Overview

The gene association files ingested from GO Consortium members are shown in the table below. Files are in the GO annotation file format and are compressed using the UNIX gzip utility. Please see the upstream resource information for further details on the annotation set. Any errors or omissions in annotations should be reported by writing to the GO Helpdesk.


Filtered Files

These files are taxon-specific and reflect the work of specific projects, primarily the model organisms database groups, to provide comprehensive, non-redundant annotation files for their organism. All the files in this table have been filtered using the annotation file QC pipeline. A major component to the filtering is the requirement that particular taxon IDs can only be included within the association files provided by specific projects; the current list of authoritative groups and major model organisms can be found below.


Filtered Annotation File Downloads for 2018-08-18 release

Species/Database Entity type Annotations File
Species/Database Entity type Annotations File
EBI Gene Ontology Annotation Database (goa, Ggal) rna 3200 goa_chicken_rna.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Sscr) isoform 41510 goa_pig_isoform.gaf (gzip)
dictyBase (dictybase, Ddis) n/a 59208 dictybase.gaf (gzip)
Mouse Genome Informatics (mgi, Mmus) n/a 349748 mgi.gaf (gzip)
Aspergillus Genome Database (aspgd, Aspergillus) n/a 633567 aspgd.gaf (gzip)
Sol Genomics Network (sgn, Solanaceae) n/a 1458 sgn.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Sscr) protein 144168 goa_pig.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Ggal) complex 25 goa_chicken_complex.gaf (gzip)
Zebrafish Information Network (zfin, Drer) n/a 165921 zfin.gaf (gzip)
Plant-Associated Microbe Gene Ontology Interest Group (pamgo, multi) n/a 52132 pamgo_mgrisea.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Btau) rna 61707 goa_cow_rna.gaf (gzip)
Encyclopedia of E. coli metabolism (ecocyc, multi) n/a 22788 ecocyc.gaf (gzip)
Rat Genome Database (rgd, Rnor) n/a 384794 rgd.gaf (gzip)
Saccharomyces Genome Database (sgd, Scer) n/a 106670 sgd.gaf (gzip)
Gene Ontology Normal Usage Tracking System (GONUTS) (gonuts, multi) n/a 1164 gonuts.gaf (gzip)
PomBase (pombase, Spom) n/a 41304 pombase.gaf (gzip)
GeneDB (genedb, multi) n/a 6298 genedb_pfalciparum.gaf (gzip)
Pseudomonas Genome Project (pseudocap, Pseudomonas) n/a 3665 pseudocap.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Sscr) complex 14 goa_pig_complex.gaf (gzip)
Plant-Associated Microbe Gene Ontology Interest Group (pamgo, multi) n/a 313 pamgo_ddadantii.gaf (gzip)
FlyBase (fb, Dmel) n/a 90370 fb.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Hsap) protein 422114 goa_human.gaf (gzip)
WormBase database of nematode biology (wb, Cele) n/a 94520 wb.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Cfam) isoform 13299 goa_dog_isoform.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Btau) protein 147727 goa_cow.gaf (gzip)
GeneDB (genedb, multi) n/a 6271 genedb_lmajor.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Cfam) rna 26266 goa_dog_rna.gaf (gzip)
J. Craig Venter Institute (jcvi, multi) n/a 162401 jcvi.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Hsap) complex 1440 goa_human_complex.gaf (gzip)
Plant-Associated Microbe Gene Ontology Interest Group (pamgo, multi) n/a 250 pamgo_atumefaciens.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Btau) complex 11 goa_cow_complex.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Cfam) complex 0 goa_dog_complex.gaf (gzip)
gramene_oryza (gramene, Oryz) n/a 124450 gramene_oryza.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Btau) isoform 4928 goa_cow_isoform.gaf (gzip)
Reactome - a curated knowledgebase of biological pathways (reactome, multi) n/a 104799 reactome.gaf (gzip)
Plant-Associated Microbe Gene Ontology Interest Group (pamgo, multi) n/a 126 pamgo_oomycetes.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Ggal) isoform 25582 goa_chicken_isoform.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Sscr) rna 15757 goa_pig_rna.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Hsap) isoform 100788 goa_human_isoform.gaf (gzip)
Candida Genome Database (cgd, multi) n/a 292323 cgd.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Ggal) protein 117783 goa_chicken.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Cfam) protein 124831 goa_dog.gaf (gzip)
GeneDB (genedb, multi) n/a 19050 genedb_tbrucei.gaf (gzip)
The Arabidopsis Information Resource (tair, Atal) n/a 197811 tair.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Hsap) rna 39705 goa_human_rna.gaf (gzip)

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The Gene Ontology Consortium is supported by a P41 grant from the National Human Genome Research Institute (NHGRI) [grant 5U41HG002273-14]. The Gene Ontology Consortium would like to acknowledge the assistance of many more people than can be listed here. Please visit the acknowledgements page for the full list.