Overview

The gene association files ingested from GO Consortium members are shown in the table below. Files are in the GO annotation file format and are compressed using the UNIX gzip utility. Please see the upstream resource information for further details on the annotation set. Any errors or omissions in annotations should be reported by writing to the GO Helpdesk.


Filtered Files

These files are taxon-specific and reflect the work of specific projects, primarily the model organisms database groups, to provide comprehensive, non-redundant annotation files for their organism. All the files in this table have been filtered using the annotation file QC pipeline. A major component to the filtering is the requirement that particular taxon IDs can only be included within the association files provided by specific projects; the current list of authoritative groups and major model organisms can be found below.


Filtered Annotation File Downloads for 2024-03-21 release

Species/Database Entity type Annotations File
Species/Database Entity type Annotations File
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
rna 2769 goa_chicken_rna.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
isoform 126192 goa_pig_isoform.gaf (gzip)
Dictyostelium discoideum
dictyBase (dictyBase)
n/a 79639 dictybase.gaf (gzip)
Mus musculus
Mouse Genome Informatics (mgi)
n/a 342796 mgi.gaf (gzip)
Solanaceae
Sol Genomics Network (sgn)
gene 1356 sgn.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
protein 144816 goa_pig.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
complex 103 goa_chicken_complex.gaf (gzip)
Danio rerio
Zebrafish Information Network (zfin)
n/a 213274 zfin.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
rna 10844 goa_cow_rna.gaf (gzip)
Escherichia coli
Encyclopedia of E. coli metabolism (ecocyc)
n/a 68267 ecocyc.gaf (gzip)
Rattus norvegicus
Rat Genome Database (rgd)
n/a 484490 rgd.gaf (gzip)
Saccharomyces cerevisiae
Saccharomyces Genome Database (sgd)
n/a 122500 sgd.gaf (gzip)
Schizosaccharomyces pombe
PomBase (pombase)
n/a 53635 pombase.gaf (gzip)
Plasmodium falciparum
GeneDB (genedb)
n/a 10691 genedb_pfalciparum.gaf (gzip)
Pseudomonas aeruginosa
Pseudomonas Genome Project (pseudocap)
n/a 3624 pseudocap.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
complex 23 goa_pig_complex.gaf (gzip)
Drosophila melanogaster
FlyBase (fb)
n/a 133762 fb.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
protein 644346 goa_human.gaf (gzip)
Caenorhabditis elegans
WormBase database of nematode biology (wb)
n/a 129002 wb.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
isoform 123956 goa_dog_isoform.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
protein 116634 goa_cow.gaf (gzip)
Leishmania major
GeneDB (genedb)
n/a 9859 genedb_lmajor.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
rna 15469 goa_dog_rna.gaf (gzip)
Xenopus
Xenbase (xenbase)
n/a 407293 xenbase.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
complex 2109 goa_human_complex.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
complex 36 goa_cow_complex.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
complex 2 goa_dog_complex.gaf (gzip)
Bos taurus
EBI Gene Ontology Annotation Database (goa)
isoform 79082 goa_cow_isoform.gaf (gzip)
Schizosaccharomyces japonicus
JaponicusDB (japonicusdb)
n/a 35320 japonicusdb.gaf (gzip)
Multi-species
Reactome - a curated knowledgebase of biological pathways (reactome)
n/a 99663 reactome.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
isoform 122167 goa_chicken_isoform.gaf (gzip)
Sus scrofa
EBI Gene Ontology Annotation Database (goa)
rna 22212 goa_pig_rna.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
isoform 280858 goa_human_isoform.gaf (gzip)
Multi-species
Candida Genome Database (cgd)
n/a 367610 cgd.gaf (gzip)
Gallus gallus
EBI Gene Ontology Annotation Database (goa)
protein 155567 goa_chicken.gaf (gzip)
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa)
protein 161218 goa_dog.gaf (gzip)
Trypanosoma brucei
GeneDB (genedb)
n/a 20213 genedb_tbrucei.gaf (gzip)
Arabidopsis thaliana
The Arabidopsis Information Resource (tair)
n/a 235708 tair.gaf (gzip)
Homo sapiens
EBI Gene Ontology Annotation Database (goa)
rna 55046 goa_human_rna.gaf (gzip)

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The Gene Ontology Consortium is funded by the National Human Genome Research Institute (US National Institutes of Health), grant number HG012212, with co-funding by NIGMS.