GORULE violations assigned by rgd


Contents

gorule-0000001 GAF lines are parsed according to GAF 2.2 specifications

gorule-0000002 No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

gorule-0000013 Taxon-appropriate annotation check

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000022 Check for, and filter, annotations made to retracted publications

gorule-0000027 Each identifier in GAF is valid

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000055 References should have only one ID per ID space

gorule-0000061 Allowed gene product to term relations (gp2term)

gorule-0000063 Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)



MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.2 specifications

messages

gorule-0000002

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

messages

gorule-0000013

Taxon-appropriate annotation check

messages

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

messages

gorule-0000022

Check for, and filter, annotations made to retracted publications

messages

gorule-0000027

Each identifier in GAF is valid

messages