GORULE violations assigned by ARUK-UCL

Contents

gorule-0000001 GAF lines are parsed according to GAF 2.2 specifications

gorule-0000008 No annotations should be made to uninformative high level terms

gorule-0000020 Automatic repair of annotations to merged or obsoleted terms

gorule-0000046 The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000061 Allowed gene product to term relations (gp2term)

MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.2 specifications

• total: 8

messages

• WARNING - Invalid subject type:defaulting to 'gene_product'--`RNAcentral URS0000812128_9606 URS0000812128_9606 acts_upstream_of GO:0051897 PMID:31574452 IMP P Homo sapiens (human) H19 imprinted maternally expressed transcript sRNA taxon:9606 20200821 ARUK-UCL occurs_in(CL:0000182) `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`RNAcentral URS0000812128_9606 URS0000812128_9606 acts_upstream_of GO:1900017 PMID:31574452 IMP P Homo sapiens (human) H19 imprinted maternally expressed transcript sRNA taxon:9606 20200821 ARUK-UCL has_input(UniProtKB:P01579),occurs_in(CL:0000182)|has_input(UniProtKB:P05231),occurs_in(CL:0000182)|has_input(UniProtKB:Q14116),occurs_in(CL:0000182) `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`RNAcentral URS0000812128_9606 URS0000812128_9606 acts_upstream_of GO:1903428 PMID:31574452 IMP P Homo sapiens (human) H19 imprinted maternally expressed transcript sRNA taxon:9606 20200821 ARUK-UCL occurs_in(CL:0000182) `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`RNAcentral URS0000812128_9606 URS0000812128_9606 acts_upstream_of GO:1903945 PMID:31574452 IMP P Homo sapiens (human) H19 imprinted maternally expressed transcript sRNA taxon:9606 20200821 ARUK-UCL `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`RNAcentral URS0000812128_9606 URS0000812128_9606 acts_upstream_of GO:2000378 PMID:31574452 IMP P Homo sapiens (human) H19 imprinted maternally expressed transcript sRNA taxon:9606 20230717 ARUK-UCL occurs_in(CL:0000182) `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`RNAcentral URS0000812128_9606 URS0000812128_9606 acts_upstream_of GO:2001170 PMID:31574452 IMP P Homo sapiens (human) H19 imprinted maternally expressed transcript sRNA taxon:9606 20200821 ARUK-UCL occurs_in(CL:0000182) `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`RNAcentral URS0000812128_9606 URS0000812128_9606 involved_in GO:0035196 PMID:31574452 IMP P Homo sapiens (human) H19 imprinted maternally expressed transcript sRNA taxon:9606 20200821 ARUK-UCL has_input(RNAcentral:URS00004E5112_9606),occurs_in(CL:0000182) `
• WARNING - Invalid subject type:defaulting to 'gene_product'--`RNAcentral URS0000812128_9606 URS0000812128_9606 involved_in GO:0098586 PMID:31574452 IMP P Homo sapiens (human) H19 imprinted maternally expressed transcript sRNA taxon:9606|taxon:10407 20200821 ARUK-UCL occurs_in(CL:0000182) `

gorule-0000008

No annotations should be made to uninformative high level terms

• total: 46

messages

• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:97321 Ngf involved_in GO:0043388 PMID:10362258 IMP P Beta-nerve growth factor protein taxon:10090 20180124 ARUK-UCL has_input(UniProtKB:B2RWS6),has_input(UniProtKB:P38936),has_input(CHEBI:4705)|has_input(UniProtKB:O89090),has_input(UniProtKB:P38936),has_input(CHEBI:4705)|has_input(UniProtKB:O70494),has_input(UniProtKB:P38936),has_input(CHEBI:4705) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:95629 Slc6a13 enables GO:0005368 PMID:22896705 IMP F Sodium- and chloride-dependent GABA transporter 2 protein taxon:10090 20200605 ARUK-UCL part_of(UBERON:0002107) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:87904 Actb involved_in GO:0032091 PMID:19118186 IDA P Actin, cytoplasmic 1 protein taxon:10090 20171103 ARUK-UCL has_input(UniProtKB:P61809),has_input(UniProtKB:P49615) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1341865 Mark3 involved_in GO:0032092 PMID:9543386 ISS UniProtKB:P27448 P MAP/microtubule affinity-regulating kinase 3 protein taxon:10090 20180328 ARUK-UCL has_input(UniProtKB:P48967),has_input(UniProtKB:P63101) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:2447658 Disc1 involved_in GO:0032091 PMID:26078884 IDA P Disrupted in schizophrenia 1 homolog protein taxon:10090 20170814 ARUK-UCL has_input(UniProtKB:P97924),has_input(UniProtKB:Q99K10) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O00501 CLDN5 involved_in GO:0032092 PMID:25323998 IMP P Claudin-5 CLDN5|AWAL|TMVCF protein taxon:9606 20190702 ARUK-UCL occurs_in(CL:0002585),has_input(UniProtKB:O95832),has_input(UniProtKB:P57739)|occurs_in(CL:0002586),has_input(UniProtKB:O95832),has_input(UniProtKB:P57739) UniProtKB:O00501 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O43504 LAMTOR5 acts_upstream_of GO:1905636 PMID:21343296 IDA P Ragulator complex protein LAMTOR5 LAMTOR5|HBXIP|XIP protein taxon:9606 20191029 ARUK-UCL has_input(UniProtKB:Q04206) UniProtKB:O43504 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O95816 BAG2 involved_in GO:0032091 PMID:16207813 IDA P BAG family molecular chaperone regulator 2 BAG2 protein taxon:9606 20180305 ARUK-UCL has_input(UniProtKB:Q9UNE7),has_input(UniProtKB:P62837),negatively_regulates(GO:0061630) UniProtKB:O95816 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P01138 NGF involved_in GO:0043388 PMID:10362258 ISS UniProtKB:P01139 P Beta-nerve growth factor NGF|NGFB protein taxon:9606 20180124 ARUK-UCL has_input(UniProtKB:Q09472),has_input(UniProtKB:P38936),has_input(CHEBI:4705)|has_input(UniProtKB:P08047),has_input(UniProtKB:P38936),has_input(CHEBI:4705)|has_input(UniProtKB:Q02447),has_input(UniProtKB:P38936),has_input(CHEBI:4705) UniProtKB:P01138 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P02649 APOE involved_in GO:1905860 PMID:8300609 IDA P Apolipoprotein E APOE protein taxon:9606 20170123 ARUK-UCL has_input(GO:0034361) UniProtKB:P02649 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P10145 CXCL8 acts_upstream_of_or_within GO:0031328 PMID:29048659 IDA P Interleukin-8 CXCL8|IL8 protein taxon:9606 20200526 ARUK-UCL has_input(UniProtKB:P02751) UniProtKB:P10145 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P10145 CXCL8 acts_upstream_of_or_within GO:0031328 PMID:29048659 IDA P Interleukin-8 CXCL8|IL8 protein taxon:9606 20200526 ARUK-UCL has_input(UniProtKB:P08670) UniProtKB:P10145 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P11137 MAP2 involved_in GO:1904527 GO_REF:0000024 ISS UniProtKB:P15146 P Microtubule-associated protein 2 MAP2 protein taxon:9606 20210816 ARUK-UCL has_input(UniProtKB:P33176) UniProtKB:P11137 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P13866 SLC5A1 located_in GO:0043229 GO_REF:0000024 ISS UniProtKB:P53790 C Sodium/glucose cotransporter 1 SLC5A1|NAGT|SGLT1 protein taxon:9606 20200323 ARUK-UCL part_of(CL:0000540),part_of(UBERON:0000955)|part_of(CL:2000044),part_of(UBERON:0000955) UniProtKB:P13866 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P16615 ATP2A2 involved_in GO:1900121 PMID:18068335 IMP P Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 ATP2A2|ATP2B protein taxon:9606 20191001 ARUK-UCL occurs_in(CL:0000233),part_of(GO:0006874) UniProtKB:P16615 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P24001 IL32 acts_upstream_of GO:1905636 PMID:23729669 IDA P Interleukin-32 IL32|NK4|TAIF protein taxon:9606 20211118 ARUK-UCL has_input(UniProtKB:Q04206) UniProtKB:P24001-1 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P27448 MARK3 involved_in GO:0032092 PMID:9543386 IDA P MAP/microtubule affinity-regulating kinase 3 MARK3|CTAK1|EMK2 protein taxon:9606 20180328 ARUK-UCL has_input(UniProtKB:P30307),has_input(UniProtKB:P63104) UniProtKB:P27448 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P31641 SLC6A6 enables GO:0005368 GO_REF:0000024 ISS UniProtKB:P31643 F Sodium- and chloride-dependent taurine transporter SLC6A6 protein taxon:9606 20200602 ARUK-UCL has_target_start_location(GO:0009897),has_target_end_location(GO:0009898) UniProtKB:P31641 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P31641 SLC6A6 enables GO:0005368 PMID:19074966 IDA F Sodium- and chloride-dependent taurine transporter SLC6A6 protein taxon:9606 20200603 ARUK-UCL has_target_start_location(GO:0009897),has_target_end_location(GO:0009898) UniProtKB:P31641 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P31641 SLC6A6 enables GO:0005368 PMID:23519128 IMP F Sodium- and chloride-dependent taurine transporter SLC6A6 protein taxon:9606 20200602 ARUK-UCL occurs_in(CL:0000523),has_target_start_location(GO:0009897),has_target_end_location(GO:0009898) UniProtKB:P31641 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P31749 AKT1 involved_in GO:0032091 PMID:18292230 IMP P RAC-alpha serine/threonine-protein kinase AKT1|PKB|RAC protein taxon:9606 20180201 ARUK-UCL has_input(UniProtKB:Q9UNE7),has_input(UniProtKB:P10636) UniProtKB:P31749 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P51451 BLK involved_in GO:0032092 PMID:23555801 IMP P Tyrosine-protein kinase Blk BLK protein taxon:9606 20210420 ARUK-UCL has_input(UniProtKB:P16885),has_input(UniProtKB:Q8NDB2),part_of(GO:0050853) UniProtKB:P51451 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P60709 ACTB involved_in GO:0032091 GO_REF:0000024 ISS UniProtKB:P60710 P Actin, cytoplasmic 1 ACTB protein taxon:9606 20171103 ARUK-UCL has_input(UniProtKB:Q15078),has_input(UniProtKB:Q00535) UniProtKB:P60709 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P62714 PPP2CB involved_in GO:1904528 GO_REF:0000024 ISS UniProtKB:P62716 P Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform PPP2CB protein taxon:9606 20171208 ARUK-UCL has_input(UniProtKB:P46821) UniProtKB:P62714 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P67775 PPP2CA involved_in GO:1904526 PMID:28386764 NAS P Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform PPP2CA protein taxon:9606 20180122 ARUK-UCL has_input(UniProtKB:P10636) UniProtKB:P67775 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P67775 PPP2CA involved_in GO:1904528 GO_REF:0000024 ISS UniProtKB:P63331 P Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform PPP2CA protein taxon:9606 20171208 ARUK-UCL has_input(UniProtKB:P46821)|has_input(UniProtKB:P11137) UniProtKB:P67775 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q07954 LRP1 involved_in GO:0032092 PMID:23386614 IGI UniProtKB:P04925 P Prolow-density lipoprotein receptor-related protein 1 LRP1|A2MR|APR protein taxon:9606 20170626 ARUK-UCL has_input(ComplexPortal:CPX-1134),has_input(UniProtKB:P04925) UniProtKB:Q07954 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q13526 PIN1 involved_in GO:0032092 PMID:24964035 IDA P Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 PIN1 protein taxon:9606 20180516 ARUK-UCL has_input(UniProtKB:Q15796),has_input(UniProtKB:P10636) UniProtKB:Q13526 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q5T7W0 ZNF618 involved_in GO:0035563 PMID:27129234 IDA P Zinc finger protein 618 ZNF618|KIAA1952 protein taxon:9606 20200828 ARUK-UCL UniProtKB:Q5T7W0 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q5TCY1 TTBK1 involved_in GO:0032091 PMID:19118186 IMP P Tau-tubulin kinase 1 TTBK1|BDTK|KIAA1855 protein taxon:9606 20171103 ARUK-UCL has_input(UniProtKB:Q15078),has_input(UniProtKB:P60709) UniProtKB:Q5TCY1 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q6IQ55 TTBK2 involved_in GO:1904527 PMID:26323690 IDA P Tau-tubulin kinase 2 TTBK2|KIAA0847 protein taxon:9606 20171106 ARUK-UCL has_input(UniProtKB:O00139) UniProtKB:Q6IQ55 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q7KZI7 MARK2 involved_in GO:1904526 PMID:24251416 ISS UniProtKB:O08679 P Serine/threonine-protein kinase MARK2 MARK2|EMK1 protein taxon:9606 20180515 ARUK-UCL has_input(UniProtKB:P10636) UniProtKB:Q7KZI7 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q7Z2H8 SLC36A1 enables GO:0005368 PMID:19074966 IDA F Proton-coupled amino acid transporter 1 SLC36A1|PAT1 protein taxon:9606 20200603 ARUK-UCL has_target_start_location(GO:0009897),has_target_end_location(GO:0009898) UniProtKB:Q7Z2H8 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q93084 ATP2A3 involved_in GO:1900121 PMID:18068335 IMP P Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 ATP2A3 protein taxon:9606 20191001 ARUK-UCL occurs_in(CL:0000233),part_of(GO:0006874) UniProtKB:Q93084 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9NRI5 DISC1 involved_in GO:0032091 GO_REF:0000024 ISS UniProtKB:Q811T9 P Disrupted in schizophrenia 1 protein DISC1|KIAA0457 protein taxon:9606 20170814 ARUK-UCL has_input(UniProtKB:P97924),has_input(UniProtKB:Q99K10) UniProtKB:Q9NRI5 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9NSD5 SLC6A13 enables GO:0005368 GO_REF:0000024 ISS UniProtKB:P31646 F Sodium- and chloride-dependent GABA transporter 2 SLC6A13|GAT2 protein taxon:9606 20200608 ARUK-UCL part_of(CL:0000182),has_target_start_location(GO:0009897),has_target_end_location(GO:0009898) UniProtKB:Q9NSD5 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9NSD5 SLC6A13 enables GO:0005368 GO_REF:0000024 ISS UniProtKB:P31649 F Sodium- and chloride-dependent GABA transporter 2 SLC6A13|GAT2 protein taxon:9606 20200605 ARUK-UCL part_of(UBERON:0002107) UniProtKB:Q9NSD5 `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`ComplexPortal CPX-1070 abeta-42_human involved_in GO:1904426 PMID:20395454 IGI UniProtKB:P07550 P Amyloid-beta protein 42 complex beta-amyloid protein 42 homodimer|beta-amyloid protein 42 complex|beta-amyloid-42 complex|beta amyloid protein 42 complex|amyloid-beta-42 complex|amyloid beta protein 42 complex|amyloid-beta protein 42 homodimer|amyloid-beta-42 homodimer|amyloid beta protein 42 homodimer|beta-amyloid-42 homodimer|beta amyloid protein 42 homodimer|APP dimer|Abeta protein 42 complex protein_complex taxon:9606 20200724 ARUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`ComplexPortal CPX-1120 abeta-40-42-oligomer_human involved_in GO:0032092 PMID:29518356 IDA P Amyloid-beta protein 40/42 oligomeric complex fibrillar amyloid-beta oligomer|Annular protofibril complex|Amyloid-beta fibrils|beta-amyloid protein 40/42 heterooligomer|beta-amyloid protein 40/42 complex|beta-amyloid-40/42 complex|beta amyloid protein 40/42 complex|amyloid-beta-40/42 complex|amyloid beta protein 40/42 complex|amyloid-beta protein 40/42 heterooligomer|amyloid-beta-40/42 heterooligomer|amyloid beta protein 40/42 heterooligomer|beta-amyloid-40/42 heterooligomer|beta amyloid protein 40/42 heterooligomer|Abeta protein 40/42 complex|APP oligomer|Type 1 amyloid-beta oligomer|ADDL complex|pre-fibrillar amyloid-beta oligomer|prefibrillar amyloid-beta oligomer|Type 2 amyloid-beta oligomer protein_complex taxon:9606 20181212 ARUK-UCL occurs_in(CL:0000129),has_input(UniProtKB:O43914),has_input(UniProtKB:Q9NZC2) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`ComplexPortal CPX-1134 abeta-42-oligomer_human involved_in GO:0032092 PMID:24658113 IDA P Amyloid-beta protein 42 oligomeric complex pre-fibrillar amyloid-beta oligomer|prefibrillar amyloid-beta oligomer|Type 2 amyloid-beta oligomer|fibrillar amyloid-beta oligomer|Annular protofibril complex|Amyloid-beta fibrils|beta-amyloid protein 42 heterooligomer|beta-amyloid protein 42 complex|beta-amyloid-42 complex|beta amyloid protein 42 complex|amyloid-beta-42 complex|amyloid beta protein 42 complex|amyloid-beta protein 42 heterooligomer|amyloid-beta-42 heterooligomer|amyloid beta protein 42 heterooligomer|beta-amyloid-42 heterooligomer|beta amyloid protein 42 heterooligomer|Abeta protein 42 complex|APP oligomer|Type 1 amyloid-beta oligomer|ADDL complex protein_complex taxon:9606 20170627 ARUK-UCL occurs_in(CL:0002608),has_input(UniProtKB:P54764),has_input(UniProtKB:P00519) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`ComplexPortal CPX-1134 abeta-42-oligomer_human involved_in GO:0044092 PMID:23386614 IDA P Amyloid-beta protein 42 oligomeric complex pre-fibrillar amyloid-beta oligomer|prefibrillar amyloid-beta oligomer|Type 2 amyloid-beta oligomer|fibrillar amyloid-beta oligomer|Annular protofibril complex|Amyloid-beta fibrils|beta-amyloid protein 42 heterooligomer|beta-amyloid protein 42 complex|beta-amyloid-42 complex|beta amyloid protein 42 complex|amyloid-beta-42 complex|amyloid beta protein 42 complex|amyloid-beta protein 42 heterooligomer|amyloid-beta-42 heterooligomer|amyloid beta protein 42 heterooligomer|beta-amyloid-42 heterooligomer|beta amyloid protein 42 heterooligomer|Abeta protein 42 complex|APP oligomer|Type 1 amyloid-beta oligomer|ADDL complex protein_complex taxon:9606 20170626 ARUK-UCL has_input(UniProtKB:P04156),positively_regulates(GO:0034205) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`RNAcentral URS00003B95DA_9606 URS00003B95DA_9606 involved_in GO:1900131 PMID:24608080 IDA P Homo sapiens (human) hsa-miR-27a-3p miRNA taxon:9606 20190116 ARUK-UCL occurs_in(CL:0000517) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`RNAcentral URS000049A7EB_9606 URS000049A7EB_9606 acts_upstream_of GO:0031327 PMID:29048659 IDA P Homo sapiens (human) hsa-miR-520c-3p miRNA taxon:9606 20200130 ARUK-UCL has_input(UniProtKB:P08670) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`RNAcentral URS00004AE8D3_9606 URS00004AE8D3_9606 acts_upstream_of_or_within GO:0031327 PMID:30210926 IDA P Homo sapiens (human) hsa-miR-506-3p miRNA taxon:9606 20200312 ARUK-UCL has_input(UniProtKB:P46013) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`RNAcentral URS00004AE8D3_9606 URS00004AE8D3_9606 involved_in GO:0031327 PMID:30210926 IDA P Homo sapiens (human) hsa-miR-506-3p miRNA taxon:9606 20200312 ARUK-UCL has_input(UniProtKB:P08670) `
• WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`RNAcentral URS000059311D_9606 URS000059311D_9606 involved_in GO:1900131 PMID:24608080 IDA P Homo sapiens (human) hsa-miR-27b-3p miRNA taxon:9606 20190116 ARUK-UCL occurs_in(CL:0000517) `

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

• total: 29

messages

• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P49768 PSEN1 involved_in GO:0007611 PMID:20445063 IGI UniProtKB:P04156,UniProtKB:P05067 P Presenilin-1 PSEN1|AD3|PS1|PSNL1 protein taxon:9606 20220125 ARUK-UCL happens_during(GO:0007568) UniProtKB:P49768 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`RGD 620458 Cx3cl1 involved_in GO:1903979 PMID:19627440|RGD:13673772 IDA P C-X3-C motif chemokine ligand 1 gene taxon:10116 20180605 ARUK-UCL occurs_in(CL:0000540),happens_during(GO:0007571) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P78423 CX3CL1 involved_in GO:1903979 GO_REF:0000024 ISS UniProtKB:O55145 P Fractalkine CX3CL1|FKN|NTT|SCYD1|A-152E5.2 protein taxon:9606 20180605 ARUK-UCL occurs_in(CL:0000540),happens_during(GO:0007571) UniProtKB:P78423 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`RGD 620238 Abca2 involved_in GO:0071072 PMID:24201375|RGD:14697729 IMP P ATP binding cassette subfamily A member 2 gene taxon:10116 20190726 ARUK-UCL occurs_in(CL:0002573),causally_upstream_of(GO:0010872),has_output(CHEBI:64583) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`RGD 620238 Abca2 involved_in GO:0090155 PMID:24201375|RGD:14697729 IMP P ATP binding cassette subfamily A member 2 gene taxon:10116 20190726 ARUK-UCL occurs_in(CL:0002573),causally_upstream_of(GO:0010872),has_output(CHEBI:64583) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q9BZC7 ABCA2 involved_in GO:0071072 PMID:24201375 IDA P ATP-binding cassette sub-family A member 2 ABCA2|ABC2|KIAA1062 protein taxon:9606 20190726 ARUK-UCL occurs_in(CL:0000540),causally_upstream_of(GO:0010872),has_output(CHEBI:64583) UniProtKB:Q9BZC7 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q9BZC7 ABCA2 involved_in GO:0090155 PMID:24201375 IDA P ATP-binding cassette sub-family A member 2 ABCA2|ABC2|KIAA1062 protein taxon:9606 20190726 ARUK-UCL occurs_in(CL:0002573),causally_upstream_of(GO:0010872),has_output(CHEBI:64583) UniProtKB:Q9BZC7 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q9BZC7 ABCA2 involved_in GO:0099040 PMID:24201375 IDA P ATP-binding cassette sub-family A member 2 ABCA2|ABC2|KIAA1062 protein taxon:9606 20190726 ARUK-UCL occurs_in(CL:0000540),part_of(GO:0090155),part_of(GO:0071072),causally_upstream_of(GO:0010872) UniProtKB:Q9BZC7 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:97810 Ptprc involved_in GO:0044855 PMID:15661907 IGI UniProtKB:P05480 P Receptor-type tyrosine-protein phosphatase C protein taxon:10090 20180724 ARUK-UCL occurs_in(CL:0000084),has_end_location(GO:0042101),part_of(GO:0031668),occurs_in(GO:0098857) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P08575 PTPRC involved_in GO:0044855 GO_REF:0000024 ISS UniProtKB:P06800 P Receptor-type tyrosine-protein phosphatase C PTPRC|CD45 protein taxon:9606 20180724 ARUK-UCL occurs_in(CL:0000084),has_end_location(GO:0042101),part_of(GO:0031668),occurs_in(GO:0098857) UniProtKB:P08575 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P49841 GSK3B involved_in GO:0032515 PMID:28386764 TAS P Glycogen synthase kinase-3 beta GSK3B protein taxon:9606 20180122 ARUK-UCL has_input(UniProtKB:P67775) UniProtKB:P49841 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P42345 MTOR involved_in GO:0032516 PMID:28386764 TAS P Serine/threonine-protein kinase mTOR MTOR|FRAP|FRAP1|FRAP2|RAFT1|RAPT1 protein taxon:9606 20180122 ARUK-UCL has_input(UniProtKB:P67775) UniProtKB:P42345 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:894311 Lilrb3 involved_in GO:0035307 PMID:24052308 IGI ComplexPortal:CPX-1134 P Leukocyte immunoglobulin-like receptor subfamily B member 3 protein taxon:10090 20170725 ARUK-UCL occurs_in(CL:0010012),has_input(UniProtKB:P18760) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P33151 CDH5 involved_in GO:0035307 PMID:11950700 IMP P Cadherin-5 CDH5 protein taxon:9606 20190516 ARUK-UCL UniProtKB:P33151 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q13526 PIN1 involved_in GO:0035307 PMID:23362255 TAS P Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 PIN1 protein taxon:9606 20180202 ARUK-UCL has_input(UniProtKB:P10636) UniProtKB:Q13526 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q8N423 LILRB2 involved_in GO:0035307 PMID:24052308 ISS UniProtKB:P97484 P Leukocyte immunoglobulin-like receptor subfamily B member 2 LILRB2|ILT4|LIR2|MIR10 protein taxon:9606 20170725 ARUK-UCL occurs_in(CL:0010012),has_input(UniProtKB:P23528) UniProtKB:Q8N423 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`ComplexPortal CPX-1134 abeta-42-oligomer_human involved_in GO:0035307 PMID:24052308 IGI UniProtKB:P97484 P Amyloid-beta protein 42 oligomeric complex pre-fibrillar amyloid-beta oligomer|prefibrillar amyloid-beta oligomer|Type 2 amyloid-beta oligomer|fibrillar amyloid-beta oligomer|Annular protofibril complex|Amyloid-beta fibrils|beta-amyloid protein 42 heterooligomer|beta-amyloid protein 42 complex|beta-amyloid-42 complex|beta amyloid protein 42 complex|amyloid-beta-42 complex|amyloid beta protein 42 complex|amyloid-beta protein 42 heterooligomer|amyloid-beta-42 heterooligomer|amyloid beta protein 42 heterooligomer|beta-amyloid-42 heterooligomer|beta amyloid protein 42 heterooligomer|Abeta protein 42 complex|APP oligomer|Type 1 amyloid-beta oligomer|ADDL complex protein_complex taxon:9606 20240201 ARUK-UCL occurs_in(CL:0010012),has_input(UniProtKB:P23528) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P41594 GRM5 involved_in GO:1904646 GO_REF:0000024 ISS UniProtKB:Q3UVX5 P Metabotropic glutamate receptor 5 GRM5|GPRC1E|MGLUR5 protein taxon:9606 20240328 ARUK-UCL occurs_in(CL:0000540),regulates(GO:0035584) UniProtKB:P41594 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`RGD 621681 P2ry12 involved_in GO:0051897 PMID:17299767|RGD:13673751 IMP P purinergic receptor P2Y12 gene taxon:10116 20230726 ARUK-UCL occurs_in(CL:0000129),part_of(GO:0071318),part_of(GO:0021801),part_of(GO:0035585) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P35222 CTNNB1 enables GO:1990226 GO_REF:0000024 ISS UniProtKB:Q02248 F Catenin beta-1 CTNNB1|CTNNB|OK/SW-cl.35|PRO2286 protein taxon:9606 20210113 ARUK-UCL occurs_in(GO:0005634),occurs_in(CL:0002322),has_input(UniProtKB:O15047),part_of(GO:0051571) UniProtKB:P35222 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`RNAcentral URS000075D95B_9606 URS000075D95B_9606 enables GO:0140463 PMID:32482714 TAS F Homo sapiens (human) X inactive specific transcript (XIST) lncRNA taxon:9606 20230815 ARUK-UCL part_of(GO:0060820) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`RNAcentral URS0000DB8B87_9606 URS0000DB8B87_9606 enables GO:0140463 PMID:31048766 TAS F Homo sapiens (human) X inactive specific transcript lncRNA taxon:9606 20230530 ARUK-UCL part_of(GO:0060820)|part_of(GO:0051303) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P08138 NGFR involved_in GO:1904646 PMID:11927634 IDA P Tumor necrosis factor receptor superfamily member 16 NGFR|TNFRSF16 protein taxon:9606 20170906 ARUK-UCL positively_regulates(GO:0070265),occurs_in(CL:0000540)|positively_regulates(GO:0051402)|positively_regulates(GO:0097153),occurs_in(CL:0000540) UniProtKB:P08138 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:1196625 Fzd1 involved_in GO:0036520 PMID:21752258 IMP P Frizzled-1 protein taxon:10090 20190918 ARUK-UCL occurs_in(CL:2000097),causally_upstream_of(GO:1903204) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:1196625 Fzd1 involved_in GO:0060070 PMID:21752258 IMP P Frizzled-1 protein taxon:10090 20190918 ARUK-UCL occurs_in(CL:2000097),part_of(GO:0036520),part_of(GO:1903204) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:98953 Wnt1 involved_in GO:0060070 PMID:21752258 IMP P Proto-oncogene Wnt-1 protein taxon:10090 20190918 ARUK-UCL occurs_in(CL:2000097),part_of(GO:0036520),part_of(GO:1903204) `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P17931 LGALS3 involved_in GO:1903614 PMID:24846175 IC GO:0031334 P Galectin-3 LGALS3|MAC2 protein taxon:9606 20191216 ARUK-UCL has_input(UniProtKB:O14522) UniProtKB:P17931 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB Q09328 MGAT5 involved_in GO:1903614 PMID:24846175 IDA P Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A MGAT5|GGNT5 protein taxon:9606 20180803 ARUK-UCL has_input(UniProtKB:O14522) UniProtKB:Q09328 `
• ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P11215 ITGAM involved_in GO:0006911 GO_REF:0000024 ISS UniProtKB:P05555 P Integrin alpha-M ITGAM|CD11B|CR3A protein taxon:9606 20230717 ARUK-UCL occurs_in(CL:0000129),part_of(GO:1905114),occurs_in(UBERON:0002479),occurs_in(UBERON:0009953) UniProtKB:P11215 `

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

• total: 14

messages

• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1196458 Scarb2 enables GO:0042803 PMID:29199275 IPI UniProtKB:O35114 F Lysosome membrane protein 2 protein taxon:10090 20181031 ARUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:97275 Myod1 enables GO:0042803 PMID:10652346 IPI UniProtKB:P10085 F Myoblast determination protein 1 protein taxon:10090 20230314 ARUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:894311 Lilrb3 enables GO:0042803 PMID:24052308 IPI UniProtKB:P97484 F Leukocyte immunoglobulin-like receptor subfamily B member 3 protein taxon:10090 20230314 ARUK-UCL causally_upstream_of(GO:0001540) `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP enables GO:0042803 PMID:15447668 IPI UniProtKB:P05067-PRO_0000000092 F Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000092 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP enables GO:0042803 PMID:15447668 IPI UniProtKB:P05067-PRO_0000000093 F Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000093 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP enables GO:0042803 PMID:18568035 IPI UniProtKB:P05067-PRO_0000000092 F Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20170213 ARUK-UCL UniProtKB:P05067-PRO_0000000092 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP enables GO:0042803 PMID:22179788 IPI UniProtKB:P05067-PRO_0000000093 F Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000093 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP enables GO:0042803 PMID:23386614 IPI UniProtKB:P05067-PRO_0000000092 F Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000092 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP involved_in GO:0051260 PMID:15447668 IPI UniProtKB:P05067-PRO_0000000092 P Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000092 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP involved_in GO:0051260 PMID:15447668 IPI UniProtKB:P05067-PRO_0000000093 P Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL has_input(UniProtKB:P05067-PRO_0000000093) UniProtKB:P05067-PRO_0000000093 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP involved_in GO:0051260 PMID:18602473 IPI UniProtKB:P05067-PRO_0000000093 P Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000093 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP involved_in GO:0051260 PMID:23386614 IPI UniProtKB:P05067-PRO_0000000092 P Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL has_input(UniProtKB:P05067) UniProtKB:P05067-PRO_0000000092 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P10636 MAPT involved_in GO:0051260 PMID:26704708 IPI UniProtKB:P10636-8 P Microtubule-associated protein tau MAPT|MAPTL|MTBT1|TAU protein taxon:9606 20230314 ARUK-UCL happens_during(UBERON:0000112),happens_during(GO:0018105),occurs_in(UBERON:0002421),regulates(GO:0007611)|happens_during(UBERON:0018241),happens_during(GO:0018105),occurs_in(UBERON:0002421),regulates(GO:0007611) UniProtKB:P10636-8 `
• WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P15172 MYOD1 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P10085 F Myoblast determination protein 1 MYOD1|BHLHC1|MYF3|MYOD protein taxon:9606 20230314 ARUK-UCL UniProtKB:P15172 `

gorule-0000061

Allowed gene product to term relations (gp2term)

• total: 77

messages

• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432, RO:0002325, RO:0001025. Repaired to RO:0001025--`MGI MGI:1194883 Crx part_of GO:0000785 GO_REF:0000024 ISS UniProtKB:Q9XSK0 C Cone-rod homeobox protein protein taxon:10090 20200826 ARUK-UCL part_of(UBERON:0000966) `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432, RO:0002325, RO:0001025. Repaired to RO:0001025--`MGI MGI:98834 Tp53 part_of GO:0000785 PMID:30089260 ISS UniProtKB:P04637 C Cellular tumor antigen p53 protein taxon:10090 20210107 ARUK-UCL coincident_with(SO:0000167) `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432, RO:0002325, RO:0001025. Repaired to RO:0001025--`MGI MGI:97275 Myod1 part_of GO:0000791 PMID:10652346 IDA C Myoblast determination protein 1 protein taxon:10090 20200515 ARUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`MGI MGI:96247 Hsp90ab1 is_active_in GO:0101031 PMID:17517623 IMP C Heat shock protein HSP 90-beta protein taxon:10090 20240320 ARUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432, RO:0002325, RO:0001025. Repaired to RO:0001025--`MGI MGI:96397 Id2 part_of GO:0000791 PMID:10652346 IDA C DNA-binding protein inhibitor ID-2 protein taxon:10090 20200515 ARUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432, RO:0002325, RO:0001025. Repaired to RO:0001025--`MGI MGI:1097695 Ezh1 part_of GO:0000792 PMID:19026781 IDA C Histone-lysine N-methyltransferase EZH1 protein taxon:10090 20220104 ARUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432, RO:0002325, RO:0001025. Repaired to RO:0001025--`MGI MGI:88494 Creb1 part_of GO:0000785 PMID:20876357 IMP C Cyclic AMP-responsive element-binding protein 1 protein taxon:10090 20180721 ARUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432, RO:0002325, RO:0001025. Repaired to RO:0001025--`MGI MGI:88494 Creb1 part_of GO:0000785 PMID:23729669 IDA C Cyclic AMP-responsive element-binding protein 1 protein taxon:10090 20200319 ARUK-UCL part_of(CL:0000084) `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`MGI MGI:2442926 Mettl14 is_active_in GO:0036396 PMID:29290617 IDA C N6-adenosine-methyltransferase non-catalytic subunit protein taxon:10090 20240206 ARUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432, RO:0002325, RO:0001025. Repaired to RO:0001025--`MGI MGI:1919397 Zbtb46 part_of GO:0000785 PMID:22851594 IDA C Zinc finger and BTB domain-containing protein 46 protein taxon:10090 20210920 ARUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432, RO:0002325, RO:0001025. Repaired to RO:0001025--`MGI MGI:2443805 Bnc2 part_of GO:0000785 PMID:15081112 IDA C Zinc finger protein basonuclin-2 protein taxon:10090 20210916 ARUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432, RO:0002325, RO:0001025. Repaired to RO:0001025--`MGI MGI:1934960 Tcf23 part_of GO:0000791 PMID:10652346 IDA C Transcription factor 23 protein taxon:10090 20200515 ARUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432, RO:0002325, RO:0001025. Repaired to RO:0001025--`MGI MGI:1344336 Fiz1 part_of GO:0000785 GO_REF:0000024 ISS UniProtKB:A0A3Q1MB73 C Flt3-interacting zinc finger protein 1 protein taxon:10090 20200826 ARUK-UCL part_of(UBERON:0000966) `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0002432, RO:0002325, RO:0001025. Repaired to RO:0001025--`MGI MGI:1344336 Fiz1 part_of GO:0000785 PMID:18854042 IDA C Flt3-interacting zinc finger protein 1 protein taxon:10090 20200826 ARUK-UCL part_of(UBERON:0001789),part_of(CL:0000573)|part_of(UBERON:0001789),part_of(CL:0000604)|part_of(UBERON:0001791),part_of(CL:0000573)|part_of(UBERON:0001791),part_of(CL:0000604)|part_of(UBERON:0001792) `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`RGD 1303075 Hsp90ab1 is_active_in GO:0101031 PMID:17517623|RGD:13514081 IMP C heat shock protein 90 alpha family class B member 1 gene taxon:10116 20240320 ARUK-UCL `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`RGD 61912 Slc6a6 is_active_in GO:0098797 PMID:29491210|RGD:21201269 IPI UniProtKB:Q9JJ19 C solute carrier family 6 member 6 gene taxon:10116 20200115 ARUK-UCL part_of(UBERON:0000955) `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`RGD 708538 Nherf1 is_active_in GO:0098797 PMID:29491210|RGD:21201269 IPI UniProtKB:P31643 C NHERF family PDZ scaffold protein 1 gene taxon:10116 20200115 ARUK-UCL part_of(UBERON:0000955) `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB O00268 TAF4 part_of GO:0000785 PMID:24289924 IDA C Transcription initiation factor TFIID subunit 4 TAF4|TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135 protein taxon:9606 20210107 ARUK-UCL coincident_with(SO:0001668),existence_overlaps(GO:0034644) UniProtKB:O00268 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB O14745 NHERF1 is_active_in GO:0098797 GO_REF:0000024 ISS UniProtKB:Q9JJ19 C Na(+)/H(+) exchange regulatory cofactor NHE-RF1 NHERF1|NHERF|SLC9A3R1 protein taxon:9606 20200115 ARUK-UCL part_of(UBERON:0000955) UniProtKB:O14745 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB O43186 CRX part_of GO:0000785 GO_REF:0000024 ISS UniProtKB:Q9XSK0 C Cone-rod homeobox protein CRX|CORD2 protein taxon:9606 20200826 ARUK-UCL part_of(UBERON:0000966) UniProtKB:O43186 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB O43623 SNAI2 part_of GO:0000785 PMID:16707493 IDA C Zinc finger protein SNAI2 SNAI2|SLUG|SLUGH protein taxon:9606 20200215 ARUK-UCL UniProtKB:O43623 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB O43633 CHMP2A part_of GO:0000785 PMID:28242692 IDA C Charged multivesicular body protein 2a CHMP2A|BC2|CHMP2 protein taxon:9606 20170912 ARUK-UCL existence_overlaps(GO:0000092) UniProtKB:O43633 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB O94983 CAMTA2 part_of GO:0000785 PMID:16678093 IDA C Calmodulin-binding transcription activator 2 CAMTA2|KIAA0909 protein taxon:9606 20200611 ARUK-UCL UniProtKB:O94983 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P02649 APOE is_active_in GO:0034360 PMID:7683668 IDA C Apolipoprotein E APOE protein taxon:9606 20230531 ARUK-UCL UniProtKB:P02649 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P02649 APOE is_active_in GO:0034361 PMID:7683668 IDA C Apolipoprotein E APOE protein taxon:9606 20230531 ARUK-UCL UniProtKB:P02649 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P03372 ESR1 part_of GO:0000785 PMID:21131358 IDA C Estrogen receptor ESR1|ESR|NR3A1 protein taxon:9606 20191030 ARUK-UCL UniProtKB:P03372 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P04637 TP53 part_of GO:0000785 PMID:24289924 IDA C Cellular tumor antigen p53 TP53|P53 protein taxon:9606 20210107 ARUK-UCL coincident_with(SO:0001668),existence_overlaps(GO:0034644) UniProtKB:P04637 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P04637 TP53 part_of GO:0000785 PMID:30089260 IMP C Cellular tumor antigen p53 TP53|P53 protein taxon:9606 20210107 ARUK-UCL coincident_with(SO:0000167) UniProtKB:P04637 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P08047 SP1 part_of GO:0000785 PMID:19307576 IDA C Transcription factor Sp1 SP1|TSFP1 protein taxon:9606 20191111 ARUK-UCL part_of(CL:0000084) UniProtKB:P08047 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P08048 ZFY part_of GO:0000785 PMID:32406922 ISS UniProtKB:P17010 C Zinc finger Y-chromosomal protein ZFY protein taxon:9606 20210916 ARUK-UCL UniProtKB:P08048 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P08238 HSP90AB1 is_active_in GO:0101031 PMID:17517623 IMP C Heat shock protein HSP 90-beta HSP90AB1|HSP90B|HSPC2|HSPC3|HSPCB protein taxon:9606 20240320 ARUK-UCL UniProtKB:P08238 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P10276 RARA part_of GO:0000785 PMID:21131358 IDA C Retinoic acid receptor alpha RARA|NR1B1 protein taxon:9606 20191030 ARUK-UCL UniProtKB:P10276 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P13631 RARG part_of GO:0000785 PMID:21131358 IDA C Retinoic acid receptor gamma RARG|NR1B3 protein taxon:9606 20191030 ARUK-UCL UniProtKB:P13631 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P15172 MYOD1 part_of GO:0000791 GO_REF:0000024 ISS UniProtKB:P10085 C Myoblast determination protein 1 MYOD1|BHLHC1|MYF3|MYOD protein taxon:9606 20200515 ARUK-UCL UniProtKB:P15172 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P15336 ATF2 part_of GO:0000785 PMID:23729669 IDA C Cyclic AMP-dependent transcription factor ATF-2 ATF2|CREB2|CREBP1 protein taxon:9606 20200319 ARUK-UCL part_of(CL:0000084) UniProtKB:P15336 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P15884 TCF4 part_of GO:0000785 PMID:21880741 IDA C Transcription factor 4 TCF4|BHLHB19|ITF2|SEF2 protein taxon:9606 20210107 ARUK-UCL coincident_with(SO:0000167) UniProtKB:P15884 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P15923 TCF3 part_of GO:0000791 PMID:10652346 IDA C Transcription factor E2-alpha TCF3|BHLHB21|E2A|ITF1 protein taxon:9606 20200515 ARUK-UCL UniProtKB:P15923 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P17010 ZFX part_of GO:0000785 PMID:24831540 IDA C Zinc finger X-chromosomal protein ZFX protein taxon:9606 20210916 ARUK-UCL UniProtKB:P17010 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P18146 EGR1 part_of GO:0000785 PMID:19307576 IDA C Early growth response protein 1 EGR1|KROX24|ZNF225 protein taxon:9606 20191111 ARUK-UCL part_of(CL:0000084) UniProtKB:P18146 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P19793 RXRA part_of GO:0000785 PMID:25592151 IDA C Retinoic acid receptor RXR-alpha RXRA|NR2B1 protein taxon:9606 20200818 ARUK-UCL UniProtKB:P19793 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P20226 TBP part_of GO:0000785 PMID:24289924 IDA C TATA-box-binding protein TBP|GTF2D1|TF2D|TFIID protein taxon:9606 20210107 ARUK-UCL coincident_with(SO:0001668),existence_overlaps(GO:0034644) UniProtKB:P20226 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P21675 TAF1 part_of GO:0000785 PMID:24289924 IDA C Transcription initiation factor TFIID subunit 1 TAF1|BA2R|CCG1|CCGS|TAF2A protein taxon:9606 20210107 ARUK-UCL coincident_with(SO:0001668),existence_overlaps(GO:0034644)|existence_overlaps(GO:0034644),coincident_with(SO:0000315) UniProtKB:P21675 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P31641 SLC6A6 is_active_in GO:0098797 GO_REF:0000024 ISS UniProtKB:P31643 C Sodium- and chloride-dependent taurine transporter SLC6A6 protein taxon:9606 20200115 ARUK-UCL part_of(UBERON:0000955) UniProtKB:P31641 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P39656 DDOST is_active_in GO:0008250 PMID:22467853 IDA C Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit DDOST|KIAA0115|OST48|OK/SW-cl.45 protein taxon:9606 20200131 ARUK-UCL UniProtKB:P39656 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P46977 STT3A is_active_in GO:0008250 PMID:22467853 IDA C Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A STT3A|ITM1|TMC protein taxon:9606 20200131 ARUK-UCL UniProtKB:P46977 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P53990 IST1 part_of GO:0000785 PMID:28242692 IDA C IST1 homolog IST1|KIAA0174 protein taxon:9606 20170912 ARUK-UCL existence_overlaps(GO:0000092) UniProtKB:P53990 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P61803 DAD1 is_active_in GO:0008250 PMID:22467853 IDA C Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 DAD1 protein taxon:9606 20200131 ARUK-UCL UniProtKB:P61803 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q01201 RELB part_of GO:0000785 PMID:23729669 IDA C Transcription factor RelB RELB protein taxon:9606 20200319 ARUK-UCL part_of(CL:0000084) UniProtKB:Q01201 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q02363 ID2 part_of GO:0000791 GO_REF:0000024 ISS UniProtKB:P41136 C DNA-binding protein inhibitor ID-2 ID2|BHLHB26 protein taxon:9606 20200516 ARUK-UCL UniProtKB:Q02363 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q04206 RELA part_of GO:0000785 PMID:21343296 IDA C Transcription factor p65 RELA|NFKB3 protein taxon:9606 20191029 ARUK-UCL UniProtKB:Q04206 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q04206 RELA part_of GO:0000785 PMID:23729669 IGI UniProtKB:P24001-1 C Transcription factor p65 RELA|NFKB3 protein taxon:9606 20200319 ARUK-UCL part_of(CL:0000084) UniProtKB:Q04206 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q15542 TAF5 part_of GO:0000785 PMID:24289924 IDA C Transcription initiation factor TFIID subunit 5 TAF5|TAF2D protein taxon:9606 20210107 ARUK-UCL coincident_with(SO:0001668),existence_overlaps(GO:0034644) UniProtKB:Q15542 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q16665 HIF1A part_of GO:0000785 PMID:19782034 IDA C Hypoxia-inducible factor 1-alpha HIF1A|BHLHE78|MOP1|PASD8 protein taxon:9606 20210107 ARUK-UCL UniProtKB:Q16665 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q5T7W0 ZNF618 part_of GO:0005721 PMID:27129234 IDA C Zinc finger protein 618 ZNF618|KIAA1952 protein taxon:9606 20200828 ARUK-UCL UniProtKB:Q5T7W0 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q7RTU1 TCF23 part_of GO:0000791 GO_REF:0000024 ISS UniProtKB:Q9JLR5 C Transcription factor 23 TCF23|BHLHA24 protein taxon:9606 20200516 ARUK-UCL UniProtKB:Q7RTU1 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q7Z6K1 THAP5 part_of GO:0000785 PMID:21110952 IDA C THAP domain-containing protein 5 THAP5 protein taxon:9606 20200612 ARUK-UCL UniProtKB:Q7Z6K1 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q86UZ6 ZBTB46 part_of GO:0000785 GO_REF:0000024 ISS UniProtKB:Q8BID6 C Zinc finger and BTB domain-containing protein 46 ZBTB46|BTBD4|ZNF340 protein taxon:9606 20210920 ARUK-UCL UniProtKB:Q86UZ6 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q86V15 CASZ1 part_of GO:0000785 PMID:27693370 IDA C Zinc finger protein castor homolog 1 CASZ1|CST|SRG|ZNF693 protein taxon:9606 20200826 ARUK-UCL UniProtKB:Q86V15 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB Q8N6L1 KRTCAP2 is_active_in GO:0008250 PMID:22467853 IDA C Keratinocyte-associated protein 2 KRTCAP2|KCP2 protein taxon:9606 20200131 ARUK-UCL UniProtKB:Q8N6L1 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q8NC56 LEMD2 part_of GO:0000785 PMID:28242692 IDA C LEM domain-containing protein 2 LEMD2 protein taxon:9606 20170912 ARUK-UCL existence_overlaps(GO:0000090) UniProtKB:Q8NC56 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB Q8TCJ2 STT3B is_active_in GO:0008250 PMID:22467853 IDA C Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B STT3B|SIMP protein taxon:9606 20200131 ARUK-UCL UniProtKB:Q8TCJ2 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q8WUX9 CHMP7 part_of GO:0000785 PMID:28242692 IDA C Charged multivesicular body protein 7 CHMP7 protein taxon:9606 20170912 ARUK-UCL existence_overlaps(GO:0000092) UniProtKB:Q8WUX9 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q92785 DPF2 part_of GO:0000785 PMID:28533407 IDA C Zinc finger protein ubi-d4 DPF2|BAF45D|REQ|UBID4 protein taxon:9606 20181201 ARUK-UCL UniProtKB:Q92785 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q92800 EZH1 part_of GO:0000792 PMID:19026781 ISS UniProtKB:P70351 C Histone-lysine N-methyltransferase EZH1 EZH1|KIAA0388 protein taxon:9606 20220104 ARUK-UCL UniProtKB:Q92800 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q92997 DVL3 part_of GO:0000785 PMID:21880741 IDA C Segment polarity protein dishevelled homolog DVL-3 DVL3|KIAA0208 protein taxon:9606 20210107 ARUK-UCL coincident_with(SO:0000167) UniProtKB:Q92997 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q96PU4 UHRF2 part_of GO:0005721 PMID:27129234 IDA C E3 ubiquitin-protein ligase UHRF2 UHRF2|NIRF|RNF107 protein taxon:9606 20200828 ARUK-UCL UniProtKB:Q96PU4 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q96SL8 FIZ1 part_of GO:0000785 GO_REF:0000024 ISS UniProtKB:A0A3Q1MB73 C Flt3-interacting zinc finger protein 1 FIZ1|ZNF798 protein taxon:9606 20200826 ARUK-UCL part_of(UBERON:0000966) UniProtKB:Q96SL8 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q9BT49 THAP7 part_of GO:0000785 PMID:15561719 IDA C THAP domain-containing protein 7 THAP7 protein taxon:9606 20220104 ARUK-UCL UniProtKB:Q9BT49 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB Q9HCE5 METTL14 is_active_in GO:0036396 PMID:29290617 IDA C N6-adenosine-methyltransferase non-catalytic subunit METTL14|KIAA1627 protein taxon:9606 20240206 ARUK-UCL UniProtKB:Q9HCE5 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q9NQV6 PRDM10 part_of GO:0000785 PMID:31143550 IDA C PR domain zinc finger protein 10 PRDM10|KIAA1231|PFM7|TRIS protein taxon:9606 20200124 ARUK-UCL UniProtKB:Q9NQV6 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q9ULV5 HSF4 part_of GO:0000785 PMID:8972228 IDA C Heat shock factor protein 4 HSF4 protein taxon:9606 20200507 ARUK-UCL UniProtKB:Q9ULV5 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB Q9Y2G2 CARD8 is_active_in GO:0140634 PMID:15030775 IDA C Caspase recruitment domain-containing protein 8 CARD8|DACAR|KIAA0955|NDPP1 protein taxon:9606 20240215 ARUK-UCL UniProtKB:Q9Y2G2 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q9Y2N7 HIF3A part_of GO:0000785 PMID:31768607 IDA C Hypoxia-inducible factor 3-alpha HIF3A|BHLHE17|MOP7|PASD7 protein taxon:9606 20200507 ARUK-UCL UniProtKB:Q9Y2N7 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q9Y462 ZNF711 part_of GO:0000785 PMID:32406922 ISS UniProtKB:P17010 C Zinc finger protein 711 ZNF711|CMPX1|ZNF6 protein taxon:9606 20210916 ARUK-UCL UniProtKB:Q9Y462 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB Q9XSK0 CRX part_of GO:0000785 PMID:18854042 IDA C Cone-rod homeobox protein CRX protein taxon:9913 20200826 ARUK-UCL part_of(UBERON:0000966) UniProtKB:Q9XSK0 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P38529 HSF1 part_of GO:0000785 PMID:8972228 IDA C Heat shock factor protein 1 HSF1 protein taxon:9031 20200507 ARUK-UCL UniProtKB:P38529 `
• WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: BFO:0000050 should be one of RO:0001025, RO:0002432, RO:0002325. Repaired to RO:0001025--`UniProtKB P38531 HSF3 part_of GO:0000785 PMID:8972228 IDA C Heat shock factor protein 3 HSF3 protein taxon:9031 20200507 ARUK-UCL UniProtKB:P38531 `