GORULE violations assigned by pombase

Contents

gorule-0000001 GAF lines are parsed according to GAF 2.2 specifications

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000011 ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

gorule-0000013 Taxon-appropriate annotation check

gorule-0000016 With/From: IC annotations require a With/From GO ID

gorule-0000018 IPI annotations require a With/From entry

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000027 Each identifier in GAF is valid

gorule-0000063 Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.2 specifications

• total: 76

messages

• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC1327.01c SPAC1327.01c enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, zf-fungal binuclear cluster type SPAC1783.09c|SPAC18G6.16c protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC139.03 toe2 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, zf-fungal binuclear cluster type Toe2 protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC13G7.10 teb1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Teb1 mug152|spX|tay1 protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC21E11.03c pcr1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Pcr1 mts2 protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC23C11.08 php3 enables GO:0000978 PMID:40015273 HDA F CCAAT-binding factor complex subunit Php3 protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC2H10.01 SPAC2H10.01 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, zf-fungal binuclear cluster type protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC32A11.03c phx1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, stationary phase-specific Phx1 protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC3G9.14 sak1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Sak1 protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC3H1.11 hsr1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Hsr1 msn2 protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC6F12.02 rst2 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, glucose starvation sensing, Rst2 protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC8C9.14 prr1 enables GO:0000978 PMID:40015273 HDA F stress-responsive DNA-binding transcription factor Prr1 protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC1289.10c adn2 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Adn2 protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC16G5.16 ntu1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, zf-fungal binuclear cluster type protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC27B12.11c pho7 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, phosphate starvation genes Pho7 protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC29B5.01 atf1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, Atf-CREB family Atf1 gad7|mts1|sss1 protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC530.05 prt1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Prt1 protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC530.08 ntu2 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, membrane-tethered protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPCC1494.10 adn3 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Adn3 SPCC70.01 protein taxon:4896 20250225 PomBase has_input(SPBC1685.12c) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC139.03 toe2 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, zf-fungal binuclear cluster type Toe2 protein taxon:4896 20250225 PomBase has_input(SPBC36.13) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC2E12.02 hsf1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Hsf1 hsf|hstf protein taxon:4896 20250225 PomBase has_input(SPBC36.13) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC6F12.02 rst2 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, glucose starvation sensing, Rst2 protein taxon:4896 20250225 PomBase has_input(SPBC36.13) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC1289.10c adn2 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Adn2 protein taxon:4896 20250225 PomBase has_input(SPBC36.13) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC530.05 prt1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Prt1 protein taxon:4896 20250225 PomBase has_input(SPBC36.13) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC16G5.17 SPBC16G5.17 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, zf-fungal binuclear cluster type protein taxon:4896 20250225 PomBase has_input(SPCC417.04) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC5D6.12 mtf2 contributes_to GO:0008494 PMID:34634819 EXP F mitochondrial translational activator Mtf2 ppr12 protein taxon:4896 20250331 PomBase has_input(SPMIT.01.1) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC5D6.12 mtf2 contributes_to GO:0008494 PMID:29458562 EXP F mitochondrial translational activator Mtf2 ppr12 protein taxon:4896 20180307 PomBase has_input(SPMIT.01.1) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC5D6.12 mtf2 enables GO:0008494 PMID:38499152 EXP F mitochondrial translational activator Mtf2 ppr12 protein taxon:4896 20250331 PomBase has_input(SPMIT.01.1),occurs_in(GO:0005759),part_of(GO:0070124) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC8C9.06c ppr4 contributes_to GO:0008494 PMID:34634819 EXP F mitochondrial PPR repeat protein, translation activator for Cox1 Ppr4 protein taxon:4896 20250331 PomBase has_input(SPMIT.01.1) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC8C9.06c ppr4 enables GO:0008494 PMID:38499152 EXP F mitochondrial PPR repeat protein, translation activator for Cox1 Ppr4 protein taxon:4896 20250331 PomBase has_input(SPMIT.01.1),occurs_in(GO:0005759),part_of(GO:0070124) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAP8A3.14c sls1 contributes_to GO:0008494 PMID:34634819 EXP F mitochondrial translational activator Sls1 protein taxon:4896 20250331 PomBase has_input(SPMIT.01.1) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAP8A3.14c sls1 enables GO:0008494 PMID:38499152 EXP F mitochondrial translational activator Sls1 protein taxon:4896 20250331 PomBase has_input(SPMIT.01.1),occurs_in(GO:0005759),part_of(GO:0070124) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC106.19 ppr10 enables GO:0008494 PMID:28334955 EXP F mitochondrial general translational activator, PPR repeat Ppr10 SPBC582.01|mpal10 protein taxon:4896 20170330 PomBase has_input(SPMIT.01.1),occurs_in(GO:0005759),part_of(GO:0070124) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC25D12.06 mrh5 contributes_to GO:0008494 PMID:34634819 EXP F mitochondrial translation ATP-dependent RNA helicase Mrh5 protein taxon:4896 20250331 PomBase has_input(SPMIT.01.1) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC25D12.06 mrh5 enables GO:0008494 PMID:38499152 EXP F mitochondrial translation ATP-dependent RNA helicase Mrh5 protein taxon:4896 20250331 PomBase has_input(SPMIT.01.1),occurs_in(GO:0005759),part_of(GO:0070124) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC106.19 ppr10 enables GO:0008494 PMID:28334955 EXP F mitochondrial general translational activator, PPR repeat Ppr10 SPBC582.01|mpal10 protein taxon:4896 20170330 PomBase has_input(SPMIT.04.1),occurs_in(GO:0005759),part_of(GO:0070124) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC106.19 ppr10 enables GO:0008494 PMID:28334955 EXP F mitochondrial general translational activator, PPR repeat Ppr10 SPBC582.01|mpal10 protein taxon:4896 20170330 PomBase has_input(SPMIT.05.1),occurs_in(GO:0005759),part_of(GO:0070124) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC8C9.06c ppr4 enables GO:0160134 PMID:38499152 EXP F mitochondrial PPR repeat protein, translation activator for Cox1 Ppr4 protein taxon:4896 20250206 PomBase has_input(GO:0005763),has_input(SPMIT.07.1),part_of(GO:0070124) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC106.19 ppr10 enables GO:0008494 PMID:28334955 EXP F mitochondrial general translational activator, PPR repeat Ppr10 SPBC582.01|mpal10 protein taxon:4896 20170330 PomBase has_input(SPMIT.07.1),occurs_in(GO:0005759),part_of(GO:0070124) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC106.19 ppr10 enables GO:0008494 PMID:28334955 EXP F mitochondrial general translational activator, PPR repeat Ppr10 SPBC582.01|mpal10 protein taxon:4896 20170330 PomBase has_input(SPMIT.08.1),occurs_in(GO:0005759),part_of(GO:0070124) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC106.19 ppr10 enables GO:0008494 PMID:28334955 EXP F mitochondrial general translational activator, PPR repeat Ppr10 SPBC582.01|mpal10 protein taxon:4896 20170330 PomBase has_input(SPMIT.09.1),occurs_in(GO:0005759),part_of(GO:0070124) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC106.19 ppr10 enables GO:0008494 PMID:28334955 EXP F mitochondrial general translational activator, PPR repeat Ppr10 SPBC582.01|mpal10 protein taxon:4896 20170330 PomBase has_input(SPMIT.10.1),occurs_in(GO:0005759),part_of(GO:0070124) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC106.19 ppr10 enables GO:0008494 PMID:28334955 EXP F mitochondrial general translational activator, PPR repeat Ppr10 SPBC582.01|mpal10 protein taxon:4896 20170330 PomBase has_input(SPMIT.11.1),occurs_in(GO:0005759),part_of(GO:0070124) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC1142.08 fhl1 enables GO:0000978 PMID:40015273 HDA F DNA-binding forkhead transcription factor for ribosomal proteins Fhl1 SPAC8C9.01 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.119) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC1B1.01 deb1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Deb1/Rdp1 rdp1 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.310) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC16G5.17 SPBC16G5.17 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, zf-fungal binuclear cluster type protein taxon:4896 20250225 PomBase has_input(SPNCRNA.310) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC22F3.09c res2 enables GO:0000978 PMID:40015273 HDA F MBF transcription factor complex subunit Res2 mcs1|pct1 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.325) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC336.12c cdc10 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, MBF transcription factor complex subunit Cdc10 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.325) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC725.16 res1 enables GO:0000978 PMID:40015273 HDA F MBF transcription factor complex subunit Res1 sct1 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.325) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC23C11.08 php3 enables GO:0000978 PMID:40015273 HDA F CCAAT-binding factor complex subunit Php3 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.341) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC16G5.15c fkh2 enables GO:0000978 PMID:40015273 HDA F DNA-binding forkhead transcription factor Fkh2 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.342) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC23E2.01 fep1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, zf-GATA type, iron-sensing Fep1 gaf2 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.490) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC3G9.14 sak1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Sak1 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.490) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC15D4.02 gsf1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, zf-fungal binuclear cluster type Gsf1 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.490) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC1142.08 fhl1 enables GO:0000978 PMID:40015273 HDA F DNA-binding forkhead transcription factor for ribosomal proteins Fhl1 SPAC8C9.01 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.508) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC23C11.08 php3 enables GO:0000978 PMID:40015273 HDA F CCAAT-binding factor complex subunit Php3 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.88) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC13G7.10 teb1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Teb1 mug152|spX|tay1 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.911) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC21E11.03c pcr1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Pcr1 mts2 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.911) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC23C11.08 php3 enables GO:0000978 PMID:40015273 HDA F CCAAT-binding factor complex subunit Php3 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.911) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC2E12.02 hsf1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Hsf1 hsf|hstf protein taxon:4896 20250225 PomBase has_input(SPNCRNA.911) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC32A11.03c phx1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, stationary phase-specific Phx1 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.911) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC3G9.14 sak1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Sak1 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.911) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC3H1.11 hsr1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Hsr1 msn2 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.911) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC56F8.16 esc1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, sexual differentiation inducing Esc1 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.911) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC1289.10c adn2 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Adn2 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.911) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC15D4.02 gsf1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, zf-fungal binuclear cluster type Gsf1 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.911) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC16G5.15c fkh2 enables GO:0000978 PMID:40015273 HDA F DNA-binding forkhead transcription factor Fkh2 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.911) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC27B12.11c pho7 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, phosphate starvation genes Pho7 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.911) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC29B5.01 atf1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, Atf-CREB family Atf1 gad7|mts1|sss1 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.911) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC4C3.12 sep1 enables GO:0000978 PMID:40015273 HDA F DNA-binding forkhead transcription factor Sep1 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.911) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPCC1494.10 adn3 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Adn3 SPCC70.01 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.911) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC1B1.01 deb1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Deb1/Rdp1 rdp1 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.99) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC23C11.08 php3 enables GO:0000978 PMID:40015273 HDA F CCAAT-binding factor complex subunit Php3 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.99) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPAC6F12.02 rst2 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, glucose starvation sensing, Rst2 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.99) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC1289.10c adn2 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor Adn2 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.99) `
• ERROR - Syntax error in annotation extension field:extensions should be relation(curie) and relation should have corresponding URI--`PomBase SPBC29B5.01 atf1 enables GO:0000978 PMID:40015273 HDA F DNA-binding transcription factor, Atf-CREB family Atf1 gad7|mts1|sss1 protein taxon:4896 20250225 PomBase has_input(SPNCRNA.99) `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`PomBase SPNCRNA.530 sno530 enables GO:0030563 PMID:37403782 EXP F small nucleolar RNA sno530 sncRNA taxon:4896 20230710 PomBase has_input(PomBase:SPSNRNA.06),part_of(GO:0016180) `

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 4

messages

• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`PomBase SPAC27F1.02c cdc8 involved_in GO:1904530 PMID:17452625 IDA P tropomyosin fus4 protein taxon:4896 20170811 PomBase `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`PomBase SPAC27F1.02c cdc8 enables GO:0098772 PMID:12796476 IDA F tropomyosin fus4 protein taxon:4896 20200317 PomBase has_input(PomBase:SPAC1F5.04c) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`PomBase SPAC637.12c mst1 enables GO:0034212 PMID:19915592 EXP F histone acetyltransferase, KAT5 family Mst1 kat5 protein taxon:4896 20240402 PomBase has_input(PomBase:SPBC11B10.10c) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`PomBase SPBC1778.06c fim1 involved_in GO:1904530 PMID:20705466 IDA P fimbrin protein taxon:4896 20170630 PomBase has_input(PomBase:SPAC27F1.02c) `

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

• total: 1

messages

• ERROR - Violates GO Rule:GORULE:0000011: ND annotations to root nodes only--`PomBase SPAC1F7.14c dmo2 enables GO:0003674 PMID:39932033 TAS F mitochondrial inner membrane protein chaperone/ protein-disulfide reductase, Dmo2 tam6 protein taxon:4896 20250212 PomBase has_input(PomBase:SPMIT.11) `

gorule-0000013

Taxon-appropriate annotation check

• total: 2

messages

• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC1805.10 ccz1 part_of GO:0035658 GO_REF:0000024 ISO SGD:S000000335 C Mon1-Ccz1 GEF complex subunit Ccz1 protein taxon:4896 20240810 PomBase `
• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`PomBase SPAC27D7.08c mtl16 enables GO:0052907 GO_REF:0000024 ISO UniProtKB:P75782 F 23S rRNA/U6 snRNA (adenine-N(6))-methyltransferase Mtl16 protein taxon:4896 20161012 PomBase `

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 4

messages

• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPAC25B8.06c dia4 involved_in GO:0070127 GO_REF:0000024 IC P mitochondrial serine-tRNA ligase protein taxon:4896 20250312 PomBase `
• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPAC328.09 odc1 enables GO:0000515 GO_REF:0000111 IC GO:0000515 F mitochondrial carrier, 2-oxoadipate/2-oxoglutarate protein taxon:4896 20250318 PomBase `
• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPATRNATYR.01 SPATRNATYR.01 enables GO:0033410 GO_REF:0000111 IC GO:0033410 F tRNA Tyrosine tRNA taxon:4896 20150206 PomBase `
• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPCC736.06 dar2 involved_in GO:0043038 GO_REF:0000111 IC P mitochondrial aspartate-tRNA ligase Dar2 protein taxon:4896 20250414 PomBase `

gorule-0000018

IPI annotations require a With/From entry

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000018: IPI annotations require a With/From entry--`PomBase SPAC1565.08 cdc48 enables GO:0031625 PMID:22086920 IPI F AAA family ATPase involved in ubiquitin-mediated protein degradation Cdc48 SPAC6F12.01|dsc6 protein taxon:4896 20120712 PomBase `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 5

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`PomBase SPMTR.01 mat2-Pc is_active_in GO:0005634 GO_REF:0000036 IC GO:0003677,GO:0036003 C silenced P-specific transcription factor Pc mat-Pc|mat2Pc|matPc protein taxon:4896 20150121 PomBase `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPAC222.12c atp2 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase beta subunit (central stalk) Atp2 protein taxon:4896 20240724 PomBase `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC13E7.04 atp16 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase delta subunit (central stalk) Atp16 protein taxon:4896 20240724 PomBase `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC1734.13 atp3 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase gamma subunit protein taxon:4896 20240724 PomBase `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`PomBase SPBC31F10.15c atp15 is_active_in GO:0099617 GO_REF:0000111 IC GO:0045269 C F1-FO ATP synthase epsilon subunit (central stalk) Atp15 protein taxon:4896 20240724 PomBase `

gorule-0000027

Each identifier in GAF is valid

• total: 3

messages

• WARNING - Invalid identifier:GORULE:0000027: 1913404 does not match any id_syntax patterns for MGI in dbxrefs--`PomBase SPAP14E8.05c SPAP14E8.05c is_active_in GO:0005743 GO_REF:0000024 ISO MGI:1913404 C mitochondrial protoporphyrinogen IX import factor, TMEM14 family protein taxon:4896 20250321 PomBase `
• WARNING - Invalid identifier:GORULE:0000027: 96112 does not match any id_syntax patterns for MGI in dbxrefs--`PomBase SPAC24B11.13 hem3 is_active_in GO:0005829 GO_REF:0000024 ISO MGI:96112 C hydroxymethylbilane synthase Hem3 SPAC806.01 protein taxon:4896 20250321 PomBase `
• WARNING - Invalid identifier:GORULE:0000027: PBQ not found in list of database names in dbxrefs--`PomBase SPBC3B8.10c nem1 is_active_in GO:0005634 PMID:30116786 IDA C serine/threonine protein phosphatase (Nem1-Spo7 complex) catalytic subunit Nem1 protein taxon:4896 20180828 PomBase existence_overlaps(PBQ:0000003) `

gorule-0000063

Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000063: Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)--`PomBase SPBC115.02c afg1 involved_in GO:0141164 GO_REF:0000024 ISO P mitochondrial AFG1 family ATPase/chaperone Afg1 protein taxon:4896 20241103 PomBase `