Overview

The gene association files ingested from GO Consortium members are shown in the table below. Files are in the GO annotation file format and are compressed using the UNIX gzip utility. Please see the upstream resource information for further details on the annotation set. Any errors or omissions in annotations should be reported by writing to the GO Helpdesk.


Filtered Files

These files are taxon-specific and reflect the work of specific projects, primarily the model organisms database groups, to provide comprehensive, non-redundant annotation files for their organism. All the files in this table have been filtered using the annotation file QC pipeline. A major component to the filtering is the requirement that particular taxon IDs can only be included within the association files provided by specific projects; the current list of authoritative groups and major model organisms can be found below.


Filtered Annotation File Downloads for 2019-08-21 release

Species/Database Entity type Annotations File
Species/Database Entity type Annotations File
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
rna 2702 goa_chicken_rna.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
isoform 45536 goa_pig_isoform.gaf (gzip)
Dictyostelium discoideum
dictyBase (dictyBase)
n/a 59635 dictybase.gaf (gzip)
Mus musculus
Mouse Genome Informatics (mgi)
n/a 353207 mgi.gaf (gzip)
Aspergillus nidulans
Aspergillus Genome Database (aspgd)
n/a 665490 aspgd.gaf (gzip)
Solanaceae
Sol Genomics Network (sgn)
n/a 1377 sgn.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
protein 128500 goa_pig.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
complex 25 goa_chicken_complex.gaf (gzip)
Danio rerio
Zebrafish Information Network (zfin)
n/a 163773 zfin.gaf (gzip)
Multi-species
Plant-Associated Microbe Gene Ontology Interest Group (pamgo)
n/a 26628 pamgo_mgrisea.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
rna 79189 goa_cow_rna.gaf (gzip)
Multi-species
Encyclopedia of E. coli metabolism (ecocyc)
n/a 53812 ecocyc.gaf (gzip)
Rattus norvegicus
Rat Genome Database (rgd)
n/a 390532 rgd.gaf (gzip)
Saccharomyces cerevisiae
Saccharomyces Genome Database (sgd)
n/a 104316 sgd.gaf (gzip)
Multi-species
Gene Ontology Normal Usage Tracking System (GONUTS) (gonuts)
n/a 1148 gonuts.gaf (gzip)
Schizosaccharomyces pombe
PomBase (pombase)
n/a 41859 pombase.gaf (gzip)
Multi-species
GeneDB (genedb)
n/a 6256 genedb_pfalciparum.gaf (gzip)
Pseudomonas aeruginosa
Pseudomonas Genome Project (pseudocap)
n/a 3717 pseudocap.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
complex 14 goa_pig_complex.gaf (gzip)
Multi-species
Plant-Associated Microbe Gene Ontology Interest Group (pamgo)
n/a 277 pamgo_ddadantii.gaf (gzip)
Drosophila melanogaster
FlyBase (fb)
n/a 88150 fb.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
protein 428720 goa_human.gaf (gzip)
Caenorhabditis elegans
WormBase database of nematode biology (wb)
n/a 93472 wb.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
isoform 13204 goa_dog_isoform.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
protein 122418 goa_cow.gaf (gzip)
Multi-species
GeneDB (genedb)
n/a 6318 genedb_lmajor.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
rna 24580 goa_dog_rna.gaf (gzip)
Multi-species
J. Craig Venter Institute (jcvi)
n/a 150049 jcvi.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
complex 1618 goa_human_complex.gaf (gzip)
Multi-species
Plant-Associated Microbe Gene Ontology Interest Group (pamgo)
n/a 250 pamgo_atumefaciens.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
complex 11 goa_cow_complex.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
complex 0 goa_dog_complex.gaf (gzip)
Oryza sativa
Gramene (gramene)
n/a 49966 gramene_oryza.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
isoform 34941 goa_cow_isoform.gaf (gzip)
Multi-species
Reactome - a curated knowledgebase of biological pathways (reactome)
n/a 106671 reactome.gaf (gzip)
Multi-species
Plant-Associated Microbe Gene Ontology Interest Group (pamgo)
n/a 125 pamgo_oomycetes.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
isoform 24740 goa_chicken_isoform.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
rna 14336 goa_pig_rna.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
isoform 105149 goa_human_isoform.gaf (gzip)
Multi-species
Candida Genome Database (cgd)
n/a 320837 cgd.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
protein 96443 goa_chicken.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
protein 115625 goa_dog.gaf (gzip)
Multi-species
GeneDB (genedb)
n/a 19354 genedb_tbrucei.gaf (gzip)
Arabidopsis thaliana
The Arabidopsis Information Resource (tair)
n/a 192002 tair.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
rna 41311 goa_human_rna.gaf (gzip)

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The Gene Ontology Consortium is supported by a P41 grant from the National Human Genome Research Institute (NHGRI) [grant 5U41HG002273-14]. The Gene Ontology Consortium would like to acknowledge the assistance of many more people than can be listed here. Please visit the acknowledgements page for the full list.