GORULE violations assigned by ParkinsonsUK-UCL

Contents

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000061 Allowed gene product to term relations (gp2term)

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 37

messages

• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:98958 Wnt5a involved_in GO:0032092 PMID:23109420 IDA P Protein Wnt-5a protein taxon:10090 20170410 ParkinsonsUK-UCL has_input(UniProtKB:Q13009),part_of(GO:0016055),occurs_in(CL:0000700)|has_input(UniProtKB:Q92997),part_of(GO:0016055),occurs_in(CL:0000700) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:99441 Ckmt1 involved_in GO:0032091 PMID:21370995 IDA P Creatine kinase U-type, mitochondrial protein taxon:10090 20140728 ParkinsonsUK-UCL has_input(UniProtKB:P21796),has_input(UniProtKB:P12236) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1914740 Ufl1 involved_in GO:0032092 PMID:21494687 TAS P E3 UFM1-protein ligase 1 protein taxon:10090 20161103 ParkinsonsUK-UCL has_input(UniProtKB:P61961),has_input(UniProtKB:Q80WW9) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1920431 Nfatc4 involved_in GO:0032091 PMID:21880741 IDA P Nuclear factor of activated T-cells, cytoplasmic 4 protein taxon:10090 20151214 ParkinsonsUK-UCL has_input(UniProtKB:P51141),has_input(UniProtKB:Q02248),part_of(GO:0030178) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1920431 Nfatc4 involved_in GO:0032091 PMID:21880741 IDA P Nuclear factor of activated T-cells, cytoplasmic 4 protein taxon:10090 20170410 ParkinsonsUK-UCL has_input(UniProtKB:Q61062),occurs_in(GO:0005634),part_of(GO:0030178)|has_input(UniProtKB:Q02248),occurs_in(GO:0005634),part_of(GO:0030178) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1891731 Stub1 involved_in GO:0032091 PMID:12150907 IDA P E3 ubiquitin-protein ligase CHIP protein taxon:10090 20140813 ParkinsonsUK-UCL part_of(GO:0031398) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O15371 EIF3D involved_in GO:1902416 PMID:24092755 IPI UniProtKB:P60228,UniProtKB:Q04637,UniProtKB:Q99613 P Eukaryotic translation initiation factor 3 subunit D EIF3D|EIF3S7 protein taxon:9606 20161031 ParkinsonsUK-UCL has_input(UniProtKB:Q04637) UniProtKB:O15371 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O60260 PRKN involved_in GO:0032092 PMID:26911690 IMP P E3 ubiquitin-protein ligase parkin PRKN|PARK2 protein taxon:9606 20160921 ParkinsonsUK-UCL has_input(UniProtKB:Q96NA2),has_input(UniProtKB:P51149) UniProtKB:O60260 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O60260 PRKN involved_in GO:0043388 PMID:17314283 IDA P E3 ubiquitin-protein ligase parkin PRKN|PARK2 protein taxon:9606 20140903 ParkinsonsUK-UCL UniProtKB:O60260 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O75146 HIP1R involved_in GO:0032092 PMID:19255499 IDA P Huntingtin-interacting protein 1-related protein HIP1R|HIP12|KIAA0655 protein taxon:9606 20160915 ParkinsonsUK-UCL has_input(UniProtKB:Q9HD36),has_input(UniProtKB:P55211) UniProtKB:O75146 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O94907 DKK1 involved_in GO:0032091 PMID:20093360 IDA P Dickkopf-related protein 1 DKK1|UNQ492/PRO1008 protein taxon:9606 20170410 ParkinsonsUK-UCL has_input(UniProtKB:O75581)|has_input(UniProtKB:O14905)|has_input(UniProtKB:P56704)|part_of(GO:1904723) UniProtKB:O94907 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O95295 SNAPIN involved_in GO:0043393 PMID:23949442 IMP P SNARE-associated protein Snapin SNAPIN|BLOC1S7|SNAP25BP|SNAPAP protein taxon:9606 20140326 ParkinsonsUK-UCL has_input(UniProtKB:P21707),occurs_in(UBERON:0000955) UniProtKB:O95295 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P17861 XBP1 involved_in GO:0006996 PMID:22013210 TAS P X-box-binding protein 1 XBP1|TREB5|XBP2 protein taxon:9606 20150129 ParkinsonsUK-UCL part_of(GO:0034976) UniProtKB:P17861-2 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P21675 TAF1 involved_in GO:0032092 PMID:17237821 IDA P Transcription initiation factor TFIID subunit 1 TAF1|BA2R|CCG1|CCGS|TAF2A protein taxon:9606 20161005 ParkinsonsUK-UCL has_input(UniProtKB:Q00987),has_input(UniProtKB:P04637) UniProtKB:P21675 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P23560 BDNF involved_in GO:1900122 PMID:12130635 IDA P Brain-derived neurotrophic factor BDNF protein taxon:9606 20161027 ParkinsonsUK-UCL has_input(UniProtKB:P46459) UniProtKB:P23560 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P49674 CSNK1E involved_in GO:0032091 PMID:23109420 IDA P Casein kinase I isoform epsilon CSNK1E protein taxon:9606 20151208 ParkinsonsUK-UCL has_input(UniProtKB:Q13009),has_input(UniProtKB:Q92997) UniProtKB:P49674 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P55061 TMBIM6 involved_in GO:0032091 PMID:19328063 IDA P Bax inhibitor 1 TMBIM6|BI1|TEGT protein taxon:9606 20150201 ParkinsonsUK-UCL has_input(UniProtKB:O75460),has_input(UniProtKB:Q16611)|has_input(UniProtKB:O75460),has_input(UniProtKB:Q07812) UniProtKB:P55061 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P60228 EIF3E involved_in GO:1902416 PMID:24092755 IPI UniProtKB:O15371,UniProtKB:Q04637,UniProtKB:Q99613 P Eukaryotic translation initiation factor 3 subunit E EIF3E|EIF3S6|INT6 protein taxon:9606 20161031 ParkinsonsUK-UCL has_input(UniProtKB:Q04637) UniProtKB:P60228 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P78344 EIF4G2 involved_in GO:0009059 PMID:18426977 IGI UniProtKB:Q04637 P Eukaryotic translation initiation factor 4 gamma 2 EIF4G2|DAP5|OK/SW-cl.75 protein taxon:9606 20161007 ParkinsonsUK-UCL has_input(UniProtKB:P06730) UniProtKB:P78344 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q04637 EIF4G1 involved_in GO:0009059 PMID:18426977 IGI UniProtKB:P78344 P Eukaryotic translation initiation factor 4 gamma 1 EIF4G1|EIF4F|EIF4G|EIF4GI protein taxon:9606 20161007 ParkinsonsUK-UCL has_input(UniProtKB:P06730) UniProtKB:Q04637 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q04637 EIF4G1 involved_in GO:1905612 PMID:23409027 IDA P Eukaryotic translation initiation factor 4 gamma 1 EIF4G1|EIF4F|EIF4G|EIF4GI protein taxon:9606 20161028 ParkinsonsUK-UCL has_input(UniProtKB:Q9UKV8),causally_upstream_of(GO:0035278) UniProtKB:Q04637 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q13009 TIAM1 involved_in GO:0032092 PMID:23109420 IDA P Rho guanine nucleotide exchange factor TIAM1 TIAM1 protein taxon:9606 20151208 ParkinsonsUK-UCL has_input(UniProtKB:P63000),has_input(UniProtKB:O14641),part_of(GO:2000050) UniProtKB:Q13009 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q13526 PIN1 involved_in GO:0032091 PMID:11533658 IDA P Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 PIN1 protein taxon:9606 20160114 ParkinsonsUK-UCL has_input(UniProtKB:P25054),has_input(UniProtKB:P35222) UniProtKB:Q13526 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q5S007 LRRK2 involved_in GO:0032091 PMID:23949442 IMP P Leucine-rich repeat serine/threonine-protein kinase 2 LRRK2|PARK8 protein taxon:9606 20140326 ParkinsonsUK-UCL has_input(UniProtKB:P60879),has_input(UniProtKB:Q9Z266),occurs_in(UBERON:0000955) UniProtKB:Q5S007 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q5S007 LRRK2 involved_in GO:0032092 PMID:21370995 IDA P Leucine-rich repeat serine/threonine-protein kinase 2 LRRK2|PARK8 protein taxon:9606 20140728 ParkinsonsUK-UCL has_input(UniProtKB:P21796),has_input(UniProtKB:P12236) UniProtKB:Q5S007 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q96D46 NMD3 involved_in GO:0032092 PMID:12724356 IMP P 60S ribosomal export protein NMD3 NMD3|CGI-07 protein taxon:9606 20170626 ParkinsonsUK-UCL has_input(UniProtKB:O14980),has_input(UniProtKB:P62826) UniProtKB:Q96D46 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q96HY6 DDRGK1 involved_in GO:1905636 PMID:23675531 IMP P DDRGK domain-containing protein 1 DDRGK1|C20orf116|UFBP1 protein taxon:9606 20161103 ParkinsonsUK-UCL has_input(UniProtKB:Q04206) UniProtKB:Q96HY6 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q99497 PARK7 involved_in GO:0032091 PMID:15983381 IGI UniProtKB:Q99683|UniProtKB:Q9UER7 P Parkinson disease protein 7 PARK7 protein taxon:9606 20140514 ParkinsonsUK-UCL has_input(UniProtKB:Q9UER7),has_input(UniProtKB:Q99683) UniProtKB:Q99497 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q99497 PARK7 involved_in GO:0032091 PMID:16731528 IDA P Parkinson disease protein 7 PARK7 protein taxon:9606 20140714 ParkinsonsUK-UCL has_input(UniProtKB:Q13547),has_input(UniProtKB:P23246) UniProtKB:Q99497 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q99497 PARK7 involved_in GO:0032091 PMID:17015834 IDA P Parkinson disease protein 7 PARK7 protein taxon:9606 20140911 ParkinsonsUK-UCL has_input(UniProtKB:Q14145),has_input(UniProtKB:Q16236) UniProtKB:Q99497 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q99497 PARK7 involved_in GO:0032091 PMID:21785459 IMP P Parkinson disease protein 7 PARK7 protein taxon:9606 20140529 ParkinsonsUK-UCL has_input(UniProtKB:Q13158),has_input(UniProtKB:Q14790)|has_input(UniProtKB:Q14790),has_input(UniProtKB:O00220) UniProtKB:Q99497 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q99497 PARK7 involved_in GO:0032091 PMID:24899725 IDA P Parkinson disease protein 7 PARK7 protein taxon:9606 20140710 ParkinsonsUK-UCL has_input(UniProtKB:P40337),has_input(UniProtKB:Q16665),part_of(GO:0051444) UniProtKB:Q99497 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q99497 PARK7 involved_in GO:2000679 PMID:22492997 IMP P Parkinson disease protein 7 PARK7 protein taxon:9606 20140915 ParkinsonsUK-UCL has_input(UniProtKB:Q16236) UniProtKB:Q99497 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q99613 EIF3C involved_in GO:1902416 PMID:24092755 IPI UniProtKB:O15371,UniProtKB:P60228,UniProtKB:Q04637 P Eukaryotic translation initiation factor 3 subunit C EIF3C|EIF3S8 protein taxon:9606 20161031 ParkinsonsUK-UCL has_input(UniProtKB:Q04637) UniProtKB:Q99613 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9H1E3 NUCKS1 involved_in GO:1990968 PMID:25116364 IMP P Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 NUCKS1|NUCKS|JC7 protein taxon:9606|taxon:11706 20160721 ParkinsonsUK-UCL has_input(UniProtKB:P04608),part_of(GO:0043923) UniProtKB:Q9H1E3 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9NYF0 DACT1 involved_in GO:0032091 PMID:18936100 IGI UniProtKB:P35222,UniProtKB:Q9UJU2 P Dapper homolog 1 DACT1|DPR1|HNG3 protein taxon:9606 20170410 ParkinsonsUK-UCL has_input(UniProtKB:Q9UJU2),part_of(GO:0000122),part_of(GO:0090090),occurs_in(GO:0005634)|has_input(UniProtKB:P35222),part_of(GO:0000122),part_of(GO:0090090),occurs_in(GO:0005634) UniProtKB:Q9NYF0 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9NYF0 DACT1 involved_in GO:0032092 PMID:18936100 IGI UniProtKB:Q13547,UniProtKB:Q9UJU2 P Dapper homolog 1 DACT1|DPR1|HNG3 protein taxon:9606 20170410 ParkinsonsUK-UCL has_input(UniProtKB:Q13547),part_of(GO:0000122),part_of(GO:0090090)|has_input(UniProtKB:Q9UJU2),part_of(GO:0000122),part_of(GO:0090090) UniProtKB:Q9NYF0 `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 30

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O75807 PPP1R15A enables GO:0019888 PMID:11564868 IC GO:0008157|GO:0032515|GO:0032516 F Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20141110 ParkinsonsUK-UCL UniProtKB:O75807 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O75807 PPP1R15A involved_in GO:0032515 PMID:11564868 IDA P Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20141110 ParkinsonsUK-UCL has_input(UniProtKB:P62136) UniProtKB:O75807 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O75807 PPP1R15A involved_in GO:0032516 PMID:11564868 IDA P Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20150209 ParkinsonsUK-UCL UniProtKB:O75807 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:1916193 Pink1 involved_in GO:0035307 PMID:24553947 IMP P Serine/threonine-protein kinase PINK1, mitochondrial protein taxon:10090 20140826 ParkinsonsUK-UCL has_input(UniProtKB:Q60876),part_of(GO:0071456) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O75807 PPP1R15A involved_in GO:0035308 PMID:11564868 IDA P Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20141110 ParkinsonsUK-UCL UniProtKB:O75807 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q99497 PARK7 involved_in GO:0036531 PMID:25416785 IDA P Parkinson disease protein 7 PARK7 protein taxon:9606 20160808 ParkinsonsUK-UCL UniProtKB:Q99497 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P31749 AKT1 enables GO:0004674 PMID:21711983 TAS F RAC-alpha serine/threonine-protein kinase AKT1|PKB|RAC protein taxon:9606 20160215 ParkinsonsUK-UCL has_input(UniProtKB:P49841),part_of(GO:0100002)|has_input(UniProtKB:P49840),part_of(GO:0100002) UniProtKB:P31749 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:1927072 Ppp1r15a involved_in GO:1902310 PMID:11381086 IDA P Protein phosphatase 1 regulatory subunit 15A protein taxon:10090 20141027 ParkinsonsUK-UCL has_input(UniProtKB:Q6ZWX6) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:1927072 Ppp1r15a involved_in GO:1902310 PMID:16835242 IDA P Protein phosphatase 1 regulatory subunit 15A protein taxon:10090 20231018 ParkinsonsUK-UCL has_input(UniProtKB:Q6ZWX6),part_of(GO:0034976) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:2444211 Ppp1r15b involved_in GO:1902310 PMID:16835242 IDA P Protein phosphatase 1 regulatory subunit 15B protein taxon:10090 20231018 ParkinsonsUK-UCL has_input(UniProtKB:Q6ZWX6) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O43639 NCK2 involved_in GO:1902310 PMID:16835242 IDA P Cytoplasmic protein NCK2 NCK2|GRB4 protein taxon:9606 20231018 ParkinsonsUK-UCL has_input(UniProtKB:P05198) UniProtKB:O43639 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O75807 PPP1R15A enables GO:0019888 PMID:12556489 IC GO:0000164|GO:0008157|GO:1902310 F Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20141106 ParkinsonsUK-UCL has_input(UniProtKB:P62136) UniProtKB:O75807 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O75807 PPP1R15A enables GO:0072542 PMID:21518769 IC GO:0008157|GO:1902310 F Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20141030 ParkinsonsUK-UCL part_of(GO:1902310) UniProtKB:O75807 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O75807 PPP1R15A involved_in GO:0032058 PMID:12556489 IC GO:1902310 P Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20141118 ParkinsonsUK-UCL UniProtKB:O75807 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O75807 PPP1R15A involved_in GO:1902310 PMID:11564868 IDA P Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20150209 ParkinsonsUK-UCL has_input(UniProtKB:P05198) UniProtKB:O75807 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O75807 PPP1R15A involved_in GO:1902310 PMID:12556489 IDA P Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20141106 ParkinsonsUK-UCL has_input(UniProtKB:P05198) UniProtKB:O75807 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O75807 PPP1R15A involved_in GO:1902310 PMID:21518769 IDA P Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20141030 ParkinsonsUK-UCL has_input(UniProtKB:P05198) UniProtKB:O75807 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P16333 NCK1 involved_in GO:1902310 PMID:16835242 IDA P SH2/SH3 adapter protein NCK1 NCK1|NCK protein taxon:9606 20231018 ParkinsonsUK-UCL has_input(UniProtKB:P05198) UniProtKB:P16333 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q5SWA1 PPP1R15B involved_in GO:1902310 GO_REF:0000024 ISS UniProtKB:Q8BFW3 P Protein phosphatase 1 regulatory subunit 15B PPP1R15B protein taxon:9606 20231018 ParkinsonsUK-UCL has_input(UniProtKB:P05198) UniProtKB:Q5SWA1 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:98953 Wnt1 enables GO:0048018 PMID:21752258 IC GO:1903204 F Proto-oncogene Wnt-1 protein taxon:10090 20160914 ParkinsonsUK-UCL has_input(UniProtKB:O70421),part_of(GO:0060070) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:98953 Wnt1 involved_in GO:0036520 PMID:21752258 IMP P Proto-oncogene Wnt-1 protein taxon:10090 20190918 ParkinsonsUK-UCL occurs_in(UBERON:0001891),causally_upstream_of(GO:1903204) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:1355296 Prkn involved_in GO:0032436 PMID:23858059 IMP P E3 ubiquitin-protein ligase parkin protein taxon:10090 20140729 ParkinsonsUK-UCL has_input(UniProtKB:Q8VBV4),part_of(GO:1903204),occurs_in(CL:0000530),occurs_in(UBERON:0000955) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O75807 PPP1R15A involved_in GO:1903917 PMID:21518769 IDA P Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20151008 ParkinsonsUK-UCL has_input(UniProtKB:P05198) UniProtKB:O75807 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O75807 PPP1R15A involved_in GO:1903917 PMID:22013210 TAS P Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20150209 ParkinsonsUK-UCL UniProtKB:O75807 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P35638 DDIT3 enables GO:0003700 PMID:15322075 IC GO:0032993|GO:1990440 F DNA damage-inducible transcript 3 protein DDIT3|CHOP|CHOP10|GADD153 protein taxon:9606 20150122 ParkinsonsUK-UCL has_input(UniProtKB:O14763),part_of(GO:1990440) UniProtKB:P35638 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P35638 DDIT3 involved_in GO:0043525 PMID:22761832 IC GO:1990440 P DNA damage-inducible transcript 3 protein DDIT3|CHOP|CHOP10|GADD153 protein taxon:9606 20150122 ParkinsonsUK-UCL part_of(GO:0034976) UniProtKB:P35638 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P35638 DDIT3 involved_in GO:1902237 PMID:22761832 IC GO:1990440 P DNA damage-inducible transcript 3 protein DDIT3|CHOP|CHOP10|GADD153 protein taxon:9606 20150122 ParkinsonsUK-UCL occurs_in(CL:0000540) UniProtKB:P35638 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q99497 PARK7 enables GO:0044877 PMID:19822128 IDA F Parkinson disease protein 7 PARK7 protein taxon:9606 20190422 ParkinsonsUK-UCL has_input(GO:0005747) UniProtKB:Q99497 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P52824 DGKQ involved_in GO:0010801 PMID:22732145 IDA P Diacylglycerol kinase theta DGKQ|DAGK4 protein taxon:9606 20161111 ParkinsonsUK-UCL part_of(GO:0007205),has_input(UniProtKB:P00533),positively_regulates(GO:0018108) UniProtKB:P52824 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P52824 DGKQ involved_in GO:0050731 PMID:22732145 IDA P Diacylglycerol kinase theta DGKQ|DAGK4 protein taxon:9606 20161111 ParkinsonsUK-UCL part_of(GO:0007205),has_input(UniProtKB:P00533) UniProtKB:P52824 `

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

• total: 7

messages

• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1921256 Dnm1l enables GO:0042803 PMID:20585624 IPI UniProtKB:Q8K1M6 F Dynamin-1-like protein protein taxon:10090 20230309 ParkinsonsUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1352504 Hip1r enables GO:0042803 PMID:11564758 IPI UniProtKB:Q9JKY5 F Huntingtin-interacting protein 1-related protein protein taxon:10090 20230309 ParkinsonsUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1352504 Hip1r enables GO:0042803 PMID:15533940 IPI UniProtKB:Q9JKY5 F Huntingtin-interacting protein 1-related protein protein taxon:10090 20230309 ParkinsonsUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1352504 Hip1r enables GO:0042803 PMID:18790740 IPI UniProtKB:Q9JKY5 F Huntingtin-interacting protein 1-related protein protein taxon:10090 20230309 ParkinsonsUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 2326 Cebpa enables GO:0042803 PMID:8657121|RGD:1599740 IPI UniProtKB:P05554 F CCAAT/enhancer binding protein alpha gene taxon:10116 20141016 ParkinsonsUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 619781 Erp29 enables GO:0042803 PMID:9714535|RGD:10047223 IPI UniProtKB:P52555 F endoplasmic reticulum protein 29 gene taxon:10116 20230309 ParkinsonsUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 68397 Syt4 enables GO:0042803 PMID:10397765|RGD:11535116 IPI UniProtKB:P50232 F synaptotagmin 4 gene taxon:10116 20230309 ParkinsonsUK-UCL `

gorule-0000061

Allowed gene product to term relations (gp2term)

• total: 16

messages

• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432, RO:0002325, RO:0001025. Repaired to RO:0001025--`MGI MGI:1934811 Nucks1 part_of GO:0000785 PMID:26205492 IDA C Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 protein taxon:10090 20210107 ParkinsonsUK-UCL coincident_with(SO:0000167) `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002325, RO:0002432, RO:0001025. Repaired to RO:0001025--`RGD 3738 Sp1 part_of GO:0000785 PMID:26908121|RGD:11059577 IDA C Sp1 transcription factor gene taxon:10116 20210107 ParkinsonsUK-UCL coincident_with(SO:0000167),part_of(CL:0000746) `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002325, RO:0002432, RO:0001025. Repaired to RO:0001025--`RGD 727889 Rela part_of GO:0000785 PMID:26908121|RGD:11059577 IDA C RELA proto-oncogene, NF-kB subunit gene taxon:10116 20210107 ParkinsonsUK-UCL coincident_with(SO:0000167),part_of(CL:0000746) UniProtKB:Q7TQN4 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB O15047 SETD1A part_of GO:0000785 PMID:27141965 IDA C Histone-lysine N-methyltransferase SETD1A SETD1A|KIAA0339|KMT2F|SET1|SET1A protein taxon:9606 20210107 ParkinsonsUK-UCL coincident_with(SO:0000167) UniProtKB:O15047 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB O43464 HTRA2 part_of GO:0000785 PMID:24798695 IDA C Serine protease HTRA2, mitochondrial HTRA2|OMI|PRSS25 protein taxon:9606 20140701 ParkinsonsUK-UCL UniProtKB:O43464 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P21675 TAF1 part_of GO:0000785 PMID:20181722 IDA C Transcription initiation factor TFIID subunit 1 TAF1|BA2R|CCG1|CCGS|TAF2A protein taxon:9606 20210107 ParkinsonsUK-UCL existence_overlaps(GO:0071383),coincident_with(SO:0001668)|existence_overlaps(GO:0071383),coincident_with(SO:0000165) UniProtKB:P21675 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P22415 USF1 part_of GO:0000785 PMID:27141965 IDA C Upstream stimulatory factor 1 USF1|BHLHB11|USF protein taxon:9606 20210107 ParkinsonsUK-UCL coincident_with(SO:0000167) UniProtKB:P22415 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P23246 SFPQ part_of GO:0000785 PMID:16731528 IDA C Splicing factor, proline- and glutamine-rich SFPQ|PSF protein taxon:9606 20140716 ParkinsonsUK-UCL UniProtKB:P23246 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q06609 RAD51 part_of GO:0000785 PMID:26323318 IDA C DNA repair protein RAD51 homolog 1 RAD51|RAD51A|RECA protein taxon:9606 20160602 ParkinsonsUK-UCL existence_overlaps(GO:0006974) UniProtKB:Q06609 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q12830 BPTF part_of GO:0000785 PMID:27141965 IDA C Nucleosome-remodeling factor subunit BPTF BPTF|FAC1|FALZ protein taxon:9606 20210107 ParkinsonsUK-UCL coincident_with(SO:0000167) UniProtKB:Q12830 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q13547 HDAC1 part_of GO:0000785 PMID:16731528 IDA C Histone deacetylase 1 HDAC1|RPD3L1 protein taxon:9606 20140716 ParkinsonsUK-UCL UniProtKB:Q13547 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q96B01 RAD51AP1 part_of GO:0000785 PMID:26323318 IDA C RAD51-associated protein 1 RAD51AP1|PIR51 protein taxon:9606 20160602 ParkinsonsUK-UCL existence_overlaps(GO:0006974) UniProtKB:Q96B01 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q99497 PARK7 part_of GO:0000785 PMID:16731528 IDA C Parkinson disease protein 7 PARK7 protein taxon:9606 20140716 ParkinsonsUK-UCL UniProtKB:Q99497 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q9BXM7 PINK1 part_of GO:0000785 PMID:24798695 IDA C Serine/threonine-protein kinase PINK1, mitochondrial PINK1 protein taxon:9606 20140701 ParkinsonsUK-UCL UniProtKB:Q9BXM7 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q9H1E3 NUCKS1 part_of GO:0000785 GO_REF:0000024 ISS UniProtKB:Q80XU3 C Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 NUCKS1|NUCKS|JC7 protein taxon:9606 20210107 ParkinsonsUK-UCL coincident_with(SO:0000167) UniProtKB:Q9H1E3 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q9H1E3 NUCKS1 part_of GO:0000785 PMID:26323318 IDA C Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 NUCKS1|NUCKS|JC7 protein taxon:9606 20160602 ParkinsonsUK-UCL UniProtKB:Q9H1E3 `