GORULE violations assigned by ARUK-UCL
Contents
gorule-0000001
GAF lines are parsed according to GAF 2.2 specifications
gorule-0000008
No annotations should be made to uninformative high level terms
gorule-0000020
Automatic repair of annotations to merged or obsoleted terms
gorule-0000022
Check for, and filter, annotations made to retracted publications
gorule-0000027
Each identifier in GAF is valid
gorule-0000046
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.
gorule-0000061
Allowed gene product to term relations (gp2term)
MESSAGES
gorule-0000001
GAF lines are parsed according to GAF 2.2 specifications
messages
- WARNING - Invalid subject type:defaulting to 'gene_product'--`RNAcentral URS0000812128_9606 URS0000812128_9606 acts_upstream_of GO:0051897 PMID:31574452 IMP P Homo sapiens (human) H19 imprinted maternally expressed transcript sRNA taxon:9606 20200821 ARUK-UCL occurs_in(CL:0000182) `
- WARNING - Invalid subject type:defaulting to 'gene_product'--`RNAcentral URS0000812128_9606 URS0000812128_9606 acts_upstream_of GO:1900017 PMID:31574452 IMP P Homo sapiens (human) H19 imprinted maternally expressed transcript sRNA taxon:9606 20200821 ARUK-UCL has_input(UniProtKB:P01579),occurs_in(CL:0000182)|has_input(UniProtKB:P05231),occurs_in(CL:0000182)|has_input(UniProtKB:Q14116),occurs_in(CL:0000182) `
- WARNING - Invalid subject type:defaulting to 'gene_product'--`RNAcentral URS0000812128_9606 URS0000812128_9606 acts_upstream_of GO:1903428 PMID:31574452 IMP P Homo sapiens (human) H19 imprinted maternally expressed transcript sRNA taxon:9606 20200821 ARUK-UCL occurs_in(CL:0000182) `
- WARNING - Invalid subject type:defaulting to 'gene_product'--`RNAcentral URS0000812128_9606 URS0000812128_9606 acts_upstream_of GO:1903945 PMID:31574452 IMP P Homo sapiens (human) H19 imprinted maternally expressed transcript sRNA taxon:9606 20200821 ARUK-UCL `
- WARNING - Invalid subject type:defaulting to 'gene_product'--`RNAcentral URS0000812128_9606 URS0000812128_9606 acts_upstream_of GO:2000378 PMID:31574452 IMP P Homo sapiens (human) H19 imprinted maternally expressed transcript sRNA taxon:9606 20230717 ARUK-UCL occurs_in(CL:0000182) `
- WARNING - Invalid subject type:defaulting to 'gene_product'--`RNAcentral URS0000812128_9606 URS0000812128_9606 acts_upstream_of GO:2001170 PMID:31574452 IMP P Homo sapiens (human) H19 imprinted maternally expressed transcript sRNA taxon:9606 20200821 ARUK-UCL occurs_in(CL:0000182) `
- WARNING - Invalid subject type:defaulting to 'gene_product'--`RNAcentral URS0000812128_9606 URS0000812128_9606 involved_in GO:0035196 PMID:31574452 IMP P Homo sapiens (human) H19 imprinted maternally expressed transcript sRNA taxon:9606 20200821 ARUK-UCL has_input(RNAcentral:URS00004E5112_9606),occurs_in(CL:0000182) `
- WARNING - Invalid subject type:defaulting to 'gene_product'--`RNAcentral URS0000812128_9606 URS0000812128_9606 involved_in GO:0098586 PMID:31574452 IMP P Homo sapiens (human) H19 imprinted maternally expressed transcript sRNA taxon:9606|taxon:10407 20200821 ARUK-UCL occurs_in(CL:0000182) `
gorule-0000008
No annotations should be made to uninformative high level terms
messages
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:97321 Ngf involved_in GO:0043388 PMID:10362258 IMP P Beta-nerve growth factor protein taxon:10090 20180124 ARUK-UCL has_input(UniProtKB:B2RWS6),has_input(UniProtKB:P38936),has_input(CHEBI:4705)|has_input(UniProtKB:O89090),has_input(UniProtKB:P38936),has_input(CHEBI:4705)|has_input(UniProtKB:O70494),has_input(UniProtKB:P38936),has_input(CHEBI:4705)
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:95629 Slc6a13 enables GO:0005368 PMID:22896705 IMP F Sodium- and chloride-dependent GABA transporter 2 protein taxon:10090 20200605 ARUK-UCL part_of(UBERON:0002107)
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`MGI MGI:1341865 Mark3 involved_in GO:0032092 PMID:9543386 ISS UniProtKB:P27448 P MAP/microtubule affinity-regulating kinase 3 protein taxon:10090 20180328 ARUK-UCL has_input(UniProtKB:P48967),has_input(UniProtKB:P63101)
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O00501 CLDN5 involved_in GO:0032092 PMID:25323998 IMP P Claudin-5 CLDN5|AWAL|TMVCF protein taxon:9606 20190702 ARUK-UCL occurs_in(CL:0002585),has_input(UniProtKB:O95832),has_input(UniProtKB:P57739)|occurs_in(CL:0002586),has_input(UniProtKB:O95832),has_input(UniProtKB:P57739) UniProtKB:O00501
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O43504 LAMTOR5 acts_upstream_of GO:1905636 PMID:21343296 IDA P Ragulator complex protein LAMTOR5 LAMTOR5|HBXIP|XIP protein taxon:9606 20191029 ARUK-UCL has_input(UniProtKB:Q04206) UniProtKB:O43504
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB O95816 BAG2 involved_in GO:0032091 PMID:16207813 IDA P BAG family molecular chaperone regulator 2 BAG2 protein taxon:9606 20180305 ARUK-UCL has_input(UniProtKB:Q9UNE7),has_input(UniProtKB:P62837),negatively_regulates(GO:0061630) UniProtKB:O95816
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P01138 NGF involved_in GO:0043388 PMID:10362258 ISS UniProtKB:P01139 P Beta-nerve growth factor NGF|NGFB protein taxon:9606 20180124 ARUK-UCL has_input(UniProtKB:Q09472),has_input(UniProtKB:P38936),has_input(CHEBI:4705)|has_input(UniProtKB:P08047),has_input(UniProtKB:P38936),has_input(CHEBI:4705)|has_input(UniProtKB:Q02447),has_input(UniProtKB:P38936),has_input(CHEBI:4705) UniProtKB:P01138
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P11137 MAP2 involved_in GO:1904527 GO_REF:0000024 ISS UniProtKB:P15146 P Microtubule-associated protein 2 MAP2 protein taxon:9606 20210816 ARUK-UCL has_input(UniProtKB:P33176) UniProtKB:P11137
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P13866 SLC5A1 located_in GO:0043229 GO_REF:0000024 ISS UniProtKB:P53790 C Sodium/glucose cotransporter 1 SLC5A1|NAGT|SGLT1 protein taxon:9606 20200323 ARUK-UCL part_of(CL:0000540),part_of(UBERON:0000955)|part_of(CL:2000044),part_of(UBERON:0000955) UniProtKB:P13866
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P16615 ATP2A2 involved_in GO:1900121 PMID:18068335 IMP P Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 ATP2A2|ATP2B protein taxon:9606 20191001 ARUK-UCL occurs_in(CL:0000233),part_of(GO:0006874) UniProtKB:P16615
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P24001 IL32 acts_upstream_of GO:1905636 PMID:23729669 IDA P Interleukin-32 IL32|NK4|TAIF protein taxon:9606 20211118 ARUK-UCL has_input(UniProtKB:Q04206) UniProtKB:P24001-1
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P27448 MARK3 involved_in GO:0032092 PMID:9543386 IDA P MAP/microtubule affinity-regulating kinase 3 MARK3|CTAK1|EMK2 protein taxon:9606 20180328 ARUK-UCL has_input(UniProtKB:P30307),has_input(UniProtKB:P63104) UniProtKB:P27448
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P31641 SLC6A6 enables GO:0005368 GO_REF:0000024 ISS UniProtKB:P31643 F Sodium- and chloride-dependent taurine transporter SLC6A6 protein taxon:9606 20200602 ARUK-UCL has_target_start_location(GO:0009897),has_target_end_location(GO:0009898) UniProtKB:P31641
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P31641 SLC6A6 enables GO:0005368 PMID:19074966 IDA F Sodium- and chloride-dependent taurine transporter SLC6A6 protein taxon:9606 20200603 ARUK-UCL has_target_start_location(GO:0009897),has_target_end_location(GO:0009898) UniProtKB:P31641
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P31641 SLC6A6 enables GO:0005368 PMID:23519128 IMP F Sodium- and chloride-dependent taurine transporter SLC6A6 protein taxon:9606 20200602 ARUK-UCL occurs_in(CL:0000523),has_target_start_location(GO:0009897),has_target_end_location(GO:0009898) UniProtKB:P31641
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P31749 AKT1 involved_in GO:0032091 PMID:18292230 IMP P RAC-alpha serine/threonine-protein kinase AKT1|PKB|RAC protein taxon:9606 20180201 ARUK-UCL has_input(UniProtKB:Q9UNE7),has_input(UniProtKB:P10636) UniProtKB:P31749
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P51451 BLK involved_in GO:0032092 PMID:23555801 IMP P Tyrosine-protein kinase Blk BLK protein taxon:9606 20210420 ARUK-UCL has_input(UniProtKB:P16885),has_input(UniProtKB:Q8NDB2),part_of(GO:0050853) UniProtKB:P51451
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P62714 PPP2CB involved_in GO:1904528 GO_REF:0000024 ISS UniProtKB:P62716 P Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform PPP2CB protein taxon:9606 20171208 ARUK-UCL has_input(UniProtKB:P46821) UniProtKB:P62714
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB P67775 PPP2CA involved_in GO:1904528 GO_REF:0000024 ISS UniProtKB:P63331 P Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform PPP2CA protein taxon:9606 20171208 ARUK-UCL has_input(UniProtKB:P46821)|has_input(UniProtKB:P11137) UniProtKB:P67775
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q07954 LRP1 involved_in GO:0032092 PMID:23386614 IGI UniProtKB:P04925 P Prolow-density lipoprotein receptor-related protein 1 LRP1|A2MR|APR protein taxon:9606 20170626 ARUK-UCL has_input(ComplexPortal:CPX-1134),has_input(UniProtKB:P04925) UniProtKB:Q07954
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q13526 PIN1 involved_in GO:0032092 PMID:24964035 IDA P Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 PIN1 protein taxon:9606 20180516 ARUK-UCL has_input(UniProtKB:Q15796),has_input(UniProtKB:P10636) UniProtKB:Q13526
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q5T7W0 ZNF618 involved_in GO:0035563 PMID:27129234 IDA P Zinc finger protein 618 ZNF618|KIAA1952 protein taxon:9606 20200828 ARUK-UCL UniProtKB:Q5T7W0
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q6IQ55 TTBK2 involved_in GO:1904527 PMID:26323690 IDA P Tau-tubulin kinase 2 TTBK2|KIAA0847 protein taxon:9606 20171106 ARUK-UCL has_input(UniProtKB:O00139) UniProtKB:Q6IQ55
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q7KZI7 MARK2 involved_in GO:1904526 PMID:24251416 ISS UniProtKB:O08679 P Serine/threonine-protein kinase MARK2 MARK2|EMK1 protein taxon:9606 20180515 ARUK-UCL has_input(UniProtKB:P10636) UniProtKB:Q7KZI7
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q7Z2H8 SLC36A1 enables GO:0005368 PMID:19074966 IDA F Proton-coupled amino acid transporter 1 SLC36A1|PAT1 protein taxon:9606 20200603 ARUK-UCL has_target_start_location(GO:0009897),has_target_end_location(GO:0009898) UniProtKB:Q7Z2H8
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q93084 ATP2A3 involved_in GO:1900121 PMID:18068335 IMP P Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 ATP2A3 protein taxon:9606 20191001 ARUK-UCL occurs_in(CL:0000233),part_of(GO:0006874) UniProtKB:Q93084
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9NSD5 SLC6A13 enables GO:0005368 GO_REF:0000024 ISS UniProtKB:P31646 F Sodium- and chloride-dependent GABA transporter 2 SLC6A13|GAT2 protein taxon:9606 20200608 ARUK-UCL part_of(CL:0000182),has_target_start_location(GO:0009897),has_target_end_location(GO:0009898) UniProtKB:Q9NSD5
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`UniProtKB Q9NSD5 SLC6A13 enables GO:0005368 GO_REF:0000024 ISS UniProtKB:P31649 F Sodium- and chloride-dependent GABA transporter 2 SLC6A13|GAT2 protein taxon:9606 20200605 ARUK-UCL part_of(UBERON:0002107) UniProtKB:Q9NSD5
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`ComplexPortal CPX-1120 abeta-40-42-oligomer_human involved_in GO:0032092 PMID:29518356 IDA P Amyloid-beta protein 40/42 oligomeric complex fibrillar amyloid-beta oligomer|Annular protofibril complex|Amyloid-beta fibrils|beta-amyloid protein 40/42 heterooligomer|beta-amyloid protein 40/42 complex|beta-amyloid-40/42 complex|beta amyloid protein 40/42 complex|amyloid-beta-40/42 complex|amyloid beta protein 40/42 complex|amyloid-beta protein 40/42 heterooligomer|amyloid-beta-40/42 heterooligomer|amyloid beta protein 40/42 heterooligomer|beta-amyloid-40/42 heterooligomer|beta amyloid protein 40/42 heterooligomer|Abeta protein 40/42 complex|APP oligomer|Type 1 amyloid-beta oligomer|ADDL complex|pre-fibrillar amyloid-beta oligomer|prefibrillar amyloid-beta oligomer|Type 2 amyloid-beta oligomer protein_complex taxon:9606 20181212 ARUK-UCL occurs_in(CL:0000129),has_input(UniProtKB:O43914),has_input(UniProtKB:Q9NZC2)
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`ComplexPortal CPX-1134 abeta-42-oligomer_human involved_in GO:0032092 PMID:24658113 IDA P Amyloid-beta protein 42 oligomeric complex pre-fibrillar amyloid-beta oligomer|prefibrillar amyloid-beta oligomer|Type 2 amyloid-beta oligomer|fibrillar amyloid-beta oligomer|Annular protofibril complex|Amyloid-beta fibrils|beta-amyloid protein 42 heterooligomer|beta-amyloid protein 42 complex|beta-amyloid-42 complex|beta amyloid protein 42 complex|amyloid-beta-42 complex|amyloid beta protein 42 complex|amyloid-beta protein 42 heterooligomer|amyloid-beta-42 heterooligomer|amyloid beta protein 42 heterooligomer|beta-amyloid-42 heterooligomer|beta amyloid protein 42 heterooligomer|Abeta protein 42 complex|APP oligomer|Type 1 amyloid-beta oligomer|ADDL complex protein_complex taxon:9606 20170627 ARUK-UCL occurs_in(CL:0002608),has_input(UniProtKB:P54764),has_input(UniProtKB:P00519)
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`ComplexPortal CPX-1134 abeta-42-oligomer_human involved_in GO:0044092 PMID:23386614 IDA P Amyloid-beta protein 42 oligomeric complex pre-fibrillar amyloid-beta oligomer|prefibrillar amyloid-beta oligomer|Type 2 amyloid-beta oligomer|fibrillar amyloid-beta oligomer|Annular protofibril complex|Amyloid-beta fibrils|beta-amyloid protein 42 heterooligomer|beta-amyloid protein 42 complex|beta-amyloid-42 complex|beta amyloid protein 42 complex|amyloid-beta-42 complex|amyloid beta protein 42 complex|amyloid-beta protein 42 heterooligomer|amyloid-beta-42 heterooligomer|amyloid beta protein 42 heterooligomer|beta-amyloid-42 heterooligomer|beta amyloid protein 42 heterooligomer|Abeta protein 42 complex|APP oligomer|Type 1 amyloid-beta oligomer|ADDL complex protein_complex taxon:9606 20170626 ARUK-UCL has_input(UniProtKB:P04156),positively_regulates(GO:0034205)
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`RNAcentral URS00003B95DA_9606 URS00003B95DA_9606 involved_in GO:1900131 PMID:24608080 IDA P Homo sapiens (human) hsa-miR-27a-3p miRNA taxon:9606 20190116 ARUK-UCL occurs_in(CL:0000517)
`
- WARNING - Violates GO Rule:GORULE:0000008: No annotations should be made to uninformatively high level terms--`RNAcentral URS000059311D_9606 URS000059311D_9606 involved_in GO:1900131 PMID:24608080 IDA P Homo sapiens (human) hsa-miR-27b-3p miRNA taxon:9606 20190116 ARUK-UCL occurs_in(CL:0000517)
`
gorule-0000020
Automatic repair of annotations to merged or obsoleted terms
messages
- ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:107656 Ifng involved_in GO:0007259 PMID:26227742 IGI UniProtKB:Q62120 P Interferon gamma protein taxon:10090 20201016 ARUK-UCL occurs_in(CL:0000129),part_of(GO:0032760)|occurs_in(CL:0000129),part_of(GO:0045348)|occurs_in(CL:0000129),part_of(GO:0032731)|occurs_in(CL:0000129),part_of(GO:0051770)
`
- ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`MGI MGI:96629 Jak2 involved_in GO:0007259 PMID:26227742 IGI UniProtKB:P01580 P Tyrosine-protein kinase JAK2 protein taxon:10090 20201016 ARUK-UCL occurs_in(CL:0000129),part_of(GO:0032760)|occurs_in(CL:0000129),part_of(GO:0045348)|occurs_in(CL:0000129),part_of(GO:0032731)|occurs_in(CL:0000129),part_of(GO:0051770)
`
- ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB O60674 JAK2 involved_in GO:0007259 GO_REF:0000024 ISS UniProtKB:Q62120 P Tyrosine-protein kinase JAK2 JAK2 protein taxon:9606 20201016 ARUK-UCL occurs_in(CL:0000129),part_of(GO:0032760)|occurs_in(CL:0000129),part_of(GO:0045348)|occurs_in(CL:0000129),part_of(GO:0032731)|occurs_in(CL:0000129),part_of(GO:0051770) UniProtKB:O60674
`
- ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`UniProtKB P01579 IFNG involved_in GO:0007259 GO_REF:0000024 ISS UniProtKB:P01580 P Interferon gamma IFNG protein taxon:9606 20201016 ARUK-UCL occurs_in(CL:0000129),part_of(GO:0032760)|occurs_in(CL:0000129),part_of(GO:0045348)|occurs_in(CL:0000129),part_of(GO:0032731)|occurs_in(CL:0000129),part_of(GO:0051770) UniProtKB:P01579
`
- ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`RNAcentral URS000075D95B_9606 URS000075D95B_9606 enables GO:0140463 PMID:32482714 TAS F Homo sapiens (human) X inactive specific transcript (XIST) lncRNA taxon:9606 20230815 ARUK-UCL part_of(GO:0060820)
`
- ERROR - Obsolete class with no replacement:Violates GORULE:0000020--`RNAcentral URS0000DB8B87_9606 URS0000DB8B87_9606 enables GO:0140463 PMID:31048766 TAS F Homo sapiens (human) X inactive specific transcript lncRNA taxon:9606 20230530 ARUK-UCL part_of(GO:0060820)|part_of(GO:0051303)
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P14921 ETS1 enables GO:0030374 PMID:31146003 IMP F Protein C-ets-1 ETS1|EWSR2 protein taxon:9606 20201215 ARUK-UCL has_input(UniProtKB:P22736) UniProtKB:P14921
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P19419 ELK1 enables GO:0030374 PMID:31146003 IMP F ETS domain-containing protein Elk-1 ELK1 protein taxon:9606 20201215 ARUK-UCL has_input(UniProtKB:P22736) UniProtKB:P19419
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P82094 TMF1 enables GO:0030374 PMID:10428808 IDA F TATA element modulatory factor TMF1|ARA160 protein taxon:9606 20200605 ARUK-UCL has_input(UniProtKB:P10275),part_of(GO:0030521) UniProtKB:P82094
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q96PN7 TRERF1 enables GO:0030374 PMID:17015480 IDA F Transcriptional-regulating factor 1 TRERF1|BCAR2|RAPA|TREP132 protein taxon:9606 20200604 ARUK-UCL has_input(UniProtKB:P06401) UniProtKB:Q96PN7
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q96PN7 TRERF1 enables GO:0033142 PMID:17015480 IPI UniProtKB:P06401 F Transcriptional-regulating factor 1 TRERF1|BCAR2|RAPA|TREP132 protein taxon:9606 20200604 ARUK-UCL part_of(GO:0030374),part_of(GO:0045944) UniProtKB:Q96PN7
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB Q9H0E9 BRD8 enables GO:0030374 PMID:9368056 IDA F Bromodomain-containing protein 8 BRD8|SMAP|SMAP2 protein taxon:9606 20200610 ARUK-UCL UniProtKB:Q9H0E9
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RNAcentral URS000049A7EB_9606 URS000049A7EB_9606 acts_upstream_of GO:0031327 PMID:29048659 IDA P Homo sapiens (human) hsa-miR-520c-3p miRNA taxon:9606 20200130 ARUK-UCL has_input(UniProtKB:P08670)
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RNAcentral URS00004AE8D3_9606 URS00004AE8D3_9606 acts_upstream_of_or_within GO:0031327 PMID:30210926 IDA P Homo sapiens (human) hsa-miR-506-3p miRNA taxon:9606 20200312 ARUK-UCL has_input(UniProtKB:P46013)
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`RNAcentral URS00004AE8D3_9606 URS00004AE8D3_9606 involved_in GO:0031327 PMID:30210926 IDA P Homo sapiens (human) hsa-miR-506-3p miRNA taxon:9606 20200312 ARUK-UCL has_input(UniProtKB:P08670)
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P10145 CXCL8 acts_upstream_of_or_within GO:0031328 PMID:29048659 IDA P Interleukin-8 CXCL8|IL8 protein taxon:9606 20200526 ARUK-UCL has_input(UniProtKB:P02751) UniProtKB:P10145
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P10145 CXCL8 acts_upstream_of_or_within GO:0031328 PMID:29048659 IDA P Interleukin-8 CXCL8|IL8 protein taxon:9606 20200526 ARUK-UCL has_input(UniProtKB:P08670) UniProtKB:P10145
`
- WARNING - Obsolete class:Violates GORULE:0000020, but was repaired--`UniProtKB P05549 TFAP2A enables GO:0140536 PMID:31146003 IMP F Transcription factor AP-2-alpha TFAP2A|AP2TF|TFAP2 protein taxon:9606 20201215 ARUK-UCL has_input(UniProtKB:P22736) UniProtKB:P05549
`
gorule-0000022
Check for, and filter, annotations made to retracted publications
messages
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`UniProtKB P05067 APP involved_in GO:0007613 PMID:16541076 IGI ComplexPortal:CPX-1134 P Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20170626 ARUK-UCL UniProtKB:P05067-PRO_0000000092
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`UniProtKB P05067 APP located_in GO:0005615 PMID:16541076 IDA C Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20170626 ARUK-UCL UniProtKB:P05067-PRO_0000000092
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`UniProtKB P05067 APP located_in GO:0016020 PMID:16541076 IDA C Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20170208 ARUK-UCL UniProtKB:P05067-PRO_0000000094
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`UniProtKB P05067 APP located_in GO:0016020 PMID:16541076 IDA C Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20170208 ARUK-UCL UniProtKB:P05067-PRO_0000384574
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`UniProtKB P05231 IL6 involved_in GO:0045669 PMID:30545407 IDA P Interleukin-6 IL6|IFNB2 protein taxon:9606 20230418 ARUK-UCL UniProtKB:P05231
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`ComplexPortal CPX-1134 abeta-42-oligomer_human involved_in GO:0007613 PMID:16541076 IGI UniProtKB:P05067-PRO_0000000092 P Amyloid-beta protein 42 oligomeric complex pre-fibrillar amyloid-beta oligomer|prefibrillar amyloid-beta oligomer|Type 2 amyloid-beta oligomer|fibrillar amyloid-beta oligomer|Annular protofibril complex|Amyloid-beta fibrils|beta-amyloid protein 42 heterooligomer|beta-amyloid protein 42 complex|beta-amyloid-42 complex|beta amyloid protein 42 complex|amyloid-beta-42 complex|amyloid beta protein 42 complex|amyloid-beta protein 42 heterooligomer|amyloid-beta-42 heterooligomer|amyloid beta protein 42 heterooligomer|beta-amyloid-42 heterooligomer|beta amyloid protein 42 heterooligomer|Abeta protein 42 complex|APP oligomer|Type 1 amyloid-beta oligomer|ADDL complex protein_complex taxon:9606 20170626 ARUK-UCL
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`ComplexPortal CPX-1134 abeta-42-oligomer_human located_in GO:0005615 PMID:16541076 IDA C Amyloid-beta protein 42 oligomeric complex pre-fibrillar amyloid-beta oligomer|prefibrillar amyloid-beta oligomer|Type 2 amyloid-beta oligomer|fibrillar amyloid-beta oligomer|Annular protofibril complex|Amyloid-beta fibrils|beta-amyloid protein 42 heterooligomer|beta-amyloid protein 42 complex|beta-amyloid-42 complex|beta amyloid protein 42 complex|amyloid-beta-42 complex|amyloid beta protein 42 complex|amyloid-beta protein 42 heterooligomer|amyloid-beta-42 heterooligomer|amyloid beta protein 42 heterooligomer|beta-amyloid-42 heterooligomer|beta amyloid protein 42 heterooligomer|Abeta protein 42 complex|APP oligomer|Type 1 amyloid-beta oligomer|ADDL complex protein_complex taxon:9606 20170626 ARUK-UCL
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`ComplexPortal CPX-1134 abeta-42-oligomer_human located_in GO:0005737 PMID:16541076 IDA C Amyloid-beta protein 42 oligomeric complex pre-fibrillar amyloid-beta oligomer|prefibrillar amyloid-beta oligomer|Type 2 amyloid-beta oligomer|fibrillar amyloid-beta oligomer|Annular protofibril complex|Amyloid-beta fibrils|beta-amyloid protein 42 heterooligomer|beta-amyloid protein 42 complex|beta-amyloid-42 complex|beta amyloid protein 42 complex|amyloid-beta-42 complex|amyloid beta protein 42 complex|amyloid-beta protein 42 heterooligomer|amyloid-beta-42 heterooligomer|amyloid beta protein 42 heterooligomer|beta-amyloid-42 heterooligomer|beta amyloid protein 42 heterooligomer|Abeta protein 42 complex|APP oligomer|Type 1 amyloid-beta oligomer|ADDL complex protein_complex taxon:9606 20181214 ARUK-UCL
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`RNAcentral URS00002C0FCB_9606 URS00002C0FCB_9606 enables GO:0003730 PMID:27364335 IDA F Homo sapiens (human) hsa-miR-130b-3p miRNA taxon:9606 20200821 ARUK-UCL has_input(UniProtKB:P37231),part_of(GO:0035195)
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`RNAcentral URS00002C0FCB_9606 URS00002C0FCB_9606 enables GO:1903231 PMID:27364335 IDA F Homo sapiens (human) hsa-miR-130b-3p miRNA taxon:9606 20200821 ARUK-UCL has_input(UniProtKB:P37231)
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`RNAcentral URS00002C0FCB_9606 URS00002C0FCB_9606 involved_in GO:0035195 PMID:27364335 IDA P Homo sapiens (human) hsa-miR-130b-3p miRNA taxon:9606 20200821 ARUK-UCL has_input(UniProtKB:P37231)
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`RNAcentral URS0000355E82_9606 URS0000355E82_9606 acts_upstream_of GO:0045668 PMID:30545407 IMP P Homo sapiens (human) hsa-miR-665 miRNA taxon:9606 20230418 ARUK-UCL
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`RNAcentral URS0000355E82_9606 URS0000355E82_9606 enables GO:0106222 PMID:30545407 IDA F Homo sapiens (human) hsa-miR-665 miRNA taxon:9606 20230418 ARUK-UCL has_input(RNAcentral:URS0000EF3C68_9606),occurs_in(CL:0002570)
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`RNAcentral URS0000355E82_9606 URS0000355E82_9606 enables GO:1903231 PMID:30545407 IDA F Homo sapiens (human) hsa-miR-665 miRNA taxon:9606 20230418 ARUK-UCL has_input(UniProtKB:P05231),occurs_in(CL:0002570)
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`RNAcentral URS0000355E82_9606 URS0000355E82_9606 involved_in GO:0031047 PMID:30545407 IDA P Homo sapiens (human) hsa-miR-665 miRNA taxon:9606 20230418 ARUK-UCL has_input(RNAcentral:URS0000EF3C68_9606),occurs_in(CL:0002570)
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`RNAcentral URS0000355E82_9606 URS0000355E82_9606 involved_in GO:0035195 PMID:30545407 IDA P Homo sapiens (human) hsa-miR-665 miRNA taxon:9606 20230418 ARUK-UCL has_input(UniProtKB:P05231),occurs_in(CL:0002570),causally_upstream_of(GO:0045668)
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`RNAcentral URS000075BB37_9606 URS000075BB37_9606 acts_upstream_of GO:0045669 PMID:30545407 IDA P Homo sapiens (human) HIF1A antisense RNA 2 (HIF1A-AS2) lncRNA taxon:9606 20230418 ARUK-UCL
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`RNAcentral URS000075BB37_9606 URS000075BB37_9606 enables GO:0035198 PMID:30545407 IDA F Homo sapiens (human) HIF1A antisense RNA 2 (HIF1A-AS2) lncRNA taxon:9606 20230418 ARUK-UCL has_input(RNAcentral:URS0000355E82_9606)
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`RNAcentral URS000075BB37_9606 URS000075BB37_9606 enables GO:0140869 PMID:30545407 IDA F Homo sapiens (human) HIF1A antisense RNA 2 (HIF1A-AS2) lncRNA taxon:9606 20230418 ARUK-UCL has_input(RNAcentral:URS0000355E82_9606)
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`RNAcentral URS000075BB37_9606 URS000075BB37_9606 involved_in GO:0000512 PMID:30545407 IDA P Homo sapiens (human) HIF1A antisense RNA 2 (HIF1A-AS2) lncRNA taxon:9606 20230418 ARUK-UCL has_input(RNAcentral:URS0000355E82_9606)
`
- ERROR - Violates GO Rule:GORULE:0000022: Check for, and filter, annotations made to retracted publications--`RNAcentral URS000075BB37_9606 URS000075BB37_9606 involved_in GO:2000627 PMID:30545407 IDA P Homo sapiens (human) HIF1A antisense RNA 2 (HIF1A-AS2) lncRNA taxon:9606 20230522 ARUK-UCL has_input(RNAcentral:URS0000355E82_9606)
`
gorule-0000027
Each identifier in GAF is valid
messages
- WARNING - Invalid identifier:GORULE:0000027: 107363 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:107363 Stxbp1 located_in GO:0098888 PMID:18703708 IDA C Syntaxin-binding protein 1 protein taxon:10090 20240924 ARUK-UCL part_of(CL:0010012),part_of(GO:0030424)
`
- WARNING - Invalid identifier:GORULE:0000027: 107558 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:107558 Sema3a involved_in GO:0150020 PMID:22683681 IGI UniProtKB:P97333 P Semaphorin-3A protein taxon:10090 20180207 ARUK-UCL occurs_in(CL:0010012),occurs_in(UBERON:0005394)
`
- WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 enables GO:0019828 PMID:27179792 IMP F Myc box-dependent-interacting protein 1 protein taxon:10090 20190717 ARUK-UCL has_input(UniProtKB:P56818),occurs_in(CL:0010012),part_of(GO:1902430)
`
- WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 involved_in GO:0030838 PMID:24836577 IDA P Myc box-dependent-interacting protein 1 protein taxon:10090 20211119 ARUK-UCL occurs_in(CL:0000746),part_of(GO:0033292)
`
- WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 involved_in GO:0033292 PMID:24836577 IMP P Myc box-dependent-interacting protein 1 protein taxon:10090 20180510 ARUK-UCL occurs_in(CL:0000746)
`
- WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 involved_in GO:0086091 PMID:24836577 IMP P Myc box-dependent-interacting protein 1 protein taxon:10090 20211119 ARUK-UCL occurs_in(CL:0000746)
`
- WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 involved_in GO:1901380 PMID:24836577 IMP P Myc box-dependent-interacting protein 1 protein taxon:10090 20211119 ARUK-UCL occurs_in(CL:0000746),part_of(GO:1903946)
`
- WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 involved_in GO:1902430 PMID:27179792 IMP P Myc box-dependent-interacting protein 1 protein taxon:10090 20190717 ARUK-UCL occurs_in(CL:0010012),has_output(UniProtKB:P12023-PRO_0000000116)|occurs_in(CL:0010012),has_output(UniProtKB:P12023-PRO_0000000118)|occurs_in(CL:0010012),has_output(UniProtKB:P12023-PRO_0000000119)
`
- WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 involved_in GO:1902960 PMID:27179792 IMP P Myc box-dependent-interacting protein 1 protein taxon:10090 20190717 ARUK-UCL occurs_in(CL:0010012),has_output(UniProtKB:P12023-PRO_0000000119),has_input(UniProtKB:P56818)|occurs_in(CL:0010012),has_output(UniProtKB:P12023-PRO_0000000118),has_input(UniProtKB:P56818)|occurs_in(CL:0010012),has_output(UniProtKB:P12023-PRO_0000000116),has_input(UniProtKB:P56818)
`
- WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 involved_in GO:1903946 PMID:24836577 IMP P Myc box-dependent-interacting protein 1 protein taxon:10090 20211119 ARUK-UCL occurs_in(CL:0000746)
`
- WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 involved_in GO:1904878 PMID:24836577 IMP P Myc box-dependent-interacting protein 1 protein taxon:10090 20211119 ARUK-UCL occurs_in(CL:0000746)
`
- WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 located_in GO:0030315 PMID:24836577 IDA C Myc box-dependent-interacting protein 1 protein taxon:10090 20180510 ARUK-UCL part_of(CL:0000746)
`
- WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 located_in GO:0030424 PMID:32552912 IDA C Myc box-dependent-interacting protein 1 protein taxon:10090 20201110 ARUK-UCL part_of(CL:0000530)
`
- WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 located_in GO:0030425 PMID:32552912 IDA C Myc box-dependent-interacting protein 1 protein taxon:10090 20201110 ARUK-UCL part_of(CL:0000530)
`
- WARNING - Invalid identifier:GORULE:0000027: 108092 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:108092 Bin1 located_in GO:0031982 PMID:32552912 IDA C Myc box-dependent-interacting protein 1 protein taxon:10090 20201110 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 1097161 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:1097161 Bak1 enables GO:0042802 PMID:10950869 IPI UniProtKB:O08734 F Bcl-2 homologous antagonist/killer protein taxon:10090 20190717 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 1097161 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:1097161 Bak1 part_of GO:0097145 PMID:10950869 IDA C Bcl-2 homologous antagonist/killer protein taxon:10090 20190717 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 1276116 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:1276116 Ep300 involved_in GO:0001966 PMID:19822209 IMP P Histone acetyltransferase p300 protein taxon:10090 20181126 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 1276116 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:1276116 Ep300 involved_in GO:0002209 PMID:19822209 IMP P Histone acetyltransferase p300 protein taxon:10090 20181126 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 1276116 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:1276116 Ep300 involved_in GO:0007611 PMID:19822209 IMP P Histone acetyltransferase p300 protein taxon:10090 20181126 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 1276116 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:1276116 Ep300 involved_in GO:0035264 PMID:19822209 IMP P Histone acetyltransferase p300 protein taxon:10090 20181126 ARUK-UCL happens_during(UBERON:0000092)
`
- WARNING - Invalid identifier:GORULE:0000027: 1276116 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:1276116 Ep300 involved_in GO:0036268 PMID:19822209 IMP P Histone acetyltransferase p300 protein taxon:10090 20181126 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 1276116 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:1276116 Ep300 involved_in GO:0060325 PMID:19822209 IMP P Histone acetyltransferase p300 protein taxon:10090 20181126 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 2140230 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:2140230 Camta1 involved_in GO:0045944 PMID:25049392 IDA P Calmodulin-binding transcription activator 1 protein taxon:10090 20200611 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 2180852 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:2180852 Oas2 involved_in GO:0070106 PMID:32270034 IEP P 2'-5'-oligoadenylate synthase 2 protein taxon:10090 20210205 ARUK-UCL occurs_in(CL:0000312)
`
- WARNING - Invalid identifier:GORULE:0000027: 2448528 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:2448528 Prdm13 enables GO:0061629 PMID:23639443 IDA F PR domain zinc finger protein 13 protein taxon:10090 20200124 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 2448528 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:2448528 Prdm13 enables GO:0061629 PMID:23639443 IPI UniProtKB:Q02067 F PR domain zinc finger protein 13 protein taxon:10090 20200124 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 2685844 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:2685844 Prdm12 involved_in GO:0000122 PMID:26443638 IDA P PR domain zinc finger protein 12 protein taxon:10090 20200124 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 3605073 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:3605073 Slc28a1 located_in GO:0031526 PMID:22492015 IDA C Sodium/nucleoside cotransporter 1 protein taxon:10090 20211118 ARUK-UCL part_of(CL:0000584)|part_of(CL:0002307)
`
- WARNING - Invalid identifier:GORULE:0000027: 3828086 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:3828086 Zbed6 enables GO:0000976 PMID:20016685 IDA F Zinc finger BED domain-containing protein 6 protein taxon:10090 20210920 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 3828086 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:3828086 Zbed6 enables GO:0001227 PMID:20016685 IDA F Zinc finger BED domain-containing protein 6 protein taxon:10090 20210920 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 3828086 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:3828086 Zbed6 involved_in GO:0000122 PMID:20016685 IDA P Zinc finger BED domain-containing protein 6 protein taxon:10090 20210920 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 88026 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:88026 Ank3 located_in GO:0033268 PMID:28426968 IDA C Ankyrin-3 protein taxon:10090 20180316 ARUK-UCL part_of(CL:1001451)
`
- WARNING - Invalid identifier:GORULE:0000027: 95794 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:95794 Lrp2 involved_in GO:0015031 PMID:17324488 IDA P Low-density lipoprotein receptor-related protein 2 protein taxon:10090 20191121 ARUK-UCL occurs_in(CL:0000706),has_input(UniProtKB:P41160)
`
- WARNING - Invalid identifier:GORULE:0000027: 95794 does not match any id_syntax patterns for MGI in dbxrefs--`MGI MGI:95794 Lrp2 involved_in GO:0044321 PMID:17324488 IDA P Low-density lipoprotein receptor-related protein 2 protein taxon:10090 20191121 ARUK-UCL occurs_in(CL:0000706)
`
- WARNING - Invalid identifier:GORULE:0000027: 12793031 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304817 Atg7 involved_in GO:0061684 PMID:23434281|RGD:12793031 IMP P autophagy related 7 gene taxon:10116 20181011 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 13514081 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303075 Hsp90ab1 enables GO:0044183 PMID:17517623|RGD:13514081 IMP F heat shock protein 90 alpha family class B member 1 gene taxon:10116 20240320 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 13514081 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303075 Hsp90ab1 involved_in GO:0061077 PMID:17517623|RGD:13514081 IMP P heat shock protein 90 alpha family class B member 1 gene taxon:10116 20240320 ARUK-UCL has_input(UniProtKB:P61810),occurs_in(CL:0010012)
`
- WARNING - Invalid identifier:GORULE:0000027: 13514081 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303075 Hsp90ab1 is_active_in GO:0101031 PMID:17517623|RGD:13514081 IMP C heat shock protein 90 alpha family class B member 1 gene taxon:10116 20240320 ARUK-UCL
`
- WARNING - Invalid identifier:GORULE:0000027: 13514081 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303075 Hsp90ab1 involved_in GO:1901799 PMID:17517623|RGD:13514081 IMP P heat shock protein 90 alpha family class B member 1 gene taxon:10116 20180226 ARUK-UCL has_input(UniProtKB:P61810-PRO_0000004798),occurs_in(CL:0010012),regulates(GO:0097472)|has_input(UniProtKB:P19332),occurs_in(CL:0010012)
`
- WARNING - Invalid identifier:GORULE:0000027: 13514087 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1303035 Kif5a involved_in GO:1990049 PMID:28426968|RGD:13514087 IGI UniProtKB:Q2PQA9 P kinesin family member 5A gene taxon:10116 20180327 ARUK-UCL occurs_in(CL:1001451)
`
- WARNING - Invalid identifier:GORULE:0000027: 13514087 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304682 Sptbn4 located_in GO:0043194 PMID:28426968|RGD:13514087 IDA C spectrin, beta, non-erythrocytic 4 gene taxon:10116 20180316 ARUK-UCL part_of(CL:0002608)
`
- WARNING - Invalid identifier:GORULE:0000027: 13514087 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304996 Kif1a involved_in GO:1990048 PMID:28426968|RGD:13514087 IGI UniProtKB:O35787,UniProtKB:O88658 P kinesin family member 1A gene taxon:10116 20180327 ARUK-UCL occurs_in(CL:1001451)
`
- WARNING - Invalid identifier:GORULE:0000027: 13514087 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304996 Kif1a involved_in GO:1990049 PMID:28426968|RGD:13514087 IGI UniProtKB:O35787,UniProtKB:O88658 P kinesin family member 1A gene taxon:10116 20180327 ARUK-UCL occurs_in(CL:1001451)
`
- WARNING - Invalid identifier:GORULE:0000027: 14397558 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305771 Casp8ap2 located_in GO:0005634 PMID:19721136|RGD:14397558 IDA C caspase 8 associated protein 2 gene taxon:10116 20190312 ARUK-UCL part_of(CL:0000134)
`
- WARNING - Invalid identifier:GORULE:0000027: 14397558 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1305771 Casp8ap2 located_in GO:0005737 PMID:19721136|RGD:14397558 IDA C caspase 8 associated protein 2 gene taxon:10116 20190312 ARUK-UCL part_of(CL:0000134),existence_overlaps(GO:0006979)
`
- WARNING - Invalid identifier:GORULE:0000027: 39458028 does not match any id_syntax patterns for RGD in dbxrefs--`RGD 1304680 Epha1 involved_in GO:0045766 PMID:18308734|RGD:39458028 IMP P Eph receptor A1 gene taxon:10116 20200930 ARUK-UCL
`
gorule-0000046
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.
messages
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:1196458 Scarb2 enables GO:0042803 PMID:29199275 IPI UniProtKB:O35114 F Lysosome membrane protein 2 protein taxon:10090 20181031 ARUK-UCL
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:97275 Myod1 enables GO:0042803 PMID:10652346 IPI UniProtKB:P10085 F Myoblast determination protein 1 protein taxon:10090 20230314 ARUK-UCL
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`MGI MGI:894311 Lilrb3 enables GO:0042803 PMID:24052308 IPI UniProtKB:P97484 F Leukocyte immunoglobulin-like receptor subfamily B member 3 protein taxon:10090 20230314 ARUK-UCL causally_upstream_of(GO:0001540)
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP enables GO:0042803 PMID:15447668 IPI UniProtKB:P05067-PRO_0000000092 F Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000092
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP enables GO:0042803 PMID:15447668 IPI UniProtKB:P05067-PRO_0000000093 F Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000093
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP enables GO:0042803 PMID:18568035 IPI UniProtKB:P05067-PRO_0000000092 F Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20170213 ARUK-UCL UniProtKB:P05067-PRO_0000000092
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP enables GO:0042803 PMID:22179788 IPI UniProtKB:P05067-PRO_0000000093 F Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000093
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP enables GO:0042803 PMID:23386614 IPI UniProtKB:P05067-PRO_0000000092 F Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000092
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP involved_in GO:0051260 PMID:15447668 IPI UniProtKB:P05067-PRO_0000000092 P Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000092
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP involved_in GO:0051260 PMID:15447668 IPI UniProtKB:P05067-PRO_0000000093 P Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL has_input(UniProtKB:P05067-PRO_0000000093) UniProtKB:P05067-PRO_0000000093
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP involved_in GO:0051260 PMID:18602473 IPI UniProtKB:P05067-PRO_0000000093 P Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL UniProtKB:P05067-PRO_0000000093
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P05067 APP involved_in GO:0051260 PMID:23386614 IPI UniProtKB:P05067-PRO_0000000092 P Amyloid-beta precursor protein APP|A4|AD1 protein taxon:9606 20230314 ARUK-UCL has_input(UniProtKB:P05067) UniProtKB:P05067-PRO_0000000092
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P10636 MAPT involved_in GO:0051260 PMID:26704708 IPI UniProtKB:P10636-8 P Microtubule-associated protein tau MAPT|MAPTL|MTBT1|TAU protein taxon:9606 20230314 ARUK-UCL happens_during(UBERON:0000112),happens_during(GO:0018105),occurs_in(UBERON:0002421),regulates(GO:0007611)|happens_during(UBERON:0018241),happens_during(GO:0018105),occurs_in(UBERON:0002421),regulates(GO:0007611) UniProtKB:P10636-8
`
- WARNING - Violates GO Rule:GORULE:0000046: The ‘with’ field (GAF column 8) must be the same as the gene product (GAF colummn 2) when annotating to ‘self-binding’ terms--`UniProtKB P15172 MYOD1 enables GO:0042803 GO_REF:0000024 ISS UniProtKB:P10085 F Myoblast determination protein 1 MYOD1|BHLHC1|MYF3|MYOD protein taxon:9606 20230314 ARUK-UCL UniProtKB:P15172
`
gorule-0000061
Allowed gene product to term relations (gp2term)
messages
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`MGI MGI:96247 Hsp90ab1 is_active_in GO:0101031 PMID:17517623 IMP C Heat shock protein HSP 90-beta protein taxon:10090 20240320 ARUK-UCL
`
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`MGI MGI:2442926 Mettl14 is_active_in GO:0036396 PMID:29290617 IDA C N(6)-adenosine-methyltransferase non-catalytic subunit METTL14 protein taxon:10090 20240206 ARUK-UCL
`
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`RGD 1303075 Hsp90ab1 is_active_in GO:0101031 PMID:17517623|RGD:13514081 IMP C heat shock protein 90 alpha family class B member 1 gene taxon:10116 20240320 ARUK-UCL
`
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`RGD 61912 Slc6a6 is_active_in GO:0098797 PMID:29491210|RGD:21201269 IPI UniProtKB:Q9JJ19 C solute carrier family 6 member 6 gene taxon:10116 20200115 ARUK-UCL part_of(UBERON:0000955)
`
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`RGD 708538 Nherf1 is_active_in GO:0098797 PMID:29491210|RGD:21201269 IPI UniProtKB:P31643 C NHERF family PDZ scaffold protein 1 gene taxon:10116 20200115 ARUK-UCL part_of(UBERON:0000955)
`
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB O14745 NHERF1 is_active_in GO:0098797 GO_REF:0000024 ISS UniProtKB:Q9JJ19 C Na(+)/H(+) exchange regulatory cofactor NHE-RF1 NHERF1|NHERF|SLC9A3R1 protein taxon:9606 20200115 ARUK-UCL part_of(UBERON:0000955) UniProtKB:O14745
`
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P02649 APOE is_active_in GO:0034360 PMID:7683668 IDA C Apolipoprotein E APOE protein taxon:9606 20230531 ARUK-UCL UniProtKB:P02649
`
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P02649 APOE is_active_in GO:0034361 PMID:7683668 IDA C Apolipoprotein E APOE protein taxon:9606 20230531 ARUK-UCL UniProtKB:P02649
`
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P08238 HSP90AB1 is_active_in GO:0101031 PMID:17517623 IMP C Heat shock protein HSP 90-beta HSP90AB1|HSP90B|HSPC2|HSPC3|HSPCB protein taxon:9606 20240320 ARUK-UCL UniProtKB:P08238
`
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB P31641 SLC6A6 is_active_in GO:0098797 GO_REF:0000024 ISS UniProtKB:P31643 C Sodium- and chloride-dependent taurine transporter SLC6A6 protein taxon:9606 20200115 ARUK-UCL part_of(UBERON:0000955) UniProtKB:P31641
`
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB Q9HCE5 METTL14 is_active_in GO:0036396 PMID:29290617 IDA C N(6)-adenosine-methyltransferase non-catalytic subunit METTL14 METTL14|KIAA1627 protein taxon:9606 20240206 ARUK-UCL UniProtKB:Q9HCE5
`
- WARNING - Violates GO Rule:GORULE:0000061: Found violation of: `Only certain gene product to term relations are allowed for a given GO term` but was repaired: RO:0002432 should be one of BFO:0000050. Repaired to BFO:0000050--`UniProtKB Q9Y2G2 CARD8 is_active_in GO:0140634 PMID:15030775 IDA C Caspase recruitment domain-containing protein 8 CARD8|DACAR|KIAA0955|NDPP1 protein taxon:9606 20240215 ARUK-UCL UniProtKB:Q9Y2G2
`