! Organism 6: Candida orthopsilosis Co 90-125, taxon: 1136231
! Organism 7: Candida albicans WO-1, taxon: 294748
! Organism 8: Debaryomyces hansenii CBS767, taxon: 284592
! Organism 9: Lodderomyces elongisporus NRLL YB-4239, taxon: 379508
! Organism 10: Candida tropicalis MYA-3404, taxon: 294747
! Organism 11: Candida lusitaniae CBS6936, taxon: 36911
! Organism 12: Candida lusitaniae ATCC 42720, taxon: 306902
! Organism 13: Candida guilliermondii ATCC 6260, taxon: 294746
! Date created: Mon Nov 18 01:21:16 2019
! Created by: The Candida Genome Database (http://www.candidagenome.org/)
! Contact Email: candida-curator AT lists DOT stanford DOT edu
! Funding: NIDCR at US NIH, grant number 1-R01-DE015873-01
!

Contents

gorule-0000002

gorule-0000006

gorule-0000007

gorule-0000008

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

gorule-0000017

gorule-0000018

gorule-0000020

gorule-0000028

gorule-0000029

gorule-0000030

gorule-0000033

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

gorule-0000050

other

MESSAGES

gorule-0000002

No 'NOT' annotations to 'protein binding ; GO:0005515'

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology

gorule-0000007

IPI should not be used with catalytic activity molecular function terms

gorule-0000008

No annotations should be made to uninformative high level terms

Messages