Overview

The gene association files ingested from GO Consortium members are shown in the table below. Files are in the GO annotation file format and are compressed using the UNIX gzip utility. Please see the upstream resource information for further details on the annotation set. Any errors or omissions in annotations should be reported by writing to the GO Helpdesk.


Filtered Files

These files are taxon-specific and reflect the work of specific projects, primarily the model organisms database groups, to provide comprehensive, non-redundant annotation files for their organism. All the files in this table have been filtered using the annotation file QC pipeline. A major component to the filtering is the requirement that particular taxon IDs can only be included within the association files provided by specific projects; the current list of authoritative groups and major model organisms can be found below.


Filtered Annotation File Downloads for 2018-10-19 release

Species/Database Entity type Annotations File
Species/Database Entity type Annotations File
EBI Gene Ontology Annotation Database (goa, Ggal) rna 3188 goa_chicken_rna.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Sscr) isoform 39862 goa_pig_isoform.gaf (gzip)
dictyBase (dictybase, Ddis) n/a 59138 dictybase.gaf (gzip)
Mouse Genome Informatics (mgi, Mmus) n/a 346834 mgi.gaf (gzip)
Aspergillus Genome Database (aspgd, Aspergillus) n/a 623172 aspgd.gaf (gzip)
Sol Genomics Network (sgn, Solanaceae) n/a 1428 sgn.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Sscr) protein 139186 goa_pig.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Ggal) complex 25 goa_chicken_complex.gaf (gzip)
Zebrafish Information Network (zfin, Drer) n/a 163321 zfin.gaf (gzip)
Plant-Associated Microbe Gene Ontology Interest Group (pamgo, multi) n/a 26627 pamgo_mgrisea.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Btau) rna 61691 goa_cow_rna.gaf (gzip)
Encyclopedia of E. coli metabolism (ecocyc, multi) n/a 20810 ecocyc.gaf (gzip)
Rat Genome Database (rgd, Rnor) n/a 383050 rgd.gaf (gzip)
Saccharomyces Genome Database (sgd, Scer) n/a 104675 sgd.gaf (gzip)
Gene Ontology Normal Usage Tracking System (GONUTS) (gonuts, multi) n/a 1139 gonuts.gaf (gzip)
PomBase (pombase, Spom) n/a 41406 pombase.gaf (gzip)
GeneDB (genedb, multi) n/a 6162 genedb_pfalciparum.gaf (gzip)
Pseudomonas Genome Project (pseudocap, Pseudomonas) n/a 3639 pseudocap.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Sscr) complex 11 goa_pig_complex.gaf (gzip)
Plant-Associated Microbe Gene Ontology Interest Group (pamgo, multi) n/a 304 pamgo_ddadantii.gaf (gzip)
FlyBase (fb, Dmel) n/a 88968 fb.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Hsap) protein 419441 goa_human.gaf (gzip)
WormBase database of nematode biology (wb, Cele) n/a 93960 wb.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Cfam) isoform 13188 goa_dog_isoform.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Btau) protein 138071 goa_cow.gaf (gzip)
GeneDB (genedb, multi) n/a 6241 genedb_lmajor.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Cfam) rna 26266 goa_dog_rna.gaf (gzip)
J. Craig Venter Institute (jcvi, multi) n/a 144693 jcvi.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Hsap) complex 1373 goa_human_complex.gaf (gzip)
Plant-Associated Microbe Gene Ontology Interest Group (pamgo, multi) n/a 183 pamgo_atumefaciens.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Btau) complex 8 goa_cow_complex.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Cfam) complex 0 goa_dog_complex.gaf (gzip)
gramene_oryza (gramene, Oryz) n/a 47260 gramene_oryza.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Btau) isoform 4877 goa_cow_isoform.gaf (gzip)
Reactome - a curated knowledgebase of biological pathways (reactome, multi) n/a 104925 reactome.gaf (gzip)
Plant-Associated Microbe Gene Ontology Interest Group (pamgo, multi) n/a 125 pamgo_oomycetes.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Ggal) isoform 26117 goa_chicken_isoform.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Sscr) rna 15736 goa_pig_rna.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Hsap) isoform 100548 goa_human_isoform.gaf (gzip)
Candida Genome Database (cgd, multi) n/a 298176 cgd.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Ggal) protein 104949 goa_chicken.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Cfam) protein 115729 goa_dog.gaf (gzip)
GeneDB (genedb, multi) n/a 18833 genedb_tbrucei.gaf (gzip)
The Arabidopsis Information Resource (tair, Atal) n/a 209829 tair.gaf (gzip)
EBI Gene Ontology Annotation Database (goa, Hsap) rna 39755 goa_human_rna.gaf (gzip)

Copyright © 1999-2018 the Gene Ontology (CC-BY 4.0)
HelpdeskCitation/attributionTerms of useRSS
Member of the Open Biological and Biomedical Ontologies

The Gene Ontology Consortium is supported by a P41 grant from the National Human Genome Research Institute (NHGRI) [grant 5U41HG002273-14]. The Gene Ontology Consortium would like to acknowledge the assistance of many more people than can be listed here. Please visit the acknowledgements page for the full list.