The gene association files ingested from GO Consortium members are shown in the table below. Files are in the GO annotation file format and are compressed using the UNIX gzip utility. Please see the upstream resource information for further details on the annotation set. Any errors or omissions in annotations should be reported by writing to the GO Helpdesk.
These files are taxon-specific and reflect the work of specific projects, primarily the model organisms database groups, to provide comprehensive, non-redundant annotation files for their organism. All the files in this table have been filtered using the annotation file QC pipeline. A major component to the filtering is the requirement that particular taxon IDs can only be included within the association files provided by specific projects; the current list of authoritative groups and major model organisms can be found below.
| Species/Database | Entity type | Annotations | File |
|---|---|---|---|
| Species/Database | Entity type | Annotations | File |
|
Dictyostelium discoideum
dictyBase (dictyBase) |
n/a | 83351 | dictybase.gaf (gzip) |
|
Mus musculus
Mouse Genome Informatics (mgi) |
n/a | 776316 | mgi.gaf (gzip) |
|
Solanaceae
Sol Genomics Network (sgn) |
gene | 1354 | sgn.gaf (gzip) |
|
Sus scrofa
EBI Gene Ontology Annotation Database (goa) |
all | 331684 | goa_pig.gaf (gzip) |
|
Danio rerio
Zebrafish Information Network (zfin) |
n/a | 260269 | zfin.gaf (gzip) |
|
Escherichia coli
Encyclopedia of E. coli metabolism (ecocyc) |
n/a | 65867 | ecocyc.gaf (gzip) |
|
Rattus norvegicus
Rat Genome Database (rgd) |
n/a | 651887 | rgd.gaf (gzip) |
|
Saccharomyces cerevisiae
Saccharomyces Genome Database (sgd) |
n/a | 152216 | sgd.gaf (gzip) |
|
Schizosaccharomyces pombe
PomBase (pombase) |
n/a | 56421 | pombase.gaf (gzip) |
|
Plasmodium falciparum
GeneDB (genedb) |
n/a | 10673 | genedb_pfalciparum.gaf (gzip) |
|
Pseudomonas aeruginosa
Pseudomonas Genome Project (pseudocap) |
n/a | 32381 | pseudocap.gaf (gzip) |
|
Drosophila melanogaster
FlyBase (fb) |
n/a | 138318 | fb.gaf (gzip) |
|
Homo sapiens
EBI Gene Ontology Annotation Database (goa) |
all | 1019967 | goa_human.gaf (gzip) |
|
Caenorhabditis elegans
WormBase database of nematode biology (wb) |
n/a | 138600 | wb.gaf (gzip) |
|
Bos taurus
EBI Gene Ontology Annotation Database (goa) |
all | 342409 | goa_cow.gaf (gzip) |
|
Leishmania major
GeneDB (genedb) |
n/a | 9849 | genedb_lmajor.gaf (gzip) |
|
Xenopus
Xenbase (tropicalis) (xenbase) |
n/a | 376953 | xenbase.gaf (gzip) |
|
Schizosaccharomyces japonicus
JaponicusDB (japonicusdb) |
n/a | 15673 | japonicusdb.gaf (gzip) |
|
Multi-species
Reactome - a curated knowledgebase of biological pathways (reactome) |
n/a | 103352 | reactome.gaf (gzip) |
|
Multi-species
Candida Genome Database (cgd) |
n/a | 361231 | cgd.gaf (gzip) |
|
Gallus gallus
EBI Gene Ontology Annotation Database (goa) |
all | 313718 | goa_chicken.gaf (gzip) |
|
Canis lupus familiaris
EBI Gene Ontology Annotation Database (goa) |
all | 286406 | goa_dog.gaf (gzip) |
|
Trypanosoma brucei
GeneDB (genedb) |
n/a | 20193 | genedb_tbrucei.gaf (gzip) |
|
Arabidopsis thaliana
The Arabidopsis Information Resource (tair) |
n/a | 226245 | tair.gaf (gzip) |
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