GORULE violations assigned by cgd


Contents

gorule-0000006 GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology

gorule-0000008 GORULE:0000008: No annotations should be made to uninformatively high level terms

gorule-0000013 GORULE:0000013: Taxon-appropriate annotation check

gorule-0000020 Violates GORULE:0000020

gorule-0000029 GORULE:0000029: All IEAs over a year are warned, all IEAs over three are removed

gorule-0000046 GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms

gorule-0000051 GORULE:0000051: Some GO terms require a value in the Annotation Extension field

gorule-0000059 GORULE:0000059 Upgrading qualifier/relation to RO:0002264 when reading GAF 2.1

gorule-0000061 GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of RO:0002432



MESSAGES

gorule-0000006

GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology

messages

gorule-0000008

GORULE:0000008: No annotations should be made to uninformatively high level terms

messages