GORULE violations assigned by DisProt

Contents

gorule-0000006 IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

gorule-0000016 With/From: IC annotations require a With/From GO ID

gorule-0000027 Each identifier in GAF is valid

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000061 Allowed gene product to term relations (gp2term)

MESSAGES

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

• total: 15

messages

• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`MGI MGI:97769 Prnp enables GO:0140677 PMID:28945221 IEP F Major prion protein Prn-p|Prnp|Prp protein taxon:10090 20220228 DisProt `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`MGI MGI:97769 mPRNP enables GO:0140677 PMID:28945221 IEP F major prion protein (mouse) CD230 (mouse)|PrP (mouse)|PrP27-30 (mouse)|PrP33-35C (mouse)|mPRNP protein taxon:10090 20220228 DisProt `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`SGD S000007235 SEM1 enables GO:0044183 PMID:22343721 IEP F proteasome regulatory particle lid subunit SEM1 DSS1|HOD1|YDR363W-A protein taxon:559292 20220228 DisProt `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`SGD S000007235 SEM1 enables GO:0060090 PMID:24412063 IEP F proteasome regulatory particle lid subunit SEM1 DSS1|HOD1|YDR363W-A protein taxon:559292 20220228 DisProt `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB O14672 ADAM10 enables GO:0042803 PMID:25349418 IEP F Disintegrin and metalloproteinase domain-containing protein 10 ADAM10|KUZ|MADM protein taxon:9606 20220228 DisProt has_input(UniProtKB:O14672) UniProtKB:O14672 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB O75807 PPP1R15A enables GO:0019888 PMID:34847777 IEP F Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20220228 DisProt has_input(UniProtKB:P62136) UniProtKB:O75807 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P01106 MYC enables GO:0140537 PMID:8755740 IEP F Myc proto-oncogene protein MYC|BHLHE39 protein taxon:9606 20220228 DisProt UniProtKB:P01106 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P18564 ITGB6 enables GO:0140677 PMID:11821050 IEP F Integrin beta-6 ITGB6 protein taxon:9606 20220228 DisProt UniProtKB:P18564 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P40337 VHL enables GO:0003714 PMID:11641274 IEP F von Hippel-Lindau disease tumor suppressor VHL protein taxon:9606 20220228 DisProt UniProtKB:P40337 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P46379 BAG6 enables GO:0140677 PMID:25713138 IEP F Large proline-rich protein BAG6 BAG6|BAT3|G3 protein taxon:9606 20220228 DisProt UniProtKB:P46379 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q06787 FMR1 enables GO:0008143 PMID:10496225 IEP F Fragile X messenger ribonucleoprotein 1 FMR1 protein taxon:9606 20220228 DisProt UniProtKB:Q06787 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q06787 FMR1 enables GO:0008266 PMID:10496225 IEP F Fragile X messenger ribonucleoprotein 1 FMR1 protein taxon:9606 20220228 DisProt UniProtKB:Q06787 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q06787 FMR1 enables GO:0034046 PMID:10496225 IEP F Fragile X messenger ribonucleoprotein 1 FMR1 protein taxon:9606 20220228 DisProt UniProtKB:Q06787 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB Q16236 NFE2L2 enables GO:0031625 PMID:16888629 IEP F Nuclear factor erythroid 2-related factor 2 NFE2L2|NRF2 protein taxon:9606 20220228 DisProt has_input(UniProtKB:Q14145) UniProtKB:Q16236 `
• ERROR - Violates GO Rule:GORULE:0000006: IEP and HEP usage is restricted to terms from the Biological Process ontology--`UniProtKB P06836 GAP43 enables GO:0008289 PMID:1826685 IEP F Neuromodulin GAP43 protein taxon:9913 20220228 DisProt UniProtKB:P06836 `

gorule-0000016

With/From: IC annotations require a With/From GO ID

• total: 1

messages

• WARNING - Violates GO Rule:GORULE:0000016: All IC annotations should include a GO ID in the "With/From" column that is also different from the entry in the "GO ID" column--`PomBase SPCC584.04 sup35 enables GO:0000287 PMID:15099522 IC F cytoplasmic translation release factor class II, GTPase eRF3 erf3|sup9 protein_coding_gene taxon:4896 20220228 DisProt has_input(ChEBI:18420) `

gorule-0000027

Each identifier in GAF is valid

• total: 20

messages

• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`UniProtKB O60568 PLOD3 enables GO:0036094 PMID:30089812 EXP F Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 PLOD3 protein taxon:9606 20220228 DisProt has_input(ChEBI:17659) UniProtKB:O60568 `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`PomBase SPCC584.04 sup35 enables GO:0000287 PMID:15099522 IC F cytoplasmic translation release factor class II, GTPase eRF3 erf3|sup9 protein_coding_gene taxon:4896 20220228 DisProt has_input(ChEBI:18420) `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`SGD S000006389 ATG13 enables GO:0008289 PMID:31352862 IMP F serine/threonine protein kinase regulatory subunit ATG13 APG13|YPR185W protein taxon:559292 20220228 DisProt has_input(ChEBI:28874) `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`SGD S000006389 ATG13 enables GO:0008289 PMID:31352862 IPI ChEBI:28874 F serine/threonine protein kinase regulatory subunit ATG13 APG13|YPR185W protein taxon:559292 20220228 DisProt `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`UniProtKB O60568 PLOD3 enables GO:0046872 PMID:30089812 EXP F Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 PLOD3 protein taxon:9606 20220228 DisProt has_input(ChEBI:29033),has_input(ChEBI:29035) UniProtKB:O60568 `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`UniProtKB O60568 PLOD3 enables GO:0046872 PMID:30089812 EXP F Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 PLOD3 protein taxon:9606 20220228 DisProt has_input(ChEBI:29033),has_input(ChEBI:29035) UniProtKB:O60568 `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`UniProtKB A0A1D5PXA5 TRPV4 enables GO:0008289 PMID:37443299 EXP F Transient receptor potential cation channel subfamily V member 4 TRPV4 protein taxon:9031 20220228 DisProt has_input(ChEBI:34080) UniProtKB:A0A1D5PXA5 `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`UniProtKB A0A1D5PXA5 TRPV4 enables GO:0008289 PMID:37443299 IPI ChEBI:34080,ChEBI:73001 F Transient receptor potential cation channel subfamily V member 4 TRPV4 protein taxon:9031 20220228 DisProt UniProtKB:A0A1D5PXA5 `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`UniProtKB O15431 SLC31A1 enables GO:0005507 PMID:36409899 EXP F High affinity copper uptake protein 1 SLC31A1|COPT1|CTR1 protein taxon:9606 20220228 DisProt has_input(ChEBI:49552) UniProtKB:O15431 `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`MGI MGI:104727 Cplx1 enables GO:0008289 PMID:35777466 EXP F Complexin-1 Cplx1 protein taxon:10090 20220228 DisProt has_input(ChEBI:78018),has_input(ChEBI:52360),has_input(ChEBI:60285),has_input(ChEBI:60568) `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`MGI MGI:104727 mCPLX1 enables GO:0008289 PMID:35777466 EXP F complexin-1 (mouse) 921-S (mouse)|CPX I (mouse)|complexin I (mouse)|mCPLX1|synaphin-2 (mouse) protein taxon:10090 20220228 DisProt has_input(ChEBI:78018),has_input(ChEBI:52360),has_input(ChEBI:60285),has_input(ChEBI:60568) `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`MGI MGI:104727 Cplx1 enables GO:0008289 PMID:35777466 EXP F Complexin-1 Cplx1 protein taxon:10090 20220228 DisProt has_input(ChEBI:78018),has_input(ChEBI:52360),has_input(ChEBI:60285),has_input(ChEBI:60568) `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`MGI MGI:104727 mCPLX1 enables GO:0008289 PMID:35777466 EXP F complexin-1 (mouse) 921-S (mouse)|CPX I (mouse)|complexin I (mouse)|mCPLX1|synaphin-2 (mouse) protein taxon:10090 20220228 DisProt has_input(ChEBI:78018),has_input(ChEBI:52360),has_input(ChEBI:60285),has_input(ChEBI:60568) `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`MGI MGI:104727 Cplx1 enables GO:0008289 PMID:35777466 EXP F Complexin-1 Cplx1 protein taxon:10090 20220228 DisProt has_input(ChEBI:78018),has_input(ChEBI:52360),has_input(ChEBI:60285),has_input(ChEBI:60568) `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`MGI MGI:104727 mCPLX1 enables GO:0008289 PMID:35777466 EXP F complexin-1 (mouse) 921-S (mouse)|CPX I (mouse)|complexin I (mouse)|mCPLX1|synaphin-2 (mouse) protein taxon:10090 20220228 DisProt has_input(ChEBI:78018),has_input(ChEBI:52360),has_input(ChEBI:60285),has_input(ChEBI:60568) `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`SGD S000001880 HSP12 enables GO:0008289 PMID:33485946 IDA F lipid-binding protein HSP12 GLP1|HOR5|YFL014W protein taxon:559292 20220228 DisProt has_input(ChEBI:72999) `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`UniProtKB A0A1D5PXA5 TRPV4 enables GO:0008289 PMID:37443299 IPI ChEBI:34080,ChEBI:73001 F Transient receptor potential cation channel subfamily V member 4 TRPV4 protein taxon:9031 20220228 DisProt UniProtKB:A0A1D5PXA5 `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`MGI MGI:104727 Cplx1 enables GO:0008289 PMID:35777466 EXP F Complexin-1 Cplx1 protein taxon:10090 20220228 DisProt has_input(ChEBI:78018),has_input(ChEBI:52360),has_input(ChEBI:60285),has_input(ChEBI:60568) `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`MGI MGI:104727 mCPLX1 enables GO:0008289 PMID:35777466 EXP F complexin-1 (mouse) 921-S (mouse)|CPX I (mouse)|complexin I (mouse)|mCPLX1|synaphin-2 (mouse) protein taxon:10090 20220228 DisProt has_input(ChEBI:78018),has_input(ChEBI:52360),has_input(ChEBI:60285),has_input(ChEBI:60568) `
• WARNING - Invalid identifier:GORULE:0000027: ChEBI not found in list of database names in dbxrefs--`UniProtKB O00499 BIN1 enables GO:0008289 PMID:18658220 EXP F Myc box-dependent-interacting protein 1 BIN1|AMPHL protein taxon:9606 20220228 DisProt has_input(ChEBI:78018) UniProtKB:O00499 `

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

• total: 7

messages

• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:107376 Msi1 enables GO:0042803 PMID:32225071 IDA F RNA-binding protein Musashi homolog 1 Msi1|Msi1h protein taxon:10090 20220228 DisProt has_input(UniProtKB:Q61474) `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:107376 mMSI1 enables GO:0042803 PMID:32225071 IDA F RNA-binding protein Musashi homolog 1 (mouse) mMSI1|musashi-1 (mouse) protein taxon:10090 20220228 DisProt has_input(UniProtKB:Q61474) `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1925662 Cyren involved_in GO:0051260 PMID:30017584 EXP P Cell cycle regulator of non-homologous end joining Cyren|Mri protein taxon:10090 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1925662 mCYREN involved_in GO:0051260 PMID:30017584 EXP P cell cycle regulator of non-homologous end joining (mouse) cell cycle regulator of NHEJ (mouse)|mCYREN|modulator of retrovirus infection homolog (mouse) protein taxon:10090 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1929258 Kcnip3 enables GO:0042803 PMID:15746104 EXP F Calsenilin Csen|Dream|Kchip3|Kcnip3 protein taxon:10090 20220228 DisProt has_input(UniProtKB:Q9QXT8) `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1929258 mKCNIP3/iso:[1/2/3] enables GO:0042803 PMID:15746104 EXP F calsenilin isoforms 1/2/3 (mouse) mKCNIP3/iso:[1/2/3] protein taxon:10090 20220228 DisProt has_input(UniProtKB:Q9QXT8) `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P80723 BASP1 involved_in GO:0051260 PMID:32750402 IDA P Brain acid soluble protein 1 BASP1|NAP22 protein taxon:9606 20220228 DisProt UniProtKB:P80723 `

gorule-0000061

Allowed gene product to term relations (gp2term)

• total: 10

messages

• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`MGI MGI:1925662 Cyren is_active_in GO:1990391 PMID:30017584 IPI UniProtKB:P23475,UniProtKB:P70388,UniProtKB:P97313,UniProtKB:Q3KNJ2,UniProtKB:Q61216,UniProtKB:Q62388,UniProtKB:Q8K0Y7,UniProtKB:Q9R207 C Cell cycle regulator of non-homologous end joining Cyren|Mri protein taxon:10090 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`MGI MGI:1925662 mCYREN is_active_in GO:1990391 PMID:30017584 IPI UniProtKB:P23475,UniProtKB:P70388,UniProtKB:P97313,UniProtKB:Q3KNJ2,UniProtKB:Q61216,UniProtKB:Q62388,UniProtKB:Q8K0Y7,UniProtKB:Q9R207 C cell cycle regulator of non-homologous end joining (mouse) cell cycle regulator of NHEJ (mouse)|mCYREN|modulator of retrovirus infection homolog (mouse) protein taxon:10090 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000004802 SGS1 is_active_in GO:0031422 PMID:24038467 IMP C ATP-dependent DNA helicase SGS1 YMR190C protein taxon:559292 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000006389 ATG13 is_active_in GO:0070772 PMID:27404361 IDA C serine/threonine protein kinase regulatory subunit ATG13 APG13|YPR185W protein taxon:559292 20220228 DisProt has_input(UniProtKB:Q06410),has_input(UniProtKB:Q12142) `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000006389 ATG13 is_active_in GO:1990316 PMID:27404361 EXP C serine/threonine protein kinase regulatory subunit ATG13 APG13|YPR185W protein taxon:559292 20220228 DisProt `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB O43561 LAT is_active_in GO:0036398 PMID:33080222 IDA C Linker for activation of T-cells family member 1 LAT protein taxon:9606 20220228 DisProt UniProtKB:O43561-2 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB O75807 PPP1R15A is_active_in GO:0000164 PMID:34847777 IPI UniProtKB:P62136,UniProtKB:Q9BY44 C Protein phosphatase 1 regulatory subunit 15A PPP1R15A|GADD34 protein taxon:9606 20220228 DisProt UniProtKB:O75807 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P38936 CDKN1A is_active_in GO:0070557 PMID:11463845 IPI UniProtKB:P12004 C Cyclin-dependent kinase inhibitor 1 CDKN1A|CAP20|CDKN1|CIP1|MDA6|PIC1|SDI1|WAF1 protein taxon:9606 20220228 DisProt UniProtKB:P38936 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB Q16236 NFE2L2 is_active_in GO:0016592 PMID:32727915 EXP C Nuclear factor erythroid 2-related factor 2 NFE2L2|NRF2 protein taxon:9606 20220228 DisProt UniProtKB:Q16236 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB Q92574 TSC1 is_active_in GO:0033596 PMID:26893383 EXP C Hamartin TSC1|KIAA0243|TSC protein taxon:9606 20220228 DisProt UniProtKB:Q92574 `