GORULE violations assigned by PINC

Contents

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000013 Taxon-appropriate annotation check

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000061 Allowed gene product to term relations (gp2term)

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 11

messages

• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O60282 KIF5C involved_in GO:0006996 PMID:9782088 TAS P Kinesin heavy chain isoform 5C KIF5C|KIAA0531|NKHC2 protein taxon:9606 20030904 PINC UniProtKB:O60282 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O95239 KIF4A involved_in GO:0006996 PMID:7929562 TAS P Chromosome-associated kinesin KIF4A KIF4A|KIF4 protein taxon:9606 20030904 PINC UniProtKB:O95239 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P15408 FOSL2 involved_in GO:0008219 PMID:8954781 TAS P Fos-related antigen 2 FOSL2|FRA2 protein taxon:9606 20030904 PINC UniProtKB:P15408 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P43115 PTGER3 involved_in GO:0008219 PMID:10947062 TAS P Prostaglandin E2 receptor EP3 subtype PTGER3 protein taxon:9606 20030904 PINC UniProtKB:P43115 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P48357 LEPR involved_in GO:0007275 PMID:9537324 TAS P Leptin receptor LEPR|DB|OBR protein taxon:9606 20030904 PINC UniProtKB:P48357 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P78344 EIF4G2 involved_in GO:0008219 PMID:9032289 TAS P Eukaryotic translation initiation factor 4 gamma 2 EIF4G2|DAP5|OK/SW-cl.75 protein taxon:9606 20030904 PINC UniProtKB:P78344 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q16552 IL17A involved_in GO:0008219 PMID:8390535 TAS P Interleukin-17A IL17A|CTLA8|IL17 protein taxon:9606 20030904 PINC UniProtKB:Q16552 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q8N0V5 GCNT2 involved_in GO:0007275 PMID:9134435 TAS P N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase GCNT2|GCNT5|II|NACGT1 protein taxon:9606 20030904 PINC UniProtKB:Q8N0V5 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q96CV9 OPTN involved_in GO:0008219 PMID:9488477 TAS P Optineurin OPTN|FIP2|GLC1E|HIP7|HYPL|NRP protein taxon:9606 20061107 PINC UniProtKB:Q96CV9 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9UIL4 KIF25 involved_in GO:0006996 PMID:9925916 TAS P Kinesin-like protein KIF25 KIF25|KNSL3 protein taxon:9606 20050308 PINC UniProtKB:Q9UIL4 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9Y496 KIF3A involved_in GO:0006996 PMID:1447303 TAS P Kinesin-like protein KIF3A KIF3A|KIF3 protein taxon:9606 20030904 PINC UniProtKB:Q9Y496 `

gorule-0000013

Taxon-appropriate annotation check

• total: 1

messages

• ERROR - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB P78424 POU6F2 involved_in GO:0007402 PMID:8601806 TAS P POU domain, class 6, transcription factor 2 POU6F2|RPF1 protein taxon:9606 20030904 PINC UniProtKB:P78424 `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 7

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P12956 XRCC6 involved_in GO:0006266 PMID:9826654 TAS P X-ray repair cross-complementing protein 6 XRCC6|G22P1 protein taxon:9606 20030904 PINC UniProtKB:P12956 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P16455 MGMT involved_in GO:0006266 PMID:2188979 TAS P Methylated-DNA--protein-cysteine methyltransferase MGMT protein taxon:9606 20030904 PINC UniProtKB:P16455 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P30626 SRI involved_in GO:0006880 PMID:9668070 TAS P Sorcin SRI protein taxon:9606 20030904 PINC UniProtKB:P30626 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O00221 NFKBIE involved_in GO:0042994 PMID:9135156 TAS P NF-kappa-B inhibitor epsilon NFKBIE|IKBE protein taxon:9606 20031119 PINC UniProtKB:O00221 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q99750 MDFI involved_in GO:0042994 PMID:8797820 TAS P MyoD family inhibitor MDFI protein taxon:9606 20031119 PINC UniProtKB:Q99750 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P55211 CASP9 involved_in GO:2001056 PMID:9390557 TAS P Caspase-9 CASP9|MCH6 protein taxon:9606 20030904 PINC UniProtKB:P55211 `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q99445 GML involved_in GO:0006977 PMID:8934543 TAS P Glycosyl-phosphatidylinositol-anchored molecule-like protein GML|LY6DL protein taxon:9606 20030904 PINC UniProtKB:Q99445 `

gorule-0000061

Allowed gene product to term relations (gp2term)

• total: 4

messages

• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P07919 UQCRH located_in GO:0098803 PMID:2826252 TAS C Cytochrome b-c1 complex subunit 6, mitochondrial UQCRH protein taxon:9606 20030904 PINC UniProtKB:P07919 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P14927 UQCRB located_in GO:0098803 PMID:3056408 TAS C Cytochrome b-c1 complex subunit 7 UQCRB|UQBP protein taxon:9606 20030904 PINC UniProtKB:P14927 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P31930 UQCRC1 located_in GO:0098803 PMID:8407948 TAS C Cytochrome b-c1 complex subunit 1, mitochondrial UQCRC1 protein taxon:9606 20030904 PINC UniProtKB:P31930 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0001025 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB Q15526 SURF1 located_in GO:0098803 PMID:9843204 TAS C Surfeit locus protein 1 SURF1|SURF-1 protein taxon:9606 20030904 PINC UniProtKB:Q15526 `