GORULE violations assigned by sgd

Contents

gorule-0000001 GAF lines are parsed according to GAF 2.2 specifications

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000061 Allowed gene product to term relations (gp2term)

MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.2 specifications

• total: 18

messages

• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000006490 URS0000413C32_559292 contributes_to GO:0004526 PMID:19095620 IDA F Saccharomyces cerevisiae S288C RNase P Ribonucleoprotein enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000006490 URS0000413C32_559292 contributes_to GO:0004526 PMID:1990278 IMP F Saccharomyces cerevisiae S288C RNase P Ribonucleoprotein enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000006490 URS0000413C32_559292 contributes_to GO:0004526 PMID:9620854 IDA F Saccharomyces cerevisiae S288C RNase P Ribonucleoprotein enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000006490 URS0000413C32_559292 involved_in GO:0008033 PMID:1990278 IMP P Saccharomyces cerevisiae S288C RNase P Ribonucleoprotein enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000006490 URS0000413C32_559292 involved_in GO:0008033 PMID:9620854 IDA P Saccharomyces cerevisiae S288C RNase P Ribonucleoprotein enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000006490 URS0000413C32_559292 involved_in GO:0034965 PMID:18713869 IDA P Saccharomyces cerevisiae S288C RNase P Ribonucleoprotein enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000006490 URS0000413C32_559292 involved_in GO:0034965 PMID:18713869 IMP P Saccharomyces cerevisiae S288C RNase P Ribonucleoprotein enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000006490 URS0000413C32_559292 part_of GO:0005655 PMID:19095620 IDA C Saccharomyces cerevisiae S288C RNase P Ribonucleoprotein enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000006490 URS0000413C32_559292 part_of GO:0005655 PMID:9620854 IDA C Saccharomyces cerevisiae S288C RNase P Ribonucleoprotein enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000007436 URS000006F31F_559292 contributes_to GO:0000171 PMID:8247008 IMP F Saccharomyces cerevisiae S288C Nuclear Mitochondrial processing Endoribonuclease enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000007436 URS000006F31F_559292 contributes_to GO:0000171 PMID:8290578 IMP F Saccharomyces cerevisiae S288C Nuclear Mitochondrial processing Endoribonuclease enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000007436 URS000006F31F_559292 contributes_to GO:0000171 PMID:8602511 IMP F Saccharomyces cerevisiae S288C Nuclear Mitochondrial processing Endoribonuclease enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000007436 URS000006F31F_559292 involved_in GO:0006364 PMID:8247008 IMP P Saccharomyces cerevisiae S288C Nuclear Mitochondrial processing Endoribonuclease enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000007436 URS000006F31F_559292 involved_in GO:0006364 PMID:8290578 IMP P Saccharomyces cerevisiae S288C Nuclear Mitochondrial processing Endoribonuclease enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000007436 URS000006F31F_559292 involved_in GO:0006364 PMID:8602511 IDA P Saccharomyces cerevisiae S288C Nuclear Mitochondrial processing Endoribonuclease enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000007436 URS000006F31F_559292 involved_in GO:0006397 PMID:22977255 IMP P Saccharomyces cerevisiae S288C Nuclear Mitochondrial processing Endoribonuclease enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000007436 URS000006F31F_559292 involved_in GO:0045787 PMID:12136008 IMP P Saccharomyces cerevisiae S288C Nuclear Mitochondrial processing Endoribonuclease enzymatic_RNA taxon:559292 20150625 SGD `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`SGD S000007436 URS000006F31F_559292 part_of GO:0000172 PMID:1398074 IDA C Saccharomyces cerevisiae S288C Nuclear Mitochondrial processing Endoribonuclease enzymatic_RNA taxon:559292 20150625 SGD `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 16

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`SGD S000002580 ARG82 involved_in GO:0000821 PMID:11119723 IMP P inositol polyphosphate multikinase ARGR3|IPK2|YDR173C protein taxon:559292 20130807 SGD SGD:S000002580 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`SGD S000002580 ARG82 involved_in GO:0000821 PMID:2274024 IMP P inositol polyphosphate multikinase ARGR3|IPK2|YDR173C protein taxon:559292 20130807 SGD SGD:S000002580 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`SGD S000002580 ARG82 involved_in GO:0000821 PMID:8043104 IMP P inositol polyphosphate multikinase ARGR3|IPK2|YDR173C protein taxon:559292 20130807 SGD SGD:S000002580 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`SGD S000004565 ARG81 involved_in GO:0000821 PMID:10688655 IMP P ARGR2|YML099C protein taxon:559292 20130807 SGD SGD:S000004565 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`SGD S000000927 RSP5 involved_in GO:0019220 PMID:18165238 IGI SGD:S000001930 P NEDD4 family E3 ubiquitin-protein ligase HPG1|MDP1|MUT2|NPI1|SMM1|UBY1|YER125W protein taxon:559292 20130807 SGD SGD:S000000927 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`SGD S000002782 PHO92 involved_in GO:0019220 PMID:24206186 IMP P mRNA-binding phosphate metabolism regulator MRB1|YDR374C protein taxon:559292 20140219 SGD SGD:S000002782 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`SGD S000001456 MET28 involved_in GO:0031335 PMID:8665859 IMP P YIR017C protein taxon:559292 20130807 SGD SGD:S000001456 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`SGD S000002661 MET32 involved_in GO:0031335 PMID:9199298 IDA P YDR253C protein taxon:559292 20130807 SGD SGD:S000002661 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`SGD S000002661 MET32 involved_in GO:0031335 PMID:9199298 IGI SGD:S000005959 P YDR253C protein taxon:559292 20130807 SGD SGD:S000002661 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`SGD S000002661 MET32 involved_in GO:0031335 PMID:9199298 IMP P YDR253C protein taxon:559292 20130807 SGD SGD:S000002661 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`SGD S000005255 SKP2 involved_in GO:0031335 PMID:20936605 IMP P putative SCF ubiquitin ligase complex subunit SKP2 YNL311C protein taxon:559292 20130807 SGD SGD:S000005255 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`SGD S000005959 MET31 involved_in GO:0031335 PMID:9199298 IDA P YPL038W protein taxon:559292 20130807 SGD SGD:S000005959 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`SGD S000005959 MET31 involved_in GO:0031335 PMID:9199298 IGI SGD:S000002661 P YPL038W protein taxon:559292 20130807 SGD SGD:S000005959 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`SGD S000005959 MET31 involved_in GO:0031335 PMID:9199298 IMP P YPL038W protein taxon:559292 20130807 SGD SGD:S000005959 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`SGD S000000277 RDH54 located_in GO:0005634 PMID:16831867 IC GO:0032508 C DNA-dependent ATPase RDH54 TID1|YBR073W protein taxon:559292 20130807 SGD SGD:S000000277 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`SGD S000007339 ATP19 contributes_to GO:0046933 PMID:9857174 IC GO:0000276 F F1F0 ATP synthase subunit k YOL077W-A protein taxon:559292 20141205 SGD SGD:S000007339 `

gorule-0000061

Allowed gene product to term relations (gp2term)

• total: 63

messages

• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000000008 MDM10 is_active_in GO:0032865 PMID:13679517 IPI SGD:S000005369 C FUN37|YAL010C protein taxon:559292 20220513 SGD SGD:S000000008 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000000008 MDM10 is_active_in GO:0032865 PMID:17410204 IPI SGD:S000003929 C FUN37|YAL010C protein taxon:559292 20220513 SGD SGD:S000000008 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000000008 MDM10 is_active_in GO:0032865 PMID:17410204 IPI SGD:S000005369 C FUN37|YAL010C protein taxon:559292 20220513 SGD SGD:S000000008 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000000213 HHF1 is_active_in GO:0000786 PMID:2275823 TAS C histone H4 YBR009C protein taxon:559292 20240320 SGD SGD:S000000213 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000000214 HHT1 is_active_in GO:0000786 PMID:2275823 TAS C histone H3 BUR5|SIN2|YBR010W protein taxon:559292 20240517 SGD SGD:S000000214 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000000678 AHC2 is_active_in GO:0140671 PMID:21734642 IMP C YCR082W protein taxon:559292 20210915 SGD SGD:S000000678 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000000678 AHC2 is_active_in GO:0140671 PMID:21734642 IPI SGD:S000000516 C YCR082W protein taxon:559292 20210915 SGD SGD:S000000678 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000000678 AHC2 is_active_in GO:0140671 PMID:21734642 IPI SGD:S000002583 C YCR082W protein taxon:559292 20210915 SGD SGD:S000000678 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000000678 AHC2 is_active_in GO:0140671 PMID:21734642 IPI SGD:S000002856 C YCR082W protein taxon:559292 20210915 SGD SGD:S000000678 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000000678 AHC2 is_active_in GO:0140671 PMID:21734642 IPI SGD:S000003484 C YCR082W protein taxon:559292 20210915 SGD SGD:S000000678 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000000678 AHC2 is_active_in GO:0140671 PMID:21734642 IPI SGD:S000005549 C YCR082W protein taxon:559292 20210915 SGD SGD:S000000678 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000000824 SRB4 is_active_in GO:0070847 PMID:9891034 IDA C MED17|YER022W protein taxon:559292 20221020 SGD SGD:S000000824 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000000933 RPS26B is_active_in GO:0030686 PMID:25144938 IPI SGD:S000000451 C 40S ribosomal protein eS26 RPS26B YER131W protein taxon:559292 20200824 SGD SGD:S000000933 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000001022 ECM29 is_active_in GO:0000502 PMID:12408819 IDA C YHL030W protein taxon:559292 20200804 SGD SGD:S000001022 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000001054 VPS29 is_active_in GO:0170071 PMID:35466426 IDA C retromer subunit VPS29 PEP11|VPT6|YHR012W protein taxon:559292 20250819 SGD SGD:S000001054 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000001098 RSC30 is_active_in GO:0016586 PMID:32188943 IDA C YHR056C protein taxon:559292 20220114 SGD SGD:S000001098 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000001117 PPE1 is_active_in GO:0005763 PMID:9151978 IDA C phosphoprotein phosphatase methylesterase 1 YHR075C protein taxon:559292 20221021 SGD SGD:S000001117 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000001500 HCS1 is_active_in GO:0033203 PMID:9341218 IDA C ATP-dependent 5'-3' DNA helicase HCS1 DIP1|YKL017C protein taxon:559292 20211015 SGD SGD:S000001500 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000001500 HCS1 is_active_in GO:0043601 PMID:8257676 IDA C ATP-dependent 5'-3' DNA helicase HCS1 DIP1|YKL017C protein taxon:559292 20211015 SGD SGD:S000001500 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000001551 NUP100 is_active_in GO:0005643 PMID:10684247 IDA C FG-nucleoporin NUP100 NSP100|YKL068W protein taxon:559292 20210315 SGD SGD:S000001551 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000001551 NUP100 is_active_in GO:0005643 PMID:8195299 IDA C FG-nucleoporin NUP100 NSP100|YKL068W protein taxon:559292 20210315 SGD SGD:S000001551 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000001845 SWP82 is_active_in GO:0016514 PMID:16204215 IDA C YFL049W protein taxon:559292 20220113 SGD SGD:S000001845 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000001917 ATG18 is_active_in GO:0170071 PMID:35466426 IDA C phosphoinositide binding protein ATG18 AUT10|CVT18|NMR1|SVP1|YFR021W protein taxon:559292 20250819 SGD SGD:S000001917 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000002200 SIR2 is_active_in GO:0005677 PMID:9122169 IDA C NAD-dependent histone deacetylase SIR2 MAR1|YDL042C protein taxon:559292 20220112 SGD SGD:S000002200 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000002241 RPS16B is_active_in GO:0022627 PMID:9559554 NAS C 40S ribosomal protein uS9 RPS16B YDL083C protein taxon:559292 20220523 SGD SGD:S000002241 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000002268 TMA17 is_active_in GO:0005835 PMID:32160528 IDA C ADC17|YDL110C protein taxon:559292 20200319 SGD SGD:S000002268 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000002367 NHP2 is_active_in GO:0031429 PMID:9843512 IPI UniProtKB:P28007 C snoRNA-binding protein NHP2 YDL208W protein taxon:559292 20220721 SGD SGD:S000002367 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000002469 LCB2 is_active_in GO:0017059 PMID:8058731 IMP C serine C-palmitoyltransferase LCB2 SCS1|TSC1|YDR062W protein taxon:559292 20250502 SGD SGD:S000002469 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000002528 DPB4 is_active_in GO:0008623 PMID:15024052 IDA C DNA polymerase epsilon noncatalytic subunit YDR121W protein taxon:559292 20230221 SGD SGD:S000002528 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000002528 DPB4 is_active_in GO:0008623 PMID:15024052 IPI SGD:S000005831 C DNA polymerase epsilon noncatalytic subunit YDR121W protein taxon:559292 20230221 SGD SGD:S000002528 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000002547 MTQ2 is_active_in GO:0015934 PMID:33166396 IDA C S-adenosylmethionine-dependent methyltransferase YDR140W protein taxon:559292 20210204 SGD SGD:S000002547 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000002730 MRPL35 is_active_in GO:0005762 PMID:12392552 IDA C mitochondrial 54S ribosomal protein YmL35 YDR322W|mL38 protein taxon:559292 20210521 SGD SGD:S000002730 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000002730 MRPL35 is_active_in GO:0005762 PMID:9151978 IDA C mitochondrial 54S ribosomal protein YmL35 YDR322W|mL38 protein taxon:559292 20210521 SGD SGD:S000002730 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000002904 PUF6 is_active_in GO:0030687 PMID:27458021 IDA C YDR496C protein taxon:559292 20230126 SGD SGD:S000002904 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000002999 RPL24A is_active_in GO:0022625 PMID:11983894 IDA C 60S ribosomal protein eL24 RPL24A RPL30A|YGL031C protein taxon:559292 20220706 SGD SGD:S000002999 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000003043 MPS2 is_active_in GO:0034993 PMID:32967926 IDA C MMC1|YGL075C protein taxon:559292 20210311 SGD part_of(GO:0000781) SGD:S000003043 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000003157 RPS26A is_active_in GO:0030686 PMID:25144938 IPI SGD:S000000451 C 40S ribosomal protein eS26 RPS26A RPS26|YGL189C protein taxon:559292 20210412 SGD SGD:S000003157 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000003194 OST5 is_active_in GO:0008250 PMID:12805367 IDA C dolichyl-diphosphooligosaccharide--protein glycotransferase subunit YGL226C-A protein taxon:559292 20220121 SGD SGD:S000003194 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000003345 DAM1 is_active_in GO:0042729 PMID:15640796 IDA C YGR113W protein taxon:559292 20220620 SGD SGD:S000003345 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000003345 DAM1 is_active_in GO:0042729 PMID:15664196 IDA C YGR113W protein taxon:559292 20220620 SGD SGD:S000003345 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000003380 RPL24B is_active_in GO:0022625 PMID:11983894 IDA C 60S ribosomal protein eL24 RPL24B RPL30B|YGR148C protein taxon:559292 20220706 SGD SGD:S000003380 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000003589 PEP8 is_active_in GO:0170071 PMID:35466426 IDA C retromer subunit PEP8 GRD6|VPS26|VPT4|YJL053W protein taxon:559292 20250819 SGD SGD:S000003589 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000003690 VPS35 is_active_in GO:0170071 PMID:35466426 IDA C retromer subunit VPS35 ENV1|GRD9|VPT7|YJL154C protein taxon:559292 20250819 SGD SGD:S000003690 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000003848 EMC2 is_active_in GO:0072546 PMID:19325107 IDA C YJR088C protein taxon:559292 20220721 SGD SGD:S000003848 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000003937 EMC6 is_active_in GO:0072546 PMID:19325107 IDA C YLL014W protein taxon:559292 20220721 SGD SGD:S000003937 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000004157 RPS31 is_active_in GO:0022627 PMID:18782943 IDA C ubiquitin-40S ribosomal protein eS31 RPS31 fusion protein RPS37|UBI3|YLR167W protein taxon:559292 20220826 SGD SGD:S000004157 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000004157 RPS31 is_active_in GO:0022627 PMID:385049 IDA C ubiquitin-40S ribosomal protein eS31 RPS31 fusion protein RPS37|UBI3|YLR167W protein taxon:559292 20220826 SGD SGD:S000004157 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000004194 QRI5 is_active_in GO:0005763 PMID:28154081 IDA C mitochondrial 37S ribosomal protein QRI5 COX24|YLR204W|mS38 protein taxon:559292 20220620 SGD SGD:S000004194 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000004313 SFH1 is_active_in GO:0016586 PMID:31672915 IDA C YLR321C protein taxon:559292 20220113 SGD SGD:S000004313 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000004434 SIR3 is_active_in GO:0005677 PMID:9122169 IDA C chromatin-silencing protein SIR3 CMT1|MAR2|STE8|YLR442C protein taxon:559292 20211122 SGD SGD:S000004434 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000004751 RPS16A is_active_in GO:0022627 PMID:9559554 NAS C 40S ribosomal protein uS9 RPS16A YMR143W protein taxon:559292 20220523 SGD SGD:S000004751 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000004911 LCB1 is_active_in GO:0017059 PMID:8058731 IMP C serine C-palmitoyltransferase LCB1 END8|TSC2|YMR296C protein taxon:559292 20250502 SGD SGD:S000004911 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000004950 MRP7 is_active_in GO:0005762 PMID:12392552 IDA C mitochondrial 54S ribosomal protein YmL2 YNL005C|bL27m protein taxon:559292 20210521 SGD SGD:S000004950 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000005369 MDM12 is_active_in GO:0032865 PMID:13679517 IPI SGD:S000000008 C ERMES complex subunit MDM12 YOL009C protein taxon:559292 20220513 SGD SGD:S000005369 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000005369 MDM12 is_active_in GO:0032865 PMID:17410204 IPI SGD:S000000008 C ERMES complex subunit MDM12 YOL009C protein taxon:559292 20220513 SGD SGD:S000005369 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000005369 MDM12 is_active_in GO:0032865 PMID:17410204 IPI SGD:S000003929 C ERMES complex subunit MDM12 YOL009C protein taxon:559292 20220513 SGD SGD:S000005369 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000005474 PTH4 is_active_in GO:0005762 PMID:25683707 IDA C YOL114C protein taxon:559292 20221118 SGD SGD:S000005474 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000005705 SYC1 is_active_in GO:0005847 PMID:12819204 IDA C cleavage polyadenylation factor subunit SYC1 YOR179C protein taxon:559292 20210824 SGD SGD:S000005705 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000005896 RPS12 is_active_in GO:0022627 PMID:3533916 IDA C 40S ribosomal protein eS12 RPS12 YOR369C protein taxon:559292 20220826 SGD SGD:S000005896 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000005941 ULP1 is_active_in GO:0005643 PMID:12471376 IDA C SUMO protease ULP1 NIB1|YPL020C protein taxon:559292 20250508 SGD SGD:S000005941 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000006131 SRP72 is_active_in GO:0005786 PMID:7925282 IDA C signal recognition particle subunit SRP72 YPL210C protein taxon:559292 20210819 SGD SGD:S000006131 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000006337 SPN1 is_active_in GO:0005665 PMID:32941642 IMP C transcription factor SPN1 IWS1|YPR133C protein taxon:559292 20230127 SGD SGD:S000006337 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000028510 SUS1 is_active_in GO:0000124 PMID:14718168 IDA C YBR111W-A protein taxon:559292 20211122 SGD SGD:S000028510 `