GORULE violations assigned by EcoliWiki

Contents

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000013 Taxon-appropriate annotation check

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000028 GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

MESSAGES

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 8

messages

• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`EcoCyc E2P-MONOMER AceF acts_upstream_of_or_within GO:0006090 PMID:349114 IMP P pyruvate dehydrogenase E2 subunit aceF|b0115|ECK0114 protein taxon:83333 20091016 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`EcoCyc E3-MONOMER Lpd acts_upstream_of_or_within GO:0006090 PMID:6311808 IDA P lipoamide dehydrogenase lpd|dhl|lpdA|b0116|ECK0115 protein taxon:83333 20081007 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`EcoCyc E3-MONOMER Lpd acts_upstream_of_or_within GO:0006090 PMID:4197899 IMP P lipoamide dehydrogenase lpd|dhl|lpdA|b0116|ECK0115 protein taxon:83333 20081007 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`EcoCyc EG10850-MONOMER RimI acts_upstream_of_or_within GO:0036211 PMID:6991870 IMP P protein N-acetyltransferase RimI rimI|b4373|ECK4364 protein taxon:83333 20090601 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`EcoCyc EG10851-MONOMER RimJ acts_upstream_of_or_within GO:0036211 PMID:385889 IMP P ribosomal-protein-S5-alanine N-acetyltransferase rimJ|tcp|b1066|ECK1051 protein taxon:83333 20090601 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`EcoCyc EG10853-MONOMER RimL acts_upstream_of_or_within GO:0036211 PMID:17445774 IDA P ribosomal-protein-L12-serine N-acetyltransferase rimL|b1427|ECK1420 protein taxon:83333 20090601 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`EcoCyc EG11591-MONOMER LipB acts_upstream_of_or_within GO:0036211 PMID:15642479 IDA P lipoyl(octanoyl) transferase lipB|cde|lip|b0630|ECK0623 protein taxon:83333 20100503 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`EcoCyc G7211-MONOMER SixA acts_upstream_of_or_within GO:0036211 PMID:17628145 IMP P phosphohistidine phosphatase SixA sixA|yfcW|b2340|ECK2334 protein taxon:83333 20091112 EcoliWiki `

gorule-0000013

Taxon-appropriate annotation check

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`EcoCyc MONOMER0-2383 DnaX-gamma part_of GO:0043846 PMID:8376347 IDA C DNA polymerase III subunit gamma dnaX|dnaZ|b0470|ECK0464 protein taxon:83333 20090626 EcoliWiki `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 14

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`EcoCyc E1P-MONOMER AceE enables GO:0004738 PMID:327021 IGI EcoliWiki:aceF|EcoliWiki:lpd F pyruvate dehydrogenase E1 component aceE|b0114|ECK0113 protein taxon:83333 20110602 EcoliWiki `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`EcoCyc E2P-MONOMER AceF contributes_to GO:0004738 PMID:3903169 IDA F pyruvate dehydrogenase E2 subunit aceF|b0115|ECK0114 protein taxon:83333 20091016 EcoliWiki `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`EcoCyc EG11009-MONOMER TolC acts_upstream_of_or_within GO:0014070 PMID:9473050 IMP ERROR:aspect outer membrane channel TolC tolC|weeA|colE1-i|mtcB|mukA|refI|toc|b3035|ECK3026 protein taxon:83333 20081117 EcoliWiki `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`EcoCyc G6619-MONOMER HlyE acts_upstream_of_or_within GO:0044532 PMID:10858262 IDA ERROR:aspect hemolysin E hlyE|ycgD|clyA|hpr|sheA|b1182|ECK1170 protein taxon:83333 20130910 EcoliWiki `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`EcoCyc EG10985-MONOMER SurA acts_upstream_of_or_within GO:0060274 PMID:2165476 IMP P chaperone SurA surA|b0053|ECK0054 protein taxon:83333 20091009 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`EcoCyc EG10239-MONOMER DnaG enables GO:0003896 PMID:340457 IDA ERROR:aspect DNA primase dnaG|dnaP|parB|sdgA|b3066|ECK3056 protein taxon:83333 20091113 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`EcoCyc ATPA-MONOMER AtpA part_of GO:0045261 PMID:153904 IMP ERROR:aspect ATP synthase F1 complex subunit alpha atpA|papA|uncA|b3734|ECK3727 protein taxon:83333 20080730 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`EcoCyc ATPC-MONOMER AtpC part_of GO:0045261 PMID:6238948 IDA ERROR:aspect ATP synthase F1 complex subunit epsilon atpC|papG|uncC|b3731|ECK3724 protein taxon:83333 20110815 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`EcoCyc ATPD-MONOMER AtpD part_of GO:0045261 PMID:158358 IMP ERROR:aspect ATP synthase F1 complex subunit beta atpD|papB|uncD|b3732|ECK3725 protein taxon:83333 20110815 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`EcoCyc ATPG-MONOMER AtpG part_of GO:0045261 PMID:2863270 IMP ERROR:aspect ATP synthase F1 complex subunit gamma atpG|papC|uncG|b3733|ECK3726 protein taxon:83333 20080730 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`EcoCyc ATPH-MONOMER AtpH part_of GO:0045261 PMID:6294057 IMP ERROR:aspect ATP synthase F1 complex subunit delta atpH|papE|uncH|b3735|ECK3728 protein taxon:83333 20080731 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`EcoCyc ATPB-MONOMER AtpB part_of GO:0045263 PMID:6460031 IMP ERROR:aspect ATP synthase Fo complex subunit a atpB|papD|uncB|b3738|ECK3731 protein taxon:83333 20080805 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`EcoCyc ATPE-MONOMER AtpE part_of GO:0045263 PMID:6460031 IMP ERROR:aspect ATP synthase Fo complex subunit c atpE|papH|uncE|b3737|ECK3730 protein taxon:83333 20080805 EcoliWiki `
• WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`EcoCyc ATPF-MONOMER AtpF part_of GO:0045263 PMID:6460031 IMP ERROR:aspect ATP synthase Fo complex subunit b atpF|papF|uncF|b3736|ECK3729 protein taxon:83333 20080805 EcoliWiki `

gorule-0000028

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

• total: 9

messages

• WARNING - Violates GO Rule:GORULE:0000028: Found violation of: `Aspect can only be one of C, P, F` but was repaired--`EcoCyc ATPA-MONOMER AtpA part_of GO:0045261 PMID:153904 IMP ERROR:aspect ATP synthase F1 complex subunit alpha atpA|papA|uncA|b3734|ECK3727 protein taxon:83333 20080730 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000028: Found violation of: `Aspect can only be one of C, P, F` but was repaired--`EcoCyc ATPB-MONOMER AtpB part_of GO:0045263 PMID:6460031 IMP ERROR:aspect ATP synthase Fo complex subunit a atpB|papD|uncB|b3738|ECK3731 protein taxon:83333 20080805 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000028: Found violation of: `Aspect can only be one of C, P, F` but was repaired--`EcoCyc ATPC-MONOMER AtpC part_of GO:0045261 PMID:6238948 IDA ERROR:aspect ATP synthase F1 complex subunit epsilon atpC|papG|uncC|b3731|ECK3724 protein taxon:83333 20110815 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000028: Found violation of: `Aspect can only be one of C, P, F` but was repaired--`EcoCyc ATPD-MONOMER AtpD part_of GO:0045261 PMID:158358 IMP ERROR:aspect ATP synthase F1 complex subunit beta atpD|papB|uncD|b3732|ECK3725 protein taxon:83333 20110815 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000028: Found violation of: `Aspect can only be one of C, P, F` but was repaired--`EcoCyc ATPE-MONOMER AtpE part_of GO:0045263 PMID:6460031 IMP ERROR:aspect ATP synthase Fo complex subunit c atpE|papH|uncE|b3737|ECK3730 protein taxon:83333 20080805 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000028: Found violation of: `Aspect can only be one of C, P, F` but was repaired--`EcoCyc ATPF-MONOMER AtpF part_of GO:0045263 PMID:6460031 IMP ERROR:aspect ATP synthase Fo complex subunit b atpF|papF|uncF|b3736|ECK3729 protein taxon:83333 20080805 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000028: Found violation of: `Aspect can only be one of C, P, F` but was repaired--`EcoCyc ATPG-MONOMER AtpG part_of GO:0045261 PMID:2863270 IMP ERROR:aspect ATP synthase F1 complex subunit gamma atpG|papC|uncG|b3733|ECK3726 protein taxon:83333 20080730 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000028: Found violation of: `Aspect can only be one of C, P, F` but was repaired--`EcoCyc ATPH-MONOMER AtpH part_of GO:0045261 PMID:6294057 IMP ERROR:aspect ATP synthase F1 complex subunit delta atpH|papE|uncH|b3735|ECK3728 protein taxon:83333 20080731 EcoliWiki `
• WARNING - Violates GO Rule:GORULE:0000028: Found violation of: `Aspect can only be one of C, P, F` but was repaired--`EcoCyc EG10239-MONOMER DnaG enables GO:0003896 PMID:340457 IDA ERROR:aspect DNA primase dnaG|dnaP|parB|sdgA|b3066|ECK3056 protein taxon:83333 20091113 EcoliWiki `