GORULE violations assigned by GeneDB


Contents

gorule-0000001 GAF lines are parsed according to GAF 2.2 specifications

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000011 ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

gorule-0000013 Taxon-appropriate annotation check

gorule-0000016 With/From: IC annotations require a With/From GO ID

gorule-0000018 IPI annotations require a With/From entry

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000029 IEAs should be less than one year old.

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000055 References should have only one ID per ID space

gorule-0000059 GAF Version 2.0 and 2.1 are converted into GAF Version 2.2

gorule-0000061 Allowed gene product to term relations (gp2term)

gorule-0000063 Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)



MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.2 specifications

messages

gorule-0000008

No annotations should be made to uninformative high level terms

messages

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

messages

gorule-0000013

Taxon-appropriate annotation check

messages

gorule-0000016

With/From: IC annotations require a With/From GO ID

messages

gorule-0000018

IPI annotations require a With/From entry

messages

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

messages

gorule-0000029

IEAs should be less than one year old.

messages