GORULE violations assigned by DisProt
Contents
gorule-0000006
IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC
gorule-0000008
No annotations should be made to uninformative high level terms
gorule-0000013
Taxon-appropriate annotation check
gorule-0000046
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.
gorule-0000061
Allowed gene product to term relations (gp2term)
MESSAGES
gorule-0000006
IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC
messages
- ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`MGI MGI:97769 Prnp enables GO:0140677 MGI:MGI:6116610|PMID:28945221 IEP F prion protein CD230|Prn-i|Prn-p|PrP|PrPC|PrPSc|Sinc protein_coding_gene taxon:10090 20220228 DisProt
`
- ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P01106 MYC enables GO:0140537 PMID:8755740 IEP F Myc proto-oncogene protein MYC|BHLHE39 protein taxon:9606 20220228 DisProt
`
- ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P18564 ITGB6 enables GO:0140677 PMID:11821050 IEP F Integrin beta-6 ITGB6 protein taxon:9606 20220228 DisProt
`
- ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P40337 VHL enables GO:0003714 PMID:11641274 IEP F von Hippel-Lindau disease tumor suppressor VHL protein taxon:9606 20220228 DisProt
`
- ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P46379 BAG6 enables GO:0140677 PMID:25713138 IEP F Large proline-rich protein BAG6 BAG6|BAT3|G3 protein taxon:9606 20220228 DisProt
`
- ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q06787 FMR1 enables GO:0008143 PMID:10496225 IEP F Fragile X messenger ribonucleoprotein 1 FMR1 protein taxon:9606 20220228 DisProt
`
- ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q06787 FMR1 enables GO:0008266 PMID:10496225 IEP F Fragile X messenger ribonucleoprotein 1 FMR1 protein taxon:9606 20220228 DisProt
`
- ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q06787 FMR1 enables GO:0034046 PMID:10496225 IEP F Fragile X messenger ribonucleoprotein 1 FMR1 protein taxon:9606 20220228 DisProt
`
- ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q16236 NFE2L2 enables GO:0031625 PMID:16888629 IEP F Nuclear factor erythroid 2-related factor 2 NFE2L2|NRF2 protein taxon:9606 20220228 DisProt has_input(UniProtKB:Q14145)
`
- ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P06836 GAP43 enables GO:0008289 PMID:1826685 IEP F Neuromodulin GAP43 protein taxon:9913 20220228 DisProt
`
gorule-0000008
No annotations should be made to uninformative high level terms
messages
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:894679 Bach2 enables GO:0043167 MGI:MGI:7310017|PMID:25444856 EXP F BTB and CNC homology, basic leucine zipper transcription factor 2 E030004N02Rik protein_coding_gene taxon:10090 20220228 DisProt
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1929258 Kcnip3 enables GO:0043167 MGI:MGI:5882899|PMID:15746104 EXP F Kv channel interacting protein 3, calsenilin 4933407H12Rik|Csen|DREAM|KChIP3|R74849 protein_coding_gene taxon:10090 20220228 DisProt
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:2182368 Sgk3 involved_in GO:0051179 MGI:MGI:3047534|PMID:15126499 EXP P serum/glucocorticoid regulated kinase 3 2510015P22Rik|A330005P07Rik|Cisk|cytokine-independent survival kinase|fy protein_coding_gene taxon:10090 20220228 DisProt
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`ZFIN ZDB-GENE-031112-4 stm enables GO:0043167 PMID:26445027|ZFIN:ZDB-PUB-151008-2 IDA F starmaker cb885|id:ibd5112|sb:cb148|sb:cb568|sb:cb584 protein_coding_gene taxon:7955 20220228 DisProt
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P06401 PGR involved_in GO:0042326 PMID:20861224 IEP P Progesterone receptor PGR|NR3C3 protein taxon:9606 20220228 DisProt
`
gorule-0000013
Taxon-appropriate annotation check
messages
- WARNING - Violates GO Rule:GORULE:0000013: Taxon-appropriate annotation check--`UniProtKB Q14457 BECN1 involved_in GO:0039521 PMID:18797192 IDA P Beclin-1 BECN1|GT197 protein taxon:9606 20220228 DisProt
`
gorule-0000046
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.
messages
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P80723 BASP1 involved_in GO:0051260 PMID:32750402 IDA P Brain acid soluble protein 1 BASP1|NAP22 protein taxon:9606 20220228 DisProt
`
gorule-0000061
Allowed gene product to term relations (gp2term)
messages
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB Q16236 NFE2L2 is_active_in GO:0016592 PMID:32727915 EXP C Nuclear factor erythroid 2-related factor 2 NFE2L2|NRF2 protein taxon:9606 20220228 DisProt
`
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB Q92574 TSC1 is_active_in GO:0033596 PMID:26893383 EXP C Hamartin TSC1|KIAA0243|TSC protein taxon:9606 20220228 DisProt
`
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB O43561 LAT is_active_in GO:0036398 PMID:33080222 IDA C Linker for activation of T-cells family member 1 LAT protein taxon:9606 20220228 DisProt UniProtKB:O43561-2
`