GORULE violations assigned by pombase

Contents

gorule-0000013 Taxon-appropriate annotation check

gorule-0000016 With/From: IC annotations require a With/From GO ID

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

MESSAGES

gorule-0000013

Taxon-appropriate annotation check

• total: 3

messages

• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB O42662 SPAC27D7.08c enables GO:0052907 GO_REF:0000024 ISO UniProtKB:P75782 F U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase SPAC27D7.08c protein taxon:284812 20161012 PomBase UniProtKB:O42662 `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB O43090 SPBC947.15c enables GO:0008137 GO_REF:0000024 ISO SGD:S000004589 F Probable NADH-ubiquinone oxidoreductase C947.15c, mitochondrial SPBC947.15c protein taxon:284812 20040507 PomBase UniProtKB:O43090 `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB Q9UTG5 SPAC1805.10 part_of GO:0035658 GO_REF:0000024 ISO SGD:S000000335 C Uncharacterized protein C1805.10 SPAC1805.10 protein taxon:284812 20240810 PomBase UniProtKB:Q9UTG5 `

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 9

messages

• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`UniProtKB O43035 atg3 involved_in GO:0000423 GO_REF:0000111 IC P Autophagy-related protein 3 atg3|SPBC3B9.06c protein taxon:284812 20250613 PomBase UniProtKB:O43035 `
• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`UniProtKB O94242 msd1 involved_in GO:0043038 GO_REF:0000111 IC P Aspartate--tRNA ligase, mitochondrial msd1|SPCC736.06 protein taxon:284812 20250414 PomBase UniProtKB:O94242 `
• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`UniProtKB O94649 atg2 involved_in GO:0000423 GO_REF:0000111 IC P Autophagy-related protein 2 atg2|mug36|SPBC31E1.01c|SPBC660.18c protein taxon:284812 20250613 PomBase UniProtKB:O94649 `
• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`UniProtKB Q9HDZ7 atg18 involved_in GO:0000423 GO_REF:0000111 IC P Autophagy-related protein 18 atg18|atg18a|SPAC589.07c protein taxon:284812 20250613 PomBase UniProtKB:Q9HDZ7 `
• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`UniProtKB Q9P3T7 SPAC328.09 enables GO:0000515 GO_REF:0000111 IC GO:0000515 F Probable mitochondrial 2-oxodicarboxylate carrier SPAC328.09 protein taxon:284812 20250318 PomBase UniProtKB:Q9P3T7 `
• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`UniProtKB Q9P3W2 hsv2 involved_in GO:0000423 GO_REF:0000111 IC P SVP1-like protein 2 hsv2|atg18c|SPAC458.06 protein taxon:284812 20250613 PomBase UniProtKB:Q9P3W2 `
• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`UniProtKB Q9P6N1 mug179 involved_in GO:0000423 GO_REF:0000111 IC P Autophagy-related protein 21 mug179|atg18b|SPAC823.16c protein taxon:284812 20250613 PomBase UniProtKB:Q9P6N1 `
• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`UniProtKB Q9US24 atg12 involved_in GO:0000423 GO_REF:0000111 IC P Ubiquitin-like protein ATG12 atg12|SPAC1783.06c protein taxon:284812 20250613 PomBase UniProtKB:Q9US24 `
• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`UniProtKB Q9UTB2 dia4 involved_in GO:0070127 GO_REF:0000024 IC P Serine--tRNA ligase, mitochondrial dia4|SPAC25B8.06c protein taxon:284812 20250312 PomBase UniProtKB:Q9UTB2 `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 10

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P36615 csk1 involved_in GO:0007165 PMID:10226032 IC GO:0019912 P Serine/threonine-protein kinase csk1 csk1|SPAC1D4.06c protein taxon:284812 20090506 PomBase UniProtKB:P36615 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q96WW6 alg2 involved_in GO:0043413 GO_REF:0000111 IC GO:0004378 P Alpha-1,3/1,6-mannosyltransferase alg2 alg2|SPBC11B10.01|SPBC32H8.14|pi010 protein taxon:284812 20050228 PomBase UniProtKB:Q96WW6 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q09859 mxr1 enables GO:0036456 PMID:24118096 IMP F Probable peptide methionine sulfoxide reductase mxr1|SPAC29E6.05c|SPAC30.09c protein taxon:284812 20131105 PomBase part_of(GO:0110052) UniProtKB:Q09859 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB O74754 atp3 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C ATP synthase subunit gamma, mitochondrial atp3|SPBC1734.13 protein taxon:284812 20240724 PomBase UniProtKB:O74754 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P22068 atp2 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C ATP synthase subunit beta, mitochondrial atp2|SPAC222.12c protein taxon:284812 20240724 PomBase UniProtKB:P22068 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P87316 atp15 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C Putative ATP synthase subunit epsilon, mitochondrial atp15|SPBC31F10.15c protein taxon:284812 20240724 PomBase UniProtKB:P87316 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q9P6R6 atp16 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C ATP synthase subunit delta, mitochondrial atp16|SPBC13E7.04 protein taxon:284812 20240724 PomBase UniProtKB:Q9P6R6 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q9P7D2 ppe1 involved_in GO:0030091 GO_REF:0000111 IC GO:0051722 P Protein phosphatase methylesterase 1 ppe1|SPBP4H10.17c protein taxon:284812 20180213 PomBase UniProtKB:Q9P7D2 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q9P7D2 ppe1 involved_in GO:1990748 GO_REF:0000111 IC GO:0051722 P Protein phosphatase methylesterase 1 ppe1|SPBP4H10.17c protein taxon:284812 20180213 PomBase UniProtKB:Q9P7D2 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q9P544 por1 involved_in GO:0098661 GO_REF:0000024 ISO SGD:S000005000 P Non-selective voltage-gated ion channel por1|SPAC1635.01 protein taxon:284812 20150122 PomBase UniProtKB:Q9P544 `