GORULE violations assigned by CAFA
Contents
gorule-0000005
IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations are not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''
gorule-0000008
No annotations should be made to uninformative high level terms
gorule-0000046
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.
gorule-0000061
Allowed gene product to term relations (gp2term)
gorule-0000065
Annotations to term that are candidates for obsoletion should be produce a warning
MESSAGES
gorule-0000005
IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations are not allowed for direct annotations to to 'protein binding ; GO:0005515 or GO:0005488 binding''
messages
- WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`MGI MGI:1891221 Crtap enables GO:0005515 GO_REF:0000024 ISS UniProtKB:Q90830 F cartilage associated protein 5730529N23Rik|CASP|Leprel3|P3h5 protein taxon:10090 20180925 CAFA has_input(UniProtKB:Q3V1T4),has_input(UniProtKB:P24369)
`
- WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`MGI MGI:97750 Ppib enables GO:0005515 GO_REF:0000024 ISS UniProtKB:P24367 F peptidylprolyl isomerase B Cphn-2|Cphn2|CyP-20b|cyclophilin B protein taxon:10090 20180925 CAFA has_input(UniProtKB:Q9CYD3),has_input(UniProtKB:Q3V1T4)
`
- WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`RGD 620312 Ppib enables GO:0005515 GO_REF:0000024 ISS UniProtKB:P24367 F peptidylprolyl isomerase B protein taxon:10116 20180925 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000005: IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations ae not allowed for direct annotations to 'binding ; GO:0005488' or 'protein binding ; GO:0005515'--`UniProtKB P23284 PPIB enables GO:0005515 GO_REF:0000024 ISS UniProtKB:P24367 F Peptidyl-prolyl cis-trans isomerase B PPIB|CYPB protein taxon:9606 20180925 CAFA has_input(UniProtKB:O75718),has_input(UniProtKB:Q32P28) UniProtKB:P23284
`
gorule-0000008
No annotations should be made to uninformative high level terms
messages
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:88005 Amelx located_in GO:0099080 PMID:20304108 IDA C amelogenin, X-linked Amel|Amg|M100888|Rgsc888 protein taxon:10090 20161125 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P55854 SUMO3 involved_in GO:0043392 PMID:16626738 IDA P Small ubiquitin-related modifier 3 SUMO3|SMT3A|SMT3H1 protein taxon:9606 20190910 CAFA has_input(UniProtKB:Q13569) UniProtKB:P55854
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P63165 SUMO1 involved_in GO:0043392 PMID:16626738 IDA P Small ubiquitin-related modifier 1 SUMO1|SMT3C|SMT3H3|UBL1|OK/SW-cl.43 protein taxon:9606 20190910 CAFA has_input(UniProtKB:Q13569) UniProtKB:P63165
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q09161 NCBP1 involved_in GO:1905216 PMID:23793891 IMP P Nuclear cap-binding protein subunit 1 NCBP1|CBP80|NCBP protein taxon:9606 20170111 CAFA UniProtKB:Q09161
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`AGI_LocusCode AT3G62410 CP12-2 located_in GO:0099080 PMID:16258009 IDA C Calvin cycle protein CP12-2, chloroplastic At3g62410|CP12-2|T12C14.110 protein taxon:3702 20161110 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`AGI_LocusCode AT3G62410 CP12-2 located_in GO:0099080 PMID:17947231 IMP C Calvin cycle protein CP12-2, chloroplastic At3g62410|CP12-2|T12C14.110 protein taxon:3702 20161110 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`AGI_LocusCode AT3G62410 CP12-2 located_in GO:0099080 PMID:22514274 IDA C Calvin cycle protein CP12-2, chloroplastic At3g62410|CP12-2|T12C14.110 protein taxon:3702 20161110 CAFA
`
gorule-0000046
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.
messages
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:88005 Amelx enables GO:0042803 PMID:19086270 IDA F amelogenin, X-linked Amel|Amg|M100888|Rgsc888 protein taxon:10090 20161125 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:98181 Rrm2 enables GO:0042803 PMID:8876648 IDA F ribonucleotide reductase M2 R2 protein taxon:10090 20161103 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc BIOTINLIG-MONOMER BirA enables GO:0042803 PMID:11124029 IMP F DNA-binding transcriptional repressor/biotin-[acetyl-CoA-carboxylase] ligase BirA protein taxon:83333 20161020 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc E1P-MONOMER AceE enables GO:0042803 PMID:11955070 IDA F pyruvate dehydrogenase E1 component protein taxon:83333 20161031 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc EG10416-MONOMER GrpE enables GO:0042803 PMID:9103205 IDA F nucleotide exchange factor GrpE protein taxon:83333 20160926 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc EG10571-MONOMER MazE enables GO:0042803 PMID:12718874 IDA F antitoxin of the MazF-MazE toxin-antitoxin system MazE protein taxon:83333 20161017 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc EG10571-MONOMER MazE enables GO:0042803 PMID:12743116 IDA F antitoxin of the MazF-MazE toxin-antitoxin system MazE protein taxon:83333 20161017 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc EG10571-MONOMER MazE enables GO:0042803 PMID:15735309 IDA F antitoxin of the MazF-MazE toxin-antitoxin system MazE protein taxon:83333 20161017 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc EG10873-MONOMER RplL enables GO:0042803 PMID:10747797 IDA F 50S ribosomal subunit protein L12 protein taxon:83333 20160630 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc EG10978-MONOMER SspB enables GO:0042803 PMID:14536075 IMP F ClpXP protease specificity-enhancing factor protein taxon:83333 20160930 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc EG11249-MONOMER MazF enables GO:0042803 PMID:12718874 IDA F endoribonuclease toxin MazF protein taxon:83333 20161017 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc PD00196 Fis enables GO:0042803 PMID:11183780 IMP F DNA-binding transcriptional dual regulator Fis protein taxon:83333 20161028 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc PD00196 Fis enables GO:0042803 PMID:1619650 IDA F DNA-binding transcriptional dual regulator Fis protein taxon:83333 20161028 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc PD00196 Fis enables GO:0042803 PMID:1946369 IMP F DNA-binding transcriptional dual regulator Fis protein taxon:83333 20161028 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc PD00196 Fis enables GO:0042803 PMID:9362499 IMP F DNA-binding transcriptional dual regulator Fis protein taxon:83333 20161028 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc PDXH-MONOMER PdxH enables GO:0042803 PMID:15858270 IDA F pyridoxine/pyridoxamine 5'-phosphate oxidase protein taxon:83333 20160927 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc TAR-MONOMER Tar enables GO:0042803 PMID:15916610 IMP F methyl-accepting chemotaxis protein Tar protein taxon:83333 20161017 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`EcoCyc TRG-MONOMER Trg enables GO:0042803 PMID:15916610 IMP F methyl-accepting chemotaxis protein Trg protein taxon:83333 20161017 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 1359514 Scly enables GO:0042803 PMID:20164179 IDA F selenocysteine lyase protein taxon:10116 20161117 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 2553 Eno1 enables GO:0042803 PMID:7964722 IDA F enolase 1 protein taxon:10116 20160720 CAFA occurs_in(GO:0005886)
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 2677 Gdnf enables GO:0042803 PMID:9187648 IDA F glial cell derived neurotrophic factor protein taxon:10116 20160913 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 2754 Gsta2 enables GO:0042803 PMID:15152091 IDA F glutathione S-transferase alpha 2 protein taxon:10116 20161020 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 3222 Ocm enables GO:0042803 PMID:2231727 IDA F oncomodulin protein taxon:10116 20161020 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`RGD 3222 Ocm enables GO:0042803 PMID:8487302 IDA F oncomodulin protein taxon:10116 20161020 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`SGD S000005299 ACC1 enables GO:0042803 PMID:15341732 IMP F acetyl-CoA carboxylase ACC1 ABP2|FAS3|MTR7|YNR016C protein taxon:559292 20161111 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P52477 mexA involved_in GO:0051260 PMID:15226509 IMP P Multidrug resistance protein MexA mexA|PA0425 protein taxon:208964 20161026 CAFA UniProtKB:P52477
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`FB FBgn0000024 Ace enables GO:0042803 PMID:10892800 IDA F Acetylcholine esterase CG17907 protein taxon:7227 20161019 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`FB FBgn0000546 EcR enables GO:0042803 PMID:22628309 IMP F Ecdysone receptor CG1765 protein taxon:7227 20161115 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`FB FBgn0011760 ctp enables GO:0042803 PMID:15051340 IMP F cut up CG6998 protein taxon:7227 20161115 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`FB FBgn0011760 ctp enables GO:0042803 PMID:15581372 IMP F cut up CG6998 protein taxon:7227 20161115 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`FB FBgn0011760 ctp enables GO:0042803 PMID:19759397 IDA F cut up CG6998 protein taxon:7227 20161115 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`FB FBgn0024432 Dlc90F enables GO:0042803 PMID:19759397 IDA F Dynein light chain 90F CG12363 protein taxon:7227 20161115 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P06733 ENO1 enables GO:0042803 PMID:3529090 IDA F Alpha-enolase ENO1|ENO1L1|MBPB1|MPB1 protein taxon:9606 20160718 CAFA UniProtKB:P06733
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P07602 PSAP enables GO:0042803 PMID:18462685 IDA F Prosaposin PSAP|GLBA|SAP1 protein taxon:9606 20161018 CAFA UniProtKB:P07602
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P08238 HSP90AB1 enables GO:0042803 PMID:10811660 IDA F Heat shock protein HSP 90-beta HSP90AB1|HSP90B|HSPC2|HSPC3|HSPCB protein taxon:9606 20170110 CAFA UniProtKB:P08238
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P10912 GHR enables GO:0042803 PMID:8943276 IDA F Growth hormone receptor GHR protein taxon:9606 20160817 CAFA UniProtKB:P10912
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P15309 ACP3 enables GO:0042803 PMID:10639192 IDA F Prostatic acid phosphatase ACP3|ACPP protein taxon:9606 20170112 CAFA UniProtKB:P15309
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P17342 NPR3 enables GO:0042803 PMID:16870210 IDA F Atrial natriuretic peptide receptor 3 NPR3|ANPRC|C5orf23|NPRC protein taxon:9606 20161014 CAFA UniProtKB:P17342
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P19971 TYMP enables GO:0042803 PMID:1590793 IDA F Thymidine phosphorylase TYMP|ECGF1 protein taxon:9606 20160722 CAFA UniProtKB:P19971
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P23381 WARS1 enables GO:0042803 PMID:22504299 IDA F Tryptophan--tRNA ligase, cytoplasmic WARS1|IFI53|WARS|WRS protein taxon:9606 20170124 CAFA UniProtKB:P23381
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P24522 GADD45A enables GO:0042803 PMID:20460379 IDA F Growth arrest and DNA damage-inducible protein GADD45 alpha GADD45A|DDIT1|GADD45 protein taxon:9606 20161124 CAFA UniProtKB:P24522
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P32455 GBP1 enables GO:0042803 PMID:10676968 IDA F Guanylate-binding protein 1 GBP1 protein taxon:9606 20161215 CAFA UniProtKB:P32455
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P35638 DDIT3 enables GO:0042803 PMID:18534616 IDA F DNA damage-inducible transcript 3 protein DDIT3|CHOP|CHOP10|GADD153 protein taxon:9606 20170113 CAFA UniProtKB:P35638
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P78356 PIP4K2B enables GO:0042803 PMID:9753329 IDA F Phosphatidylinositol 5-phosphate 4-kinase type-2 beta PIP4K2B|PIP5K2B protein taxon:9606 20160816 CAFA UniProtKB:P78356
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q04206 RELA enables GO:0042803 PMID:18045535 IDA F Transcription factor p65 RELA|NFKB3 protein taxon:9606 20160512 CAFA UniProtKB:Q04206
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q6PI77 GPRASP3 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:Q6PB60 F G protein-coupled receptor associated sorting protein 3 GPRASP3|BHLHB9|KIAA1701 protein taxon:9606 20131008 CAFA UniProtKB:Q6PI77
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q92886 NEUROG1 enables GO:0042803 PMID:20102160 IDA F Neurogenin-1 NEUROG1|BHLHA6|NEUROD3|NGN|NGN1 protein taxon:9606 20161208 CAFA UniProtKB:Q92886
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q9H2S9 IKZF4 involved_in GO:0051260 PMID:15491138 IMP P Zinc finger protein Eos IKZF4|KIAA1782|ZNFN1A4 protein taxon:9606 20170111 CAFA UniProtKB:Q9H2S9
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q9NVS9 PNPO enables GO:0042803 PMID:12824491 IDA F Pyridoxine-5'-phosphate oxidase PNPO protein taxon:9606 20161020 CAFA UniProtKB:Q9NVS9
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q9Y3M2 CBY1 enables GO:0042803 PMID:21182262 IDA F Protein chibby homolog 1 CBY1|ARB1|C22orf2|CBY|PGEA1|HRIHFB2025 protein taxon:9606 20161110 CAFA UniProtKB:Q9Y3M2
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q9Y3M2 CBY1 involved_in GO:0051289 PMID:21182262 IDA P Protein chibby homolog 1 CBY1|ARB1|C22orf2|CBY|PGEA1|HRIHFB2025 protein taxon:9606 20161110 CAFA UniProtKB:Q9Y3M2
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P21758 MSR1 involved_in GO:0070207 PMID:11785981 IMP P Macrophage scavenger receptor types I and II MSR1 protein taxon:9913 20161011 CAFA UniProtKB:P21758
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P21793 DCN enables GO:0042803 PMID:15501918 IDA F Decorin DCN protein taxon:9913 20161104 CAFA UniProtKB:P21793
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P80457 XDH enables GO:0042803 PMID:11005854 IDA F Xanthine dehydrogenase/oxidase XDH protein taxon:9913 20161101 CAFA UniProtKB:P80457
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB Q28181 CNGB1 enables GO:0042803 PMID:16280326 IDA F Cyclic nucleotide-gated channel beta-1 CNGB1|CNCG4 protein taxon:9913 20161101 CAFA UniProtKB:Q28181
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`AGI_LocusCode AT1G32060 At1g32060 enables GO:0042803 PMID:16258009 IDA F Phosphoribulokinase, chloroplastic At1g32060|T12O21.4 protein taxon:3702 20161110 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`AGI_LocusCode AT1G32060 At1g32060 enables GO:0042803 PMID:17947231 IDA F Phosphoribulokinase, chloroplastic At1g32060|T12O21.4 protein taxon:3702 20161110 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`AGI_LocusCode AT3G26650 GAPA1 enables GO:0042803 PMID:22514274 IDA F Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic At3g26650|GAPA|GAPA1|MLJ15.4|MLJ15_5 protein taxon:3702 20161110 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`AGI_LocusCode AT3G26650 GAPA1 involved_in GO:0051289 PMID:16258009 IDA P Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic At3g26650|GAPA|GAPA1|MLJ15.4|MLJ15_5 protein taxon:3702 20161110 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`AGI_LocusCode AT3G26650 GAPA1 involved_in GO:0051289 PMID:17947231 IDA P Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic At3g26650|GAPA|GAPA1|MLJ15.4|MLJ15_5 protein taxon:3702 20161110 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`AGI_LocusCode AT3G26650 GAPA1 involved_in GO:0051289 PMID:22514274 IDA P Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic At3g26650|GAPA|GAPA1|MLJ15.4|MLJ15_5 protein taxon:3702 20161110 CAFA
`
gorule-0000061
Allowed gene product to term relations (gp2term)
messages
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002325 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000003517 ZUO1 colocalizes_with GO:0015934 PMID:23036859 IDA C zuotin YGR285C protein taxon:559292 20160526 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002325 should be one of BFO:0000050. Repaired to BFO:0000050--`SGD S000003517 ZUO1 colocalizes_with GO:0015935 PMID:23036859 IDA C zuotin YGR285C protein taxon:559292 20160526 CAFA
`
gorule-0000065
Annotations to term that are candidates for obsoletion should be produce a warning
messages
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`MGI MGI:1913771 Rwdd1 involved_in GO:2000825 PMID:18761815 IMP P RWD domain containing 1 2610002D06Rik|2700069A07Rik protein taxon:10090 20161115 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`RGD 61829 Ptma involved_in GO:0051092 PMID:11897665 IGI UniProtKB:Q92793 P prothymosin alpha protein taxon:10116 20160819 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`RGD 70500 Mapk1 involved_in GO:0006468 PMID:19524539 IMP P mitogen activated protein kinase 1 protein taxon:10116 20170119 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB P02686 MBP involved_in GO:1904685 PMID:22524708 IDA P Myelin basic protein MBP protein taxon:9606 20190910 CAFA occurs_in(CL:0002618),has_input(UniProtKB:P08253) UniProtKB:P02686
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB P07602 PSAP involved_in GO:1903771 PMID:1454804 IDA P Prosaposin PSAP|GLBA|SAP1 protein taxon:9606 20210204 CAFA UniProtKB:P07602
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB P17612 PRKACA involved_in GO:0018105 PMID:11029056 IDA P cAMP-dependent protein kinase catalytic subunit alpha PRKACA|PKACA protein taxon:9606 20160919 CAFA UniProtKB:P17612
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB P29375 KDM5A involved_in GO:0051090 PMID:18270511 IMP P Lysine-specific demethylase 5A KDM5A|JARID1A|RBBP2|RBP2 protein taxon:9606 20161109 CAFA has_input(UniProtKB:P25440) UniProtKB:P29375
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB P35638 DDIT3 involved_in GO:0051091 PMID:18534616 IMP P DNA damage-inducible transcript 3 protein DDIT3|CHOP|CHOP10|GADD153 protein taxon:9606 20170113 CAFA has_input(UniProtKB:P05412) UniProtKB:P35638
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB P35638 DDIT3 involved_in GO:0051091 PMID:18534616 IMP P DNA damage-inducible transcript 3 protein DDIT3|CHOP|CHOP10|GADD153 protein taxon:9606 20170113 CAFA has_input(UniProtKB:P14410) UniProtKB:P35638
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB P46527 CDKN1B involved_in GO:1904030 PMID:8684460 IMP P Cyclin-dependent kinase inhibitor 1B CDKN1B|KIP1|p27 protein taxon:9606 20160817 CAFA UniProtKB:P46527
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB P62328 TMSB4X involved_in GO:1905273 PMID:21106936 IDA P Thymosin beta-4 TMSB4X|TB4X|THYB4|TMSB4 protein taxon:9606 20230531 CAFA occurs_in(CL:0002618),has_input(UniProtKB:P25705),regulates(GO:0043534)|occurs_in(CL:0002618),has_input(UniProtKB:P06576),regulates(GO:0043534) UniProtKB:P62328
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB P62829 RPL23 involved_in GO:1904667 PMID:15314173 IDA P Large ribosomal subunit protein uL14 RPL23 protein taxon:9606 20170125 CAFA UniProtKB:P62829
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB Q13237 PRKG2 involved_in GO:0006468 PMID:15905169 IMP P cGMP-dependent protein kinase 2 PRKG2|PRKGR2 protein taxon:9606 20161107 CAFA has_input(UniProtKB:P35521) UniProtKB:Q13237
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB Q13976 PRKG1 NOT|involved_in GO:0006468 PMID:15905169 IDA P cGMP-dependent protein kinase 1 PRKG1|PRKG1B|PRKGR1A|PRKGR1B protein taxon:9606 20161107 CAFA UniProtKB:Q13976
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB Q14061 COX17 involved_in GO:1904960 PMID:19393246 IMP P Cytochrome c oxidase copper chaperone COX17 protein taxon:9606 20170117 CAFA UniProtKB:Q14061
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB Q14318 FKBP8 involved_in GO:0001933 PMID:15733859 IMP P Peptidyl-prolyl cis-trans isomerase FKBP8 FKBP8|FKBP38 protein taxon:9606 20161213 CAFA UniProtKB:Q14318
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB Q14722 KCNAB1 involved_in GO:1903817 PMID:10585425 IMP P Voltage-gated potassium channel subunit beta-1 KCNAB1|KCNA1B protein taxon:9606 20161129 CAFA UniProtKB:Q14722
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB Q9H227 GBA3 involved_in GO:1903017 PMID:26193330 IDA P Cytosolic beta-glucosidase GBA3|CBG|CBGL1 protein taxon:9606 20161209 CAFA UniProtKB:Q9H227
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB Q9NR00 TCIM involved_in GO:1900020 PMID:15087392 IDA P Transcriptional and immune response regulator TCIM|C8orf4|TC1 protein taxon:9606 20170110 CAFA UniProtKB:Q9NR00
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB Q9NYB0 TERF2IP involved_in GO:0001933 PMID:23178297 IMP P Telomeric repeat-binding factor 2-interacting protein 1 TERF2IP|DRIP5|RAP1|PP8000 protein taxon:9606 20161208 CAFA UniProtKB:Q9NYB0
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB Q9P2J5 LARS1 involved_in GO:0043547 PMID:22424946 IMP P Leucine--tRNA ligase, cytoplasmic LARS1|KIAA1352|LARS protein taxon:9606 20170123 CAFA UniProtKB:Q9P2J5
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`WB WBGene00002191 kin-3 involved_in GO:0018105 PMID:1304892 IDA P Casein kinase II subunit alpha B0205.7|kin-3 protein taxon:6239 20160919 CAFA
`
- WARNING - Violates GO Rule:GORULE:0000065: Annotations to term that are candidates for obsoletion should be removed--`UniProtKB P00974 P00974 involved_in GO:1900004 PMID:4338 IDA P Pancreatic trypsin inhibitor protein taxon:9913 20161025 CAFA UniProtKB:P00974
`