GORULE violations assigned by mgi

Contents

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000027 Each identifier in GAF is valid

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000061 Allowed gene product to term relations (gp2term)

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 12

messages

• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O14981 BTAF1 acts_upstream_of_or_within GO:0035562 PMID:23361013 IMP P TATA-binding protein-associated factor 172 BTAF1|TAF172 protein taxon:9606 20140627 MGI UniProtKB:O14981 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O95816 BAG2 acts_upstream_of_or_within GO:0019538 PMID:9873015 IDA P BAG family molecular chaperone regulator 2 BAG2 protein taxon:9606 20060110 MGI UniProtKB:O95816 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P01270 PTH acts_upstream_of_or_within GO:0009059 PMID:19723499 IDA P Parathyroid hormone PTH protein taxon:9606 20100721 MGI UniProtKB:P01270 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P06400 RB1 acts_upstream_of_or_within GO:2000679 PMID:25100735 IDA P Retinoblastoma-associated protein RB1 protein taxon:9606 20160330 MGI UniProtKB:P06400 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P12644 BMP4 acts_upstream_of_or_within GO:0032092 PMID:23610558 IDA P Bone morphogenetic protein 4 BMP4|BMP2B|DVR4 protein taxon:9606 20131218 MGI UniProtKB:P12644 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q12774 ARHGEF5 acts_upstream_of_or_within GO:0043087 PMID:21525037 IDA P Rho guanine nucleotide exchange factor 5 ARHGEF5|TIM protein taxon:9606 20120529 MGI UniProtKB:Q12774 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q5VTB9 RNF220 acts_upstream_of_or_within GO:2000677 PMID:32094113 IGI UniProtKB:Q9NQZ6 P E3 ubiquitin-protein ligase RNF220 RNF220|C1orf164 protein taxon:9606 20210810 MGI UniProtKB:Q5VTB9 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q6B0I6 KDM4D acts_upstream_of_or_within GO:0035563 PMID:24550317 IMP P Lysine-specific demethylase 4D KDM4D|JHDM3D|JMJD2D protein taxon:9606 20150819 MGI UniProtKB:Q6B0I6 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q96L73 NSD1 acts_upstream_of_or_within GO:1903025 PMID:20837538 IMP P Histone-lysine N-methyltransferase, H3 lysine-36 specific NSD1|ARA267|KMT3B protein taxon:9606 20150406 MGI UniProtKB:Q96L73 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9H8T0 AKTIP acts_upstream_of_or_within GO:0032092 PMID:14749367 IDA P AKT-interacting protein AKTIP|FTS protein taxon:9606 20091109 MGI UniProtKB:Q9H8T0 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9NQZ6 ZC4H2 acts_upstream_of_or_within GO:2000677 PMID:32094113 IGI UniProtKB:Q5VTB9 P Zinc finger C4H2 domain-containing protein ZC4H2|HCA127|KIAA1166 protein taxon:9606 20210805 MGI UniProtKB:Q9NQZ6 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9NXS2 QPCTL acts_upstream_of_or_within GO:0017186 PMID:18486145 IDA P Glutaminyl-peptide cyclotransferase-like protein QPCTL protein taxon:9606 20120315 MGI UniProtKB:Q9NXS2 `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 13

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q8IW19 APLF acts_upstream_of_or_within GO:0051106 PMID:21211721 IGI UniProtKB:Q9Y6F1 P Aprataxin and PNK-like factor APLF|C2orf13|PALF|XIP1 protein taxon:9606 20131119 MGI UniProtKB:Q8IW19 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q9Y6F1 PARP3 acts_upstream_of_or_within GO:0051106 PMID:21211721 IGI UniProtKB:Q8IW19 P Protein mono-ADP-ribosyltransferase PARP3 PARP3|ADPRT3|ADPRTL3 protein taxon:9606 20131119 MGI UniProtKB:Q9Y6F1 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P59046 NLRP12 acts_upstream_of_or_within GO:2000116 PMID:12019269 IDA P NACHT, LRR and PYD domains-containing protein 12 NLRP12|NALP12|PYPAF7|RNO protein taxon:9606 20140417 MGI UniProtKB:P59046 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O00291 HIP1 acts_upstream_of_or_within GO:2001056 PMID:11788820 IDA P Huntingtin-interacting protein 1 HIP1 protein taxon:9606 20060131 MGI UniProtKB:O00291 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O95150 TNFSF15 acts_upstream_of_or_within GO:2001056 PMID:11911831 IDA P Tumor necrosis factor ligand superfamily member 15 TNFSF15|TL1|VEGI protein taxon:9606 20030418 MGI UniProtKB:O95150 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P48023 FASLG acts_upstream_of_or_within GO:2001056 PMID:19364818 IGI UniProtKB:P18406 P Tumor necrosis factor ligand superfamily member 6 FASLG|APT1LG1|CD95L|FASL|TNFSF6 protein taxon:9606 20101222 MGI UniProtKB:P48023 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q70EL3 USP50 acts_upstream_of_or_within GO:2001056 PMID:28094437 IMP P Ubiquitin carboxyl-terminal hydrolase 50 USP50 protein taxon:9606 20180802 MGI UniProtKB:Q70EL3 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q9NWB7 IFT57 acts_upstream_of_or_within GO:2001056 PMID:11788820 IDA P Intraflagellar transport protein 57 homolog IFT57|DERP8|ESRRBL1|HIPPI protein taxon:9606 20030627 MGI UniProtKB:Q9NWB7 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q9Y239 NOD1 acts_upstream_of_or_within GO:2001056 PMID:10329646 IDA P Nucleotide-binding oligomerization domain-containing protein 1 NOD1|CARD4 protein taxon:9606 20101104 MGI UniProtKB:Q9Y239 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q9Y239 NOD1 acts_upstream_of_or_within GO:2001056 PMID:10329646 IDA P Nucleotide-binding oligomerization domain-containing protein 1 NOD1|CARD4 protein taxon:9606 20130715 MGI UniProtKB:Q9Y239 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q58WW2 DCAF6 enables GO:0030374 PMID:15784617 IDA F DDB1- and CUL4-associated factor 6 DCAF6|IQWD1|MSTP055 protein taxon:9606 20080814 MGI UniProtKB:Q58WW2 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q8IX12 CCAR1 enables GO:0030374 PMID:18722177 IGI UniProtKB:P03372 F Cell division cycle and apoptosis regulator protein 1 CCAR1|CARP1|DIS protein taxon:9606 20120320 MGI UniProtKB:Q8IX12 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q9BQA1 WDR77 enables GO:0030374 PMID:12972618 IGI UniProtKB:P10275 F Methylosome protein WDR77 WDR77|MEP50|WD45|HKMT1069|Nbla10071 protein taxon:9606 20090731 MGI UniProtKB:Q9BQA1 `

gorule-0000027

Each identifier in GAF is valid

• total: 17

messages

• WARNING - Invalid identifier:GORULE:0000027: 1316736 does not match any id_syntax patterns for MGI in dbxrefs--`UniProtKB O00255 MEN1 acts_upstream_of_or_within GO:0002076 PMID:15563473 IGI MGI:MGI:1316736 P Menin MEN1|SCG2 protein taxon:9606 20080226 MGI UniProtKB:O00255 `
• WARNING - Invalid identifier:GORULE:0000027: 1316736 does not match any id_syntax patterns for MGI in dbxrefs--`UniProtKB O00255 MEN1 acts_upstream_of_or_within GO:0045668 PMID:15563473 IGI MGI:MGI:1316736 P Menin MEN1|SCG2 protein taxon:9606 20080226 MGI UniProtKB:O00255 `
• WARNING - Invalid identifier:GORULE:0000027: 10047140 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305476 Mki67 located_in GO:0005634 PMID:12368262|RGD:10047140 IDA C marker of proliferation Ki-67 gene taxon:10116 20150326 MGI `
• WARNING - Invalid identifier:GORULE:0000027: 10047272 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304699 Naxe enables GO:0052856 PMID:24611804|RGD:10047272 IDA F NAD(P)HX epimerase gene taxon:10116 20150603 MGI `
• WARNING - Invalid identifier:GORULE:0000027: 10400858 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303307 Kif13b located_in GO:0005829 PMID:19587293|RGD:10400858 IDA C kinesin family member 13B gene taxon:10116 20150805 MGI `
• WARNING - Invalid identifier:GORULE:0000027: 10400858 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303307 Kif13b located_in GO:0005902 PMID:19587293|RGD:10400858 IDA C kinesin family member 13B gene taxon:10116 20150805 MGI `
• WARNING - Invalid identifier:GORULE:0000027: 10400858 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303307 Kif13b located_in GO:0033270 PMID:19587293|RGD:10400858 IDA C kinesin family member 13B gene taxon:10116 20150805 MGI `
• WARNING - Invalid identifier:GORULE:0000027: 10402041 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305747 Stat4 acts_upstream_of_or_within GO:0071345 PMID:19414010|RGD:10402041 IDA P signal transducer and activator of transcription 4 gene taxon:10116 20150915 MGI UniProtKB:A0A0G2JX93 `
• WARNING - Invalid identifier:GORULE:0000027: 10402041 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305747 Stat4 acts_upstream_of_or_within GO:0071407 PMID:19414010|RGD:10402041 IDA P signal transducer and activator of transcription 4 gene taxon:10116 20150915 MGI UniProtKB:A0A0G2JX93 `
• WARNING - Invalid identifier:GORULE:0000027: 11053432 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304751 Vps50 located_in GO:0055037 PMID:25799061|RGD:11053432 IDA C VPS50 subunit of EARP/GARPII complex gene taxon:10116 20160323 MGI `
• WARNING - Invalid identifier:GORULE:0000027: 11342276 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305323 Pla2g3 acts_upstream_of_or_within GO:0010629 PMID:26637123|RGD:11342276 IDA P phospholipase A2, group III gene taxon:10116 20210407 MGI `
• WARNING - Invalid identifier:GORULE:0000027: 126790483 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303302 Nrg2 enables GO:1990631 PMID:24218551|RGD:126790483 IDA F neuregulin 2 gene taxon:10116 20211122 MGI `
• WARNING - Invalid identifier:GORULE:0000027: 150521642 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304994 Cebpz part_of GO:0016602 PMID:8703044|RGD:150521642 IDA C CCAAT/enhancer binding protein zeta gene taxon:10116 20210601 MGI `
• WARNING - Invalid identifier:GORULE:0000027: 151356654 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303302 Nrg2 is_active_in GO:0005615 PMID:12466964|RGD:151356654 IDA C neuregulin 2 gene taxon:10116 20220114 MGI `
• WARNING - Invalid identifier:GORULE:0000027: 151356654 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303302 Nrg2 involved_in GO:0038130 PMID:12466964|RGD:151356654 IDA P neuregulin 2 gene taxon:10116 20211112 MGI `
• WARNING - Invalid identifier:GORULE:0000027: 151356654 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303302 Nrg2 enables GO:0048018 PMID:12466964|RGD:151356654 IDA F neuregulin 2 gene taxon:10116 20211112 MGI `
• WARNING - Invalid identifier:GORULE:0000027: 40902968 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303245 Rtn2 acts_upstream_of_or_within GO:0015031 PMID:18096700|RGD:40902968 IDA P reticulon 2 gene taxon:10116 20200924 MGI `

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

• total: 13

messages

• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB O14732 IMPA2 enables GO:0042803 PMID:17068342 IDA F Inositol monophosphatase 2 IMPA2|IMP.18P protein taxon:9606 20091009 MGI UniProtKB:O14732 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P20023 CR2 enables GO:0042803 PMID:11728339 IDA F Complement receptor type 2 CR2|C3DR protein taxon:9606 20110203 MGI UniProtKB:P20023 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P21266 GSTM3 enables GO:0042803 PMID:9545290 IDA F Glutathione S-transferase Mu 3 GSTM3|GST5 protein taxon:9606 20120716 MGI UniProtKB:P21266 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P29218 IMPA1 enables GO:0042803 PMID:17068342 IDA F Inositol monophosphatase 1 IMPA1|IMPA protein taxon:9606 20091009 MGI UniProtKB:P29218 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P51636 CAV2 enables GO:0042803 PMID:8552590 IDA F Caveolin-2 CAV2 protein taxon:9606 20101102 MGI UniProtKB:P51636 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P57052 RBM11 enables GO:0042803 PMID:21984414 IDA F Splicing regulator RBM11 RBM11 protein taxon:9606 20131209 MGI UniProtKB:P57052 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q13043 STK4 enables GO:0042803 PMID:11805089 IDA F Serine/threonine-protein kinase 4 STK4|KRS2|MST1 protein taxon:9606 20060707 MGI UniProtKB:Q13043 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q15517 CDSN enables GO:0042803 PMID:15086562 IDA F Corneodesmosin CDSN protein taxon:9606 20060111 MGI UniProtKB:Q15517 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q16760 DGKD enables GO:0042803 PMID:12200442 IDA F Diacylglycerol kinase delta DGKD|KIAA0145 protein taxon:9606 20060131 MGI UniProtKB:Q16760 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q70YC4 ZNF365 enables GO:0042803 PMID:16617106 IDA F Talanin ZNF365|KIAA0844 protein taxon:9606 20151028 MGI UniProtKB:Q70YC4 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q96C23 GALM NOT|enables GO:0042803 PMID:12753898 IDA F Galactose mutarotase GALM|BLOCK25 protein taxon:9606 20191114 MGI UniProtKB:Q96C23 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q96Q42 ALS2 acts_upstream_of_or_within GO:0051260 PMID:15247254 IDA P Alsin ALS2|ALS2CR6|KIAA1563 protein taxon:9606 20191112 MGI UniProtKB:Q96Q42 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB O57337 HES1 enables GO:0042803 PMID:11076679 IDA F Transcription factor HES-1 HES1|HAIRY1 protein taxon:9031 20151105 MGI UniProtKB:O57337 `

gorule-0000061

Allowed gene product to term relations (gp2term)

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002325, RO:0002432. Repaired to RO:0001025--`UniProtKB Q15049 MLC1 part_of GO:0005886 PMID:21419380 IDA C Membrane protein MLC1 MLC1|KIAA0027|WKL1 protein taxon:9606 20240719 MGI part_of(CL:0000127) UniProtKB:Q15049 `