GORULE violations assigned by UniProt


Contents

gorule-0000001 GAF lines are parsed according to GAF 2.2 specifications

gorule-0000002 No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

gorule-0000005 IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000013 Taxon-appropriate annotation check

gorule-0000015 Dual species taxon check

gorule-0000016 With/From: IC annotations require a With/From GO ID

gorule-0000018 IPI annotations require a With/From entry

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000027 Each identifier in GAF is valid

gorule-0000028 GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000050 Annotations to ISS, ISA and ISO should not be self-referential

gorule-0000061 Allowed gene product to term relations (gp2term)

gorule-0000063 Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)



MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.2 specifications

messages

gorule-0000002

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

messages

gorule-0000005

IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''

messages

gorule-0000008

No annotations should be made to uninformative high level terms

messages

gorule-0000013

Taxon-appropriate annotation check

messages

gorule-0000015

Dual species taxon check

messages

gorule-0000016

With/From: IC annotations require a With/From GO ID

messages

gorule-0000018

IPI annotations require a With/From entry

messages

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

messages

gorule-0000027

Each identifier in GAF is valid

messages

gorule-0000028

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

messages

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

messages

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

messages

gorule-0000061

Allowed gene product to term relations (gp2term)

messages

gorule-0000063

Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

messages