GORULE violations assigned by SynGO

Contents

gorule-0000006 IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

gorule-0000013 Taxon-appropriate annotation check

gorule-0000027 Each identifier in GAF is valid

MESSAGES

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

• total: 20

messages

• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`FB FBgn0000346 comt is_active_in GO:0099523 PMID:25953899 IEP C comatose CG 1618|CG1618|Comatose|Comt|DmNSF|N-Ethylmaleimide-sensitive Factor|N-ethyl-maleimide sensitive fusion protein|N-ethylmaleimide-sensitive factor 1|N-ethylmaleimide-sensitive fusion protein|NEM-sensitive fusion protein|NSF|NSF 1|NSF-1|NSF1|Nsf|Nsf1|com|dNSF|dNSF-1|dNSF1|dNsf1|dnsf1 protein taxon:7227 20240306 SynGO `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`FB FBgn0000346 comt is_active_in GO:0031594 PMID:25953899 IEP C comatose CG 1618|CG1618|Comatose|Comt|DmNSF|N-Ethylmaleimide-sensitive Factor|N-ethyl-maleimide sensitive fusion protein|N-ethylmaleimide-sensitive factor 1|N-ethylmaleimide-sensitive fusion protein|NEM-sensitive fusion protein|NSF|NSF 1|NSF-1|NSF1|Nsf|Nsf1|com|dNSF|dNSF-1|dNSF1|dNsf1|dnsf1 protein taxon:7227 20240306 SynGO `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB O75052 NOS1AP is_active_in GO:0098978 PMID:26869880 IEP C Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein NOS1AP|CAPON|KIAA0464 protein taxon:9606 20240306 SynGO part_of(UBERON:0002421) UniProtKB:O75052 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB O75962 TRIO is_active_in GO:0048786 PMID:27907191 IEP C Triple functional domain protein TRIO protein taxon:9606 20240306 SynGO part_of(UBERON:0002421) UniProtKB:O75962 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P02649 APOE is_active_in GO:0043083 PMID:22637583 IEP C Apolipoprotein E APOE protein taxon:9606 20240306 SynGO part_of(GO:0098978),part_of(UBERON:0000956) UniProtKB:P02649 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P02649 APOE is_active_in GO:0098978 PMID:22637583 IEP C Apolipoprotein E APOE protein taxon:9606 20240306 SynGO part_of(UBERON:0000956) UniProtKB:P02649 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P35125 USP6 is_active_in GO:0098978 PMID:31841517 IEP C Ubiquitin carboxyl-terminal hydrolase 6 USP6|HRP1|TRE2 protein taxon:9606 20240306 SynGO part_of(UBERON:0002421) UniProtKB:P35125 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P35125 USP6 is_active_in GO:0099092 PMID:31841517 IEP C Ubiquitin carboxyl-terminal hydrolase 6 USP6|HRP1|TRE2 protein taxon:9606 20240306 SynGO part_of(GO:0098978),part_of(UBERON:0002421) UniProtKB:P35125 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P42858 HTT is_active_in GO:0099523 PMID:7748555 IEP C Huntingtin HTT|HD|IT15 protein taxon:9606 20240306 SynGO part_of(UBERON:0000956) UniProtKB:P42858 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P51790 CLCN3 is_active_in GO:0030672 PMID:11182090 IEP C H(+)/Cl(-) exchange transporter 3 CLCN3 protein taxon:9606 20240306 SynGO part_of(GO:0098978),part_of(UBERON:0000955) UniProtKB:P51790 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P51790 CLCN3 is_active_in GO:0030672 PMID:11182090 IEP C H(+)/Cl(-) exchange transporter 3 CLCN3 protein taxon:9606 20240306 SynGO part_of(GO:0098982),part_of(UBERON:0000955) UniProtKB:P51790 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P51790 CLCN3 is_active_in GO:0030672 PMID:11182090 IEP C H(+)/Cl(-) exchange transporter 3 CLCN3 protein taxon:9606 20240306 SynGO part_of(UBERON:0002421) UniProtKB:P51790 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P51790 CLCN3 is_active_in GO:0098978 PMID:11182090 IEP C H(+)/Cl(-) exchange transporter 3 CLCN3 protein taxon:9606 20240306 SynGO part_of(UBERON:0000955) UniProtKB:P51790 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P51790 CLCN3 is_active_in GO:0098982 PMID:11182090 IEP C H(+)/Cl(-) exchange transporter 3 CLCN3 protein taxon:9606 20240306 SynGO part_of(UBERON:0000955) UniProtKB:P51790 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q13526 PIN1 is_active_in GO:0098978 PMID:28458925 IEP C Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 PIN1 protein taxon:9606 20240306 SynGO part_of(UBERON:0000956) UniProtKB:Q13526 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q13526 PIN1 is_active_in GO:0099524 PMID:28458925 IEP C Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 PIN1 protein taxon:9606 20240306 SynGO part_of(GO:0098978),part_of(UBERON:0000956) UniProtKB:Q13526 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q8N6T3 ARFGAP1 is_active_in GO:0045202 PMID:22423108 IEP C ADP-ribosylation factor GTPase-activating protein 1 ARFGAP1|ARF1GAP protein taxon:9606 20240306 SynGO part_of(UBERON:0000955) UniProtKB:Q8N6T3 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q96LT7 C9orf72 is_active_in GO:0099523 PMID:30075745 IEP C Guanine nucleotide exchange factor C9orf72 C9orf72|DENND9|DENNL72 protein taxon:9606 20240306 SynGO UniProtKB:Q96LT7 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q9ULW5 RAB26 is_active_in GO:0030672 PMID:25643395 IEP C Ras-related protein Rab-26 RAB26 protein taxon:9606 20240306 SynGO part_of(UBERON:0002421) UniProtKB:Q9ULW5 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P10096 GAPDH is_active_in GO:0098850 PMID:12488440 IEP C Glyceraldehyde-3-phosphate dehydrogenase GAPDH|GAPD protein taxon:9913 20240306 SynGO part_of(UBERON:0001869) UniProtKB:P10096 `

gorule-0000013

Taxon-appropriate annotation check

• total: 2

messages

• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB O73706 CACNA1B is_active_in GO:0044305 PMID:7993621 EXP C Voltage-dependent N-type calcium channel subunit alpha-1B CACNA1B protein taxon:9031 20240306 SynGO UniProtKB:O73706 `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB O73706 CACNA1B is_active_in GO:0044305 PMID:7993621 IDA C Voltage-dependent N-type calcium channel subunit alpha-1B CACNA1B protein taxon:9031 20240306 SynGO UniProtKB:O73706 `

gorule-0000027

Each identifier in GAF is valid

• total: 32

messages

• WARNING - Invalid identifier:GORULE:0000027: 155230707 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303243 Sptb is_active_in GO:0098794 PMID:11454415|RGD:155230707 IDA C spectrin, beta, erythrocytic gene taxon:10116 20240306 SynGO part_of(GO:0098978),part_of(UBERON:0002421) `
• WARNING - Invalid identifier:GORULE:0000027: 155230707 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303243 Sptb is_active_in GO:0098978 PMID:11454415|RGD:155230707 IDA C spectrin, beta, erythrocytic gene taxon:10116 20240306 SynGO part_of(UBERON:0002421) UniProtKB:A0A140UHX6 `
• WARNING - Invalid identifier:GORULE:0000027: 405650212 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305107 Srpk2 is_active_in GO:0098793 PMID:31671734|RGD:405650212 IDA C SRSF protein kinase 2 gene taxon:10116 20240306 SynGO part_of(UBERON:0002421) UniProtKB:A0A0G2JX62 `
• WARNING - Invalid identifier:GORULE:0000027: 405650241 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303209 Pcdh7 is_active_in GO:0014069 PMID:32616769|RGD:405650241 IDA C protocadherin 7 gene taxon:10116 20240306 SynGO part_of(UBERON:0002421) UniProtKB:A0A8I5ZPK7 `
• WARNING - Invalid identifier:GORULE:0000027: 405650241 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303209 Pcdh7 is_active_in GO:0014069 PMID:32616769|RGD:405650241 IMP C protocadherin 7 gene taxon:10116 20240306 SynGO part_of(UBERON:0002421) UniProtKB:A0A8I5ZPK7 `
• WARNING - Invalid identifier:GORULE:0000027: 405650241 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303209 Pcdh7 is_active_in GO:0098978 PMID:32616769|RGD:405650241 IDA C protocadherin 7 gene taxon:10116 20240306 SynGO part_of(UBERON:0002421) `
• WARNING - Invalid identifier:GORULE:0000027: 405650241 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303209 Pcdh7 is_active_in GO:0098978 PMID:32616769|RGD:405650241 IMP C protocadherin 7 gene taxon:10116 20240306 SynGO part_of(UBERON:0002421) UniProtKB:A0A8I6AHU7 `
• WARNING - Invalid identifier:GORULE:0000027: 405650241 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303209 Pcdh7 involved_in GO:0150052 PMID:32616769|RGD:405650241 IDA P protocadherin 7 gene taxon:10116 20240306 SynGO occurs_in(GO:0098978),occurs_in(UBERON:0002421) UniProtKB:A6IJE8 `
• WARNING - Invalid identifier:GORULE:0000027: 405650241 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303209 Pcdh7 involved_in GO:0150052 PMID:32616769|RGD:405650241 IMP P protocadherin 7 gene taxon:10116 20240306 SynGO occurs_in(GO:0098978),occurs_in(UBERON:0002421) UniProtKB:A0A8I5ZPK7 `
• WARNING - Invalid identifier:GORULE:0000027: 405650278 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304566 Igsf9 involved_in GO:0090128 PMID:15340156|RGD:405650278 IDA P immunoglobulin superfamily, member 9 gene taxon:10116 20240306 SynGO occurs_in(GO:0098978),occurs_in(UBERON:0002421) `
• WARNING - Invalid identifier:GORULE:0000027: 405650278 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304566 Igsf9 involved_in GO:0090128 PMID:15340156|RGD:405650278 IMP P immunoglobulin superfamily, member 9 gene taxon:10116 20240306 SynGO occurs_in(GO:0098978),occurs_in(UBERON:0002421) `
• WARNING - Invalid identifier:GORULE:0000027: 405650278 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304566 Igsf9 is_active_in GO:0098839 PMID:15340156|RGD:405650278 IDA C immunoglobulin superfamily, member 9 gene taxon:10116 20240306 SynGO part_of(GO:0098978),part_of(UBERON:0002421) `
• WARNING - Invalid identifier:GORULE:0000027: 405650278 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304566 Igsf9 is_active_in GO:0098978 PMID:15340156|RGD:405650278 IDA C immunoglobulin superfamily, member 9 gene taxon:10116 20240306 SynGO part_of(UBERON:0002421) `
• WARNING - Invalid identifier:GORULE:0000027: 405650278 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304566 Igsf9 is_active_in GO:0098978 PMID:15340156|RGD:405650278 IMP C immunoglobulin superfamily, member 9 gene taxon:10116 20240306 SynGO part_of(UBERON:0002421) `
• WARNING - Invalid identifier:GORULE:0000027: 405650295 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305126 Kif21a involved_in GO:0008089 PMID:22442075|RGD:405650295 IDA P kinesin family member 21A gene taxon:10116 20240306 SynGO occurs_in(UBERON:0002421) UniProtKB:D4ADI4 `
• WARNING - Invalid identifier:GORULE:0000027: 405650295 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305126 Kif21a involved_in GO:0008089 PMID:22442075|RGD:405650295 IMP P kinesin family member 21A gene taxon:10116 20240306 SynGO occurs_in(UBERON:0002421) UniProtKB:A0A8I6AEJ5 `
• WARNING - Invalid identifier:GORULE:0000027: 405650295 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305126 Kif21a is_active_in GO:0098793 PMID:22442075|RGD:405650295 IDA C kinesin family member 21A gene taxon:10116 20240306 SynGO part_of(UBERON:0002421) UniProtKB:D3ZYN2 `
• WARNING - Invalid identifier:GORULE:0000027: 405650295 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305126 Kif21a is_active_in GO:0098793 PMID:22442075|RGD:405650295 IMP C kinesin family member 21A gene taxon:10116 20240306 SynGO part_of(UBERON:0002421) UniProtKB:D3ZYN2 `
• WARNING - Invalid identifier:GORULE:0000027: 405650326 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303187 Phactr1 is_active_in GO:0098978 PMID:32975518|RGD:405650326 IDA C phosphatase and actin regulator 1 gene taxon:10116 20240306 SynGO part_of(UBERON:0002421) `
• WARNING - Invalid identifier:GORULE:0000027: 405650326 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303187 Phactr1 is_active_in GO:0098978 PMID:32975518|RGD:405650326 IMP C phosphatase and actin regulator 1 gene taxon:10116 20240306 SynGO part_of(UBERON:0002421) `
• WARNING - Invalid identifier:GORULE:0000027: 405650326 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303187 Phactr1 involved_in GO:0099159 PMID:32975518|RGD:405650326 IDA P phosphatase and actin regulator 1 gene taxon:10116 20240306 SynGO occurs_in(GO:0098978),occurs_in(UBERON:0002421) `
• WARNING - Invalid identifier:GORULE:0000027: 405650326 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303187 Phactr1 involved_in GO:0099159 PMID:32975518|RGD:405650326 IMP P phosphatase and actin regulator 1 gene taxon:10116 20240306 SynGO occurs_in(GO:0098978),occurs_in(UBERON:0002421) `
• WARNING - Invalid identifier:GORULE:0000027: 405650331 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305267 Arhgap32 is_active_in GO:0014069 PMID:12531901|RGD:405650331 IDA C Rho GTPase activating protein 32 gene taxon:10116 20240306 SynGO part_of(GO:0098978),part_of(UBERON:0002421) UniProtKB:A0A8I5Y6H2 `
• WARNING - Invalid identifier:GORULE:0000027: 405650331 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305267 Arhgap32 is_active_in GO:0098978 PMID:12531901|RGD:405650331 IDA C Rho GTPase activating protein 32 gene taxon:10116 20240306 SynGO part_of(UBERON:0002421) UniProtKB:A0A8I5Y6H2 `
• WARNING - Invalid identifier:GORULE:0000027: 405650348 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304873 Mrtfa is_active_in GO:0098793 PMID:29335431|RGD:405650348 IDA C myocardin related transcription factor A gene taxon:10116 20240306 SynGO part_of(GO:0098978),part_of(UBERON:0000956) UniProtKB:F1LVR8 `
• WARNING - Invalid identifier:GORULE:0000027: 405650348 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304873 Mrtfa is_active_in GO:0098794 PMID:29335431|RGD:405650348 IDA C myocardin related transcription factor A gene taxon:10116 20240306 SynGO part_of(GO:0098978),part_of(UBERON:0000956) UniProtKB:A0A0G2JXC5 `
• WARNING - Invalid identifier:GORULE:0000027: 405650348 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304873 Mrtfa is_active_in GO:0098978 PMID:29335431|RGD:405650348 IDA C myocardin related transcription factor A gene taxon:10116 20240306 SynGO part_of(UBERON:0000956) `
• WARNING - Invalid identifier:GORULE:0000027: 405650348 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304873 Mrtfa is_active_in GO:0098978 PMID:29335431|RGD:405650348 IMP C myocardin related transcription factor A gene taxon:10116 20240306 SynGO part_of(UBERON:0002421) UniProtKB:A0A8I6AI47 `
• WARNING - Invalid identifier:GORULE:0000027: 405650348 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304873 Mrtfa involved_in GO:0099159 PMID:29335431|RGD:405650348 IDA P myocardin related transcription factor A gene taxon:10116 20240306 SynGO occurs_in(GO:0098978),occurs_in(UBERON:0000956) UniProtKB:A0A8I5Y4Q9 `
• WARNING - Invalid identifier:GORULE:0000027: 405650348 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304873 Mrtfa involved_in GO:0099159 PMID:29335431|RGD:405650348 IMP P myocardin related transcription factor A gene taxon:10116 20240306 SynGO occurs_in(GO:0098978),occurs_in(UBERON:0002421) UniProtKB:A0A0G2JXC5 `
• WARNING - Invalid identifier:GORULE:0000027: 405650377 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305119 Daam1 is_active_in GO:0045202 PMID:18832009|RGD:405650377 IDA C dishevelled associated activator of morphogenesis 1 gene taxon:10116 20240306 SynGO part_of(GO:0098978),part_of(UBERON:0002421) UniProtKB:A0A8I5Y0A6 `
• WARNING - Invalid identifier:GORULE:0000027: 405650377 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305119 Daam1 is_active_in GO:0098978 PMID:18832009|RGD:405650377 IDA C dishevelled associated activator of morphogenesis 1 gene taxon:10116 20240306 SynGO part_of(UBERON:0002421) `