GORULE violations assigned by DisProt

Contents

gorule-0000006 GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology

gorule-0000013 GORULE:0000013: Taxon-appropriate annotation check

gorule-0000020 Violates GORULE:0000020

gorule-0000051 GORULE:0000051: Some GO terms require a value in the Annotation Extension field

gorule-0000061 GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050

MESSAGES

gorule-0000006

GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology

• total: 9

messages

• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`MGI MGI:97769 Prnp enables GO:0140677 MGI:MGI:6116610|PMID:28945221 IEP F prion protein CD230|Prn-i|Prn-p|PrP|PrPC|PrPSc|Sinc protein_coding_gene taxon:10090 20220228 DisProt `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P01106 MYC enables GO:0140537 PMID:8755740 IEP F Myc proto-oncogene protein MYC|BHLHE39 protein taxon:9606 20220228 DisProt `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P18564 ITGB6 enables GO:0140677 PMID:11821050 IEP F Integrin beta-6 ITGB6 protein taxon:9606 20220228 DisProt `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P40337 VHL enables GO:0003714 PMID:11641274 IEP F von Hippel-Lindau disease tumor suppressor VHL protein taxon:9606 20220228 DisProt `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q06787 FMR1 enables GO:0008143 PMID:10496225 IEP F Fragile X messenger ribonucleoprotein 1 FMR1 protein taxon:9606 20220228 DisProt `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q06787 FMR1 enables GO:0008266 PMID:10496225 IEP F Fragile X messenger ribonucleoprotein 1 FMR1 protein taxon:9606 20220228 DisProt `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q06787 FMR1 enables GO:0034046 PMID:10496225 IEP F Fragile X messenger ribonucleoprotein 1 FMR1 protein taxon:9606 20220228 DisProt `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q16236 NFE2L2 enables GO:0031625 PMID:16888629 IEP F Nuclear factor erythroid 2-related factor 2 NFE2L2|NRF2 protein taxon:9606 20220228 DisProt has_input(UniProtKB:Q14145) `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P06836 GAP43 enables GO:0008289 PMID:1826685 IEP F Neuromodulin GAP43 protein taxon:9913 20220228 DisProt `

gorule-0000013

GORULE:0000013: Taxon-appropriate annotation check

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB Q14457 BECN1 involved_in GO:0039521 PMID:18797192 IDA P Beclin-1 BECN1|GT197 protein taxon:9606 20220228 DisProt `

gorule-0000020

Violates GORULE:0000020

• total: 17

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P01137 TGFB1 involved_in GO:0061912 PMID:30979895 IMP P Transforming growth factor beta-1 proprotein TGFB1|TGFB protein taxon:9606 20220228 DisProt `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P27797 CALR involved_in GO:0061912 PMID:28655748 EXP P Calreticulin CALR|CRTC protein taxon:9606 20220228 DisProt `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P40337 VHL involved_in GO:0061912 PMID:30902965 IMP P von Hippel-Lindau disease tumor suppressor VHL protein taxon:9606 20220228 DisProt `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q13137 CALCOCO2 involved_in GO:0061912 PMID:23022382 EXP P Calcium-binding and coiled-coil domain-containing protein 2 CALCOCO2|NDP52 protein taxon:9606 20220228 DisProt `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q13137 CALCOCO2 involved_in GO:0061912 PMID:23022382 IPI UniProtKB:Q9BXW4 P Calcium-binding and coiled-coil domain-containing protein 2 CALCOCO2|NDP52 protein taxon:9606 20220228 DisProt `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q13188 STK3 involved_in GO:0061912 PMID:31857374 IEP P Serine/threonine-protein kinase 3 STK3|KRS1|MST2 protein taxon:9606 20220228 DisProt `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q13188 STK3 involved_in GO:0061912 PMID:31857374 IMP P Serine/threonine-protein kinase 3 STK3|KRS1|MST2 protein taxon:9606 20220228 DisProt `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q13188 STK3 involved_in GO:0061912 PMID:31857374 IPI UniProtKB:O95166,UniProtKB:Q9BXW4 P Serine/threonine-protein kinase 3 STK3|KRS1|MST2 protein taxon:9606 20220228 DisProt `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q14457 BECN1 involved_in GO:0061912 PMID:30767700 IMP P Beclin-1 BECN1|GT197 protein taxon:9606 20220228 DisProt `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q8NEB9 PIK3C3 involved_in GO:0061912 PMID:30767700 IMP P Phosphatidylinositol 3-kinase catalytic subunit type 3 PIK3C3|VPS34 protein taxon:9606 20220228 DisProt `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q8NEB9 PIK3C3 involved_in GO:0061912 PMID:30767700 IPI UniProtKB:O95166,UniProtKB:P60520,UniProtKB:Q9BXW4,UniProtKB:Q9GZQ8,UniProtKB:Q9H0R8,UniProtKB:Q9H492 P Phosphatidylinositol 3-kinase catalytic subunit type 3 PIK3C3|VPS34 protein taxon:9606 20220228 DisProt `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q96RF0 SNX18 involved_in GO:0061912 PMID:23878278 IMP P Sorting nexin-18 SNX18|SH3PXD3B protein taxon:9606 20220228 DisProt `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q96RF0 SNX18 involved_in GO:0061912 PMID:23878278 IPI UniProtKB:O95166,UniProtKB:Q05140,UniProtKB:Q10567,UniProtKB:Q9GZQ8 P Sorting nexin-18 SNX18|SH3PXD3B protein taxon:9606 20220228 DisProt `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q9GZZ9 UBA5 involved_in GO:0061912 PMID:26929408 EXP P Ubiquitin-like modifier-activating enzyme 5 UBA5|UBE1DC1 protein taxon:9606 20220228 DisProt `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q9GZZ9 UBA5 involved_in GO:0061912 PMID:26929408 IPI UniProtKB:O95166,UniProtKB:P60520,UniProtKB:P61960,UniProtKB:Q9H0R8 P Ubiquitin-like modifier-activating enzyme 5 UBA5|UBE1DC1 protein taxon:9606 20220228 DisProt `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q9GZZ9 UBA5 involved_in GO:0061912 PMID:30990354 EXP P Ubiquitin-like modifier-activating enzyme 5 UBA5|UBE1DC1 protein taxon:9606 20220228 DisProt `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q9Y4P1 ATG4B involved_in GO:0061912 PMID:28287329 IEP P Cysteine protease ATG4B ATG4B|APG4B|AUTL1|KIAA0943 protein taxon:9606 20220228 DisProt `

gorule-0000051

GORULE:0000051: Some GO terms require a value in the Annotation Extension field

• total: 22

messages

• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`MGI MGI:1096327 Axin1 enables GO:0005515 MGI:MGI:5314424|PMID:22307604 IPI UniProtKB:Q6PFX9 F axin 1 protein_coding_gene taxon:10090 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`MGI MGI:1096381 Bmal1 enables GO:0005515 MGI:MGI:7327235|PMID:21521686 IPI UniProtKB:P97784,UniProtKB:Q9R194 F basic helix-loop-helix ARNT like 1 Arnt3|Arntl|bHLHe5|MOP3 protein_coding_gene taxon:10090 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`MGI MGI:88354 Cdh1 enables GO:0005515 MGI:MGI:7327229|PMID:19759396 IPI UniProtKB:P14923 F cadherin 1 Ecad|E-cad|E-cadherin|L-CAM|UM|uvomorulin protein_coding_gene taxon:10090 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`MGI MGI:1270841 Cry1 enables GO:0005515 MGI:MGI:7327235|PMID:21521686 IPI UniProtKB:Q9WTL8 F cryptochrome circadian regulator 1 Phll1 protein_coding_gene taxon:10090 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`MGI MGI:1270859 Cry2 enables GO:0005515 MGI:MGI:7327235|PMID:21521686 IPI UniProtKB:Q9WTL8 F cryptochrome circadian regulator 2 D130054K12Rik protein_coding_gene taxon:10090 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`MGI MGI:1927344 Gmnn enables GO:0005515 MGI:MGI:3693385|PMID:15286659 IPI UniProtKB:Q8R4E9 F geminin Gem protein_coding_gene taxon:10090 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`MGI MGI:105086 Pou2af1 enables GO:0005515 MGI:MGI:7327236|PMID:10329190 IPI UniProtKB:Q64693 F POU domain, class 2, associating factor 1 Bob1|Bob-1|BOB.1|OBF-1|OBF.1|OCAB|OCA-B protein_coding_gene taxon:10090 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`MGI MGI:97769 Prnp enables GO:0005515 MGI:MGI:6116610|PMID:28945221 IPI UniProtKB:P37840 F prion protein CD230|Prn-i|Prn-p|PrP|PrPC|PrPSc|Sinc protein_coding_gene taxon:10090 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`MGI MGI:97769 Prnp enables GO:0005515 MGI:MGI:6267587|PMID:30355631 IPI UniProtKB:P10636 F prion protein CD230|Prn-i|Prn-p|PrP|PrPC|PrPSc|Sinc protein_coding_gene taxon:10090 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`MGI MGI:97769 Prnp enables GO:0005515 MGI:MGI:3836364|PMID:19242475 IPI UniProtKB:P05067 F prion protein CD230|Prn-i|Prn-p|PrP|PrPC|PrPSc|Sinc protein_coding_gene taxon:10090 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`MGI MGI:1201791 Socs3 enables GO:0005515 MGI:MGI:4939120|PMID:18590740 IPI UniProtKB:Q15370 F suppressor of cytokine signaling 3 CIS3|Cish3|cytokine-inducible SH2 protein 3|E2a-Pbx1 target gene in fibroblasts 10|EF-10|SOCS-3|SSI-3|STAT-induced STAT inhibitor 3 protein_coding_gene taxon:10090 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`UniProtKB P0AE72 mazE enables GO:0005515 PMID:27026704 IPI UniProtKB:P0AE70 F Antitoxin MazE mazE|chpAI|chpR|JW2754|b2783 protein taxon:83333 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`UniProtKB P21513 rne enables GO:0005515 PMID:15236960 IPI UniProtKB:P0A8J8 F Ribonuclease E rne|ams|hmp1|JW1071|b1084 protein taxon:83333 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`UniProtKB P28307 csgA enables GO:0005515 PMID:32398666 IPI UniProtKB:P0AEA2 F Major curlin subunit csgA|JW1025|b1042 protein taxon:83333 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`UniProtKB P69346 yefM enables GO:0005515 PMID:14672926 IPI UniProtKB:P69348 F Antitoxin YefM yefM|JW5835|b2017 protein taxon:83333 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`RGD 3866 Nkx2-1 enables GO:0005515 PMID:9425125|RGD:12792996 IPI UniProtKB:P13393 F NK2 homeobox 1 gene taxon:10116 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`RGD 61827 Kcnab1 enables GO:0005515 PMID:10585425|RGD:153298938 IPI UniProtKB:P10499 F potassium voltage-gated channel subfamily A regulatory beta subunit 1 gene taxon:10116 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`UniProtKB O00268 TAF4 enables GO:0005515 PMID:27515574 IPI UniProtKB:P08047 F Transcription initiation factor TFIID subunit 4 TAF4|TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135 protein taxon:9606 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`UniProtKB O46385 SVIL enables GO:0005515 PMID:12917436 IPI UniProtKB:P07313 F Supervillin SVIL protein taxon:9913 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`UniProtKB O46385 SVIL enables GO:0005515 PMID:12917436 IPI UniProtKB:P68135 F Supervillin SVIL protein taxon:9913 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`UniProtKB P18206 VCL enables GO:0005515 PMID:24878663 IPI UniProtKB:Q9BX66 F Vinculin VCL protein taxon:9606 20220228 DisProt UniProtKB:P18206-2 `
• WARNING - Violates GO Rule:GORULE:0000051: Some GO terms require a value in the Annotation Extension field--`UniProtKB Q05917 EN2 enables GO:0005515 PMID:12642491 IPI UniProtKB:P32182 F Homeobox protein engrailed-2 EN2|EN-2 protein taxon:9031 20220228 DisProt `

gorule-0000061

GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050--`UniProtKB Q92574 TSC1 is_active_in GO:0033596 PMID:26893383 EXP C Hamartin TSC1|KIAA0243|TSC protein taxon:9606 20220228 DisProt `