GORULE violations assigned by EcoliWiki

Contents

gorule-0000013 Taxon-appropriate annotation check

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

MESSAGES

gorule-0000013

Taxon-appropriate annotation check

• total: 10

messages

• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB P00509 aspC acts_upstream_of_or_within GO:0009094 PMID:15983 IGI EcoliWiki:ilvE|EcoliWiki:tyrB P Aspartate aminotransferase aspC|JW0911|b0928 protein taxon:83333 20080805 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB P04968 ilvA acts_upstream_of_or_within GO:0009097 PMID:4604254 IMP P L-threonine dehydratase biosynthetic IlvA ilvA|JW3745|b3772 protein taxon:83333 20090825 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB P04968 ilvA acts_upstream_of_or_within GO:0009097 PMID:8407838 IMP P L-threonine dehydratase biosynthetic IlvA ilvA|JW3745|b3772 protein taxon:83333 20090825 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB P09151 leuA acts_upstream_of_or_within GO:0009098 PMID:4570778 IMP P 2-isopropylmalate synthase leuA|JW0073|b0074 protein taxon:83333 20110705 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB P0A877 trpA acts_upstream_of_or_within GO:0000162 PMID:8463331 IMP P Tryptophan synthase alpha chain trpA|JW1252|b1260 protein taxon:83333 20090818 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB P0A877 trpA contributes_to GO:0004834 PMID:8463331 IDA F Tryptophan synthase alpha chain trpA|JW1252|b1260 protein taxon:83333 20090818 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB P0A879 trpB acts_upstream_of_or_within GO:0000162 PMID:8325869 IMP P Tryptophan synthase beta chain trpB|JW1253|b1261 protein taxon:83333 20090824 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB P0A879 trpB contributes_to GO:0004834 PMID:8325869 IDA F Tryptophan synthase beta chain trpB|JW1253|b1261 protein taxon:83333 20090824 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB P13009 metH enables GO:0008705 PMID:10978155 IDA F Methionine synthase metH|JW3979|b4019 protein taxon:83333 20090216 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB P30125 leuB acts_upstream_of_or_within GO:0009098 PMID:4570778 IMP P 3-isopropylmalate dehydrogenase leuB|JW5807|b0073 protein taxon:83333 20110705 EcoliWiki `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 11

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P02930 tolC acts_upstream_of_or_within GO:0014070 PMID:9473050 IMP P Outer membrane protein TolC tolC|colE1-i|mtcB|mukA|refI|toc|weeA|JW5503|b3035 protein taxon:83333 20081117 EcoliWiki `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P77335 hlyE acts_upstream_of_or_within GO:0044532 PMID:10858262 IDA P Hemolysin E, chromosomal hlyE|clyA|hpr|sheA|ycgD|JW5181|b1182 protein taxon:83333 20130910 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P0ABS5 dnaG enables GO:0003896 PMID:340457 IDA F DNA primase dnaG|dnaP|parB|JW3038|b3066 protein taxon:83333 20091113 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P0A6E6 atpC part_of GO:0045261 PMID:6238948 IDA C ATP synthase epsilon chain atpC|papG|uncC|JW3709|b3731 protein taxon:83333 20110815 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P0ABA4 atpH part_of GO:0045261 PMID:6294057 IMP C ATP synthase subunit delta atpH|papE|uncH|JW3713|b3735 protein taxon:83333 20080731 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P0ABA6 atpG part_of GO:0045261 PMID:2863270 IMP C ATP synthase gamma chain atpG|papC|uncG|JW3711|b3733 protein taxon:83333 20080730 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P0ABB0 atpA part_of GO:0045261 PMID:153904 IMP C ATP synthase subunit alpha atpA|papA|uncA|JW3712|b3734 protein taxon:83333 20080730 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P0ABB4 atpD part_of GO:0045261 PMID:158358 IMP C ATP synthase subunit beta atpD|papB|uncD|JW3710|b3732 protein taxon:83333 20110815 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P0AB98 atpB part_of GO:0045263 PMID:6460031 IMP C ATP synthase subunit a atpB|papD|uncB|JW3716|b3738 protein taxon:83333 20080805 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P0ABA0 atpF part_of GO:0045263 PMID:6460031 IMP C ATP synthase subunit b atpF|papF|uncF|JW3714|b3736 protein taxon:83333 20080805 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P68699 atpE part_of GO:0045263 PMID:6460031 IMP C ATP synthase subunit c atpE|papH|uncE|JW3715|b3737 protein taxon:83333 20080805 EcoliWiki `