!date: 2024/11/19 15:04:52 ! !WARNING: This file is READ-ONLY. Any changes will be overwritten. !WARNING: The upstream read/write version is available at: !WARNING: https://github.com/geneontology/go-site/blob/master/metadata/db-xrefs.yaml ! !Gene Ontology !Abbreviations for cross-referenced databases. ! !Note that URLs are not necessarily stable entities and that some !databases may have many other access routes or mirror sites. ! !This data is available as a web page at !http://amigo.geneontology.org/xrefs abbreviation: AgBase database: AgBase resource for functional analysis of agricultural plant and animal gene products generic_url: http://www.agbase.msstate.edu/ url_syntax: https://agbase.arizona.edu/cgi-bin/getEntry.pl?db_pick=all&database=Swiss-Prot&gb_acc=[example_id] example_id: P02264 entity_type: BET:0000000 ! entity abbreviation: AGI_LocusCode database: Arabidopsis Genome Initiative description: Comprises TAIR, TIGR and MIPS generic_url: http://www.arabidopsis.org local_id_syntax: A[Tt][MmCc0-5][Gg][0-9]{5}(\.[0-9]{1})? url_syntax: http://arabidopsis.org/servlets/TairObject?type=locus&name=[example_id] example_id: AGI_LocusCode:At2g17950 url_example: https://www.arabidopsis.org/servlets/TairObject?type=locus&name=At2g17950 entity_type: SO:0000704 ! gene abbreviation: AGRICOLA_ID database: AGRICultural OnLine Access generic_url: http://agricola.nal.usda.gov/ example_id: AGRICOLA_NAL:TP248.2 P76 v.14 entity_type: BET:0000000 ! entity abbreviation: AGRICOLA_IND database: AGRICultural OnLine Access generic_url: http://agricola.nal.usda.gov/ example_id: AGRICOLA_IND:IND23252955 entity_type: BET:0000000 ! entity abbreviation: Alzheimers_University_of_Toronto database: Alzheimers Project at University of Toronto generic_url: http://www.ims.utoronto.ca/ entity_type: BET:0000000 ! entity abbreviation: APweb database: Angiosperm Phylogeny Website generic_url: http://www.mobot.org/mobot/research/apweb/ url_syntax: http://www.mobot.org/mobot/research/apweb/top/glossarya_h.html example_id: APweb:Glossary url_example: http://www.mobot.org/mobot/research/apweb/top/glossarya_h.html entity_type: BET:0000000 ! entity abbreviation: ARUK-UCL database: Alzheimers Research Gene Ontology Initiative generic_url: https://www.ucl.ac.uk/cardiovascular/research/pre-clinical-and-fundamental-science/functional-gene-annotation/neurological-gene-0 entity_type: BET:0000000 ! entity abbreviation: ASAP database: A Systematic Annotation Package for Community Analysis of Genomes generic_url: https://asap.genetics.wisc.edu/asap/ASAP1.htm url_syntax: https://asap.genetics.wisc.edu/asap/feature_info.php?FeatureID=[example_id] example_id: ASAP:ABF-0014586 url_example: https://asap.genetics.wisc.edu/asap/feature_info.php?FeatureID=ABF-0014586 entity_type: SO:0000704 ! gene abbreviation: AspGD database: Aspergillus Genome Database synonym: ASPGD synonym: AspGDID generic_url: http://www.aspergillusgenome.org/ local_id_syntax: ASPL[0-9]{10} url_syntax: http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=[example_id] example_id: AspGD:ASPL0000067538 url_example: http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=ASPL0000067538 entity_type: SO:0000704 ! gene abbreviation: AspGD_LOCUS database: Aspergillus Genome Database generic_url: http://www.aspergillusgenome.org/ url_syntax: http://www.aspergillusgenome.org/cgi-bin/locus.pl?locus=[example_id] example_id: AspGD_LOCUS:AN10942 url_example: http://www.aspergillusgenome.org/cgi-bin/locus.pl?locus=AN10942 entity_type: BET:0000000 ! entity abbreviation: AspGD_REF database: Aspergillus Genome Database generic_url: http://www.aspergillusgenome.org/ url_syntax: http://www.aspergillusgenome.org/cgi-bin/reference/reference.pl?dbid=[example_id] example_id: AspGD_REF:90 url_example: http://www.aspergillusgenome.org/cgi-bin/reference/reference.pl?dbid=90 entity_type: BET:0000000 ! entity abbreviation: BFO database: Basic Formal Ontology description: An upper ontology used by Open Bio Ontologies (OBO) Foundry. BFO contains upper-level classes as well as core relations such as part_of (BFO_0000050) generic_url: http://purl.obolibrary.org/obo/bfo url_syntax: http://purl.obolibrary.org/obo/BFO_[example_id] example_id: BFO:0000066 url_example: http://purl.obolibrary.org/obo/BFO_0000066 entity_type: BET:0000000 ! entity abbreviation: BHF-UCL database: Cardiovascular Gene Ontology Annotation Initiative description: The Cardiovascular Gene Ontology Annotation Initiative is supported by the British Heart Foundation (BHF) and located at University College London (UCL). generic_url: https://www.ucl.ac.uk/cardiovascular/research/pre-clinical-and-fundamental-science/functional-gene-annotation/cardiovascular-gene entity_type: BET:0000000 ! entity abbreviation: BioCyc database: BioCyc collection of metabolic pathway databases generic_url: http://biocyc.org/ url_syntax: http://biocyc.org/META/NEW-IMAGE?type=PATHWAY&object=[example_id] example_id: BioCyc:PWY-5271 url_example: http://biocyc.org/META/NEW-IMAGE?type=PATHWAY&object=PWY-5271 entity_type: BET:0000000 ! entity abbreviation: BIOMD database: BioModels Database synonym: BIOMDID generic_url: https://www.ebi.ac.uk/biomodels/ url_syntax: https://www.ebi.ac.uk/biomodels/[example_id] example_id: BIOMD:BIOMD0000000045 url_example: https://www.ebi.ac.uk/biomodels/BIOMD0000000045 entity_type: BET:0000000 ! entity abbreviation: BRENDA database: BRENDA, The Comprehensive Enzyme Information System generic_url: http://www.brenda-enzymes.info url_syntax: https://www.brenda-enzymes.info/enzyme.php?ecno=[example_id] example_id: BRENDA:4.2.1.3 url_example: https://www.brenda-enzymes.info/enzyme.php?ecno=4.2.1.3 entity_type: GO:0003824 ! catalytic activity abbreviation: BTO database: BRENDA tissue / enzyme ontology description: A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures. generic_url: http://purl.obolibrary.org/obo/bto url_syntax: http://purl.obolibrary.org/obo/BTO_[example_id] example_id: BTO_0002164 url_example: http://purl.obolibrary.org/obo/BTO_0002164 entity_type: BET:0000000 ! entity abbreviation: CACAO database: Community Assessment of Community Annotation with Ontologies description: The Community Assessment of Community Annotation with Ontologies (CACAO) is a project to do large-scale manual community annotation of gene function using the Gene Ontology as a multi-institution student competition. generic_url: http://gowiki.tamu.edu/wiki/index.php/Category:CACAO url_syntax: https://gowiki.tamu.edu/wiki/index.php/[example_id] example_id: MYCS2:A0QNF5 url_example: https://gowiki.tamu.edu/wiki/index.php/MYCS2:A0QNF5 entity_type: BET:0000000 ! entity abbreviation: CAFA database: Critical Assessment of Protein Function Annotation generic_url: http://biofunctionprediction.org/cafa/ entity_type: BET:0000000 ! entity abbreviation: CARO database: Common Anatomy Reference Ontology description: An upper ontology for anatomy used by OBO Foundry ontologies. Used to facilitate interoperability between existing anatomy ontologies for different species generic_url: http://purl.obolibrary.org/obo/caro url_syntax: http://purl.obolibrary.org/obo/CARO_[example_id] example_id: CARO:0020003 url_example: http://purl.obolibrary.org/obo/CARO_0020003 entity_type: BET:0000000 ! entity abbreviation: CAS database: CAS Chemical Registry description: CAS REGISTRY is the most authoritative collection of disclosed chemical substance information, containing more than 54 million organic and inorganic substances and 62 million sequences. CAS REGISTRY covers substances identified from the scientific literature from 1957 to the present, with additional substances going back to the early 1900s. generic_url: http://www.cas.org/expertise/cascontent/registry/index.html example_id: CAS:58-08-2 entity_type: BET:0000000 ! entity abbreviation: CASGEN database: Catalog of Fishes genus database synonym: CAS_GEN generic_url: https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp url_syntax: https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?genid=[example_id] example_id: CASGEN:1040 url_example: https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?genid=1040 entity_type: BET:0000000 ! entity abbreviation: CASREF database: Catalog of Fishes publications database generic_url: https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp url_syntax: https://researcharchive.calacademy.org/research/ichthyology/catalog/getref.asp?id=[example_id] example_id: CASREF:2031 url_example: https://researcharchive.calacademy.org/research/ichthyology/catalog/getref.asp?id=2031 entity_type: BET:0000000 ! entity abbreviation: CASSPC database: Catalog of Fishes species database synonym: CAS_SPC generic_url: https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp url_syntax: https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid=[example_id] url_example: https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid=1979 entity_type: BET:0000000 ! entity abbreviation: CAZY database: Carbohydrate Active EnZYmes description: The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds. generic_url: http://www.cazy.org/ local_id_syntax: (CE|GH|GT|PL)\d+ url_syntax: http://www.cazy.org/[example_id].html example_id: CAZY:PL11 url_example: http://www.cazy.org/PL11.html entity_type: BET:0000000 ! entity abbreviation: DTU database: DTU Health Tech Services description: Formerly CBS (Center for Biological Sequence Analysis) generic_url: http://www.cbs.dtu.dk/services example_id: CBS:TMHMM url_example: http://www.cbs.dtu.dk/services/TMHMM/ entity_type: BET:0000000 ! entity abbreviation: CDD database: Conserved Domain Database at NCBI generic_url: https://www.ncbi.nlm.nih.gov/cdd url_syntax: http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=[example_id] example_id: CDD:34222 url_example: http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=34222 entity_type: BET:0000000 ! entity abbreviation: CGD database: Candida Genome Database synonym: CGDID generic_url: http://www.candidagenome.org/ local_id_syntax: (CAL|CAF)[0-9]{10} url_syntax: http://www.candidagenome.org/cgi-bin/locus.pl?dbid=[example_id] example_id: CGD:CAL0000179664 url_example: http://www.candidagenome.org/cgi-bin/locus.pl?dbid=CAL0000179664 entity_type: SO:0000704 ! gene abbreviation: CGD_LOCUS database: Candida Genome Database generic_url: http://www.candidagenome.org/ url_syntax: http://www.candidagenome.org/cgi-bin/locus.pl?locus=[example_id] example_id: CGD_LOCUS:HWP1 url_example: http://www.candidagenome.org/cgi-bin/locus.pl?locus=HWP1 entity_type: BET:0000000 ! entity abbreviation: CGD_REF database: Candida Genome Database generic_url: http://www.candidagenome.org/ url_syntax: http://www.candidagenome.org/cgi-bin/reference/reference.pl?dbid=[example_id] example_id: CGD_REF:1490 url_example: http://www.candidagenome.org/cgi-bin/reference/reference.pl?dbid=1490 entity_type: BET:0000000 ! entity abbreviation: CGSC database: CGSC generic_url: http://cgsc.biology.yale.edu/ example_id: CGSC:rbsK url_example: http://cgsc.biology.yale.edu/Site.php?ID=315 entity_type: BET:0000000 ! entity abbreviation: CHEBI database: Chemical Entities of Biological Interest synonym: ChEBI generic_url: http://www.ebi.ac.uk/chebi/ local_id_syntax: [0-9]{1,6} url_syntax: http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:[example_id] example_id: CHEBI:17234 url_example: http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17234 entity_type: CHEBI:24431 ! chemical entity abbreviation: CL database: Cell Type Ontology generic_url: http://cellontology.org local_id_syntax: [0-9]{7} url_syntax: http://purl.obolibrary.org/obo/CL_[example_id] example_id: CL:0000041 url_example: http://purl.obolibrary.org/obo/CL_0000041 entity_type: GO:0005623 ! cell abbreviation: CO_125 database: Crop Ontology CGIAR Musa Anatomy generic_url: http://www.cropontology.org/ontology/CO_125:0000000/CGIAR_Musa_anatomy example_id: CO_125:0000002 url_example: http://www.cropontology.org/ontology/CO_125:0000000 entity_type: BET:0000000 ! entity abbreviation: COG database: NCBI Clusters of Orthologous Groups generic_url: http://www.ncbi.nlm.nih.gov/COG/ entity_type: BET:0000000 ! entity abbreviation: COG_Cluster database: NCBI COG cluster generic_url: http://www.ncbi.nlm.nih.gov/COG/ url_syntax: https://www.ncbi.nlm.nih.gov/research/cog/cog/[example_id] example_id: COG_Cluster:COG0001 url_example: https://www.ncbi.nlm.nih.gov/research/cog/cog/COG0001 entity_type: BET:0000000 ! entity abbreviation: COG_Function database: NCBI COG function generic_url: http://www.ncbi.nlm.nih.gov/COG/ url_syntax: http://www.ncbi.nlm.nih.gov/COG/grace/shokog.cgi?fun=[example_id] example_id: COG_Function:H url_example: http://www.ncbi.nlm.nih.gov/COG/grace/shokog.cgi?fun=H entity_type: BET:0000000 ! entity abbreviation: COG_Pathway database: NCBI COG pathway generic_url: http://www.ncbi.nlm.nih.gov/COG/ url_syntax: http://www.ncbi.nlm.nih.gov/COG/new/release/coglist.cgi?pathw=[example_id] example_id: COG_Pathway:14 url_example: http://www.ncbi.nlm.nih.gov/COG/new/release/coglist.cgi?pathw=14 entity_type: BET:0000000 ! entity abbreviation: CollecTF database: Database of transcription factor binding sites (TFBS) in the Bacteria domain generic_url: http://www.collectf.org/ entity_type: BET:0000000 ! entity abbreviation: ComplexPortal database: Complex Portal database of macromolecular complexes generic_url: https://www.ebi.ac.uk/complexportal local_id_syntax: CPX-[0-9]+ url_syntax: https://www.ebi.ac.uk/complexportal/complex/[example_id] example_id: ComplexPortal:CPX-2158 url_example: https://www.ebi.ac.uk/complexportal/complex/CPX-2158 entity_type: GO:0032991 ! macromolecular complex abbreviation: CORIELL database: Coriell Institute for Medical Research description: The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world. generic_url: http://ccr.coriell.org/ url_syntax: http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=[example_id] example_id: GM07892 url_example: http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM07892 entity_type: BET:0000000 ! entity abbreviation: CORUM database: CORUM - the Comprehensive Resource of Mammalian protein complexes generic_url: https://mips.helmholtz-muenchen.de/corum/ url_syntax: https://mips.helmholtz-muenchen.de/corum/?id=[example_id] example_id: CORUM:837 url_example: https://mips.helmholtz-muenchen.de/corum/?id=837 entity_type: BET:0000000 ! entity abbreviation: cribi_vitis database: Vitis CRIBI database generic_url: http://genomes.cribi.unipd.it url_syntax: http://genomes.cribi.unipd.it/cgi-bin/pqs2/report.pl?gene_name=[example_id]&release=v1 example_id: VIT_00s0173g00270 url_example: http://genomes.cribi.unipd.it/cgi-bin/pqs2/report.pl?gene_name=VIT_00s0173g00270&release=v1 entity_type: BET:0000000 ! entity abbreviation: dbSNP database: NCBI dbSNP generic_url: http://www.ncbi.nlm.nih.gov/projects/SNP local_id_syntax: \d+ url_syntax: http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=[example_id] example_id: dbSNP:rs3131969 url_example: http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=rs3131969 entity_type: BET:0000000 ! entity abbreviation: DDANAT database: Dictyostelium discoideum anatomy generic_url: http://dictybase.org/Dicty_Info/dicty_anatomy_ontology.html local_id_syntax: [0-9]{7} example_id: DDANAT:0000068 entity_type: CARO:0000000 ! anatomical entity abbreviation: DDBJ database: DNA Databank of Japan generic_url: https://www.ddbj.nig.ac.jp url_syntax: http://getentry.ddbj.nig.ac.jp/getentry/na/[example_id] example_id: DDBJ:AA816246 url_example: http://getentry.ddbj.nig.ac.jp/getentry/na/AA816246 entity_type: BET:0000000 ! entity abbreviation: dictyBase database: dictyBase synonym: DDB synonym: DictyBase generic_url: http://dictybase.org local_id_syntax: DDB_G[0-9]{7} url_syntax: http://dictybase.org/gene/[example_id] example_id: dictyBase:DDB_G0277859 url_example: http://dictybase.org/gene/DDB_G0277859 entity_type: SO:0000704 ! gene abbreviation: dictyBase_gene_name database: dictyBase generic_url: http://dictybase.org url_syntax: http://dictybase.org/gene/[example_id] example_id: dictyBase_gene_name:mlcE url_example: http://dictybase.org/gene/mlcE entity_type: BET:0000000 ! entity abbreviation: dictyBase_REF database: dictyBase literature references synonym: DDB_REF generic_url: http://dictybase.org url_syntax: http://dictybase.org/publication/[example_id] example_id: dictyBase_REF:10157 url_example: http://dictybase.org/publication/10157 entity_type: BET:0000000 ! entity abbreviation: DisProt database: DisProt description: Database of intrinsically disordered proteins generic_url: https://www.disprot.org url_syntax: https://www.disprot.org/[example_id] example_id: DP00086 url_example: https://www.disprot.org/DP00086 entity_type: BET:0000000 ! entity abbreviation: DOI database: Digital Object Identifier generic_url: http://dx.doi.org/ local_id_syntax: 10\.[0-9]+\/.* url_syntax: http://dx.doi.org/[example_id] example_id: DOI:10.1016/S0963-9969(99)00021-6 url_example: http://dx.doi.org/10.1016/S0963-9969(99)00021-6 entity_type: BET:0000000 ! entity abbreviation: EC database: Enzyme Commission generic_url: http://enzyme.expasy.org/ url_syntax: https://enzyme.expasy.org/EC/[example_id] example_id: EC:1.1.1.1 url_example: https://enzyme.expasy.org/EC/1.1.1.1 entity_type: GO:0003824 ! catalytic activity abbreviation: EchoBASE database: EchoBASE post-genomic database for Escherichia coli generic_url: https://www.york.ac.uk/res/thomas/ local_id_syntax: EB[0-9]{4} url_syntax: https://www.york.ac.uk/res/thomas/Gene.cfm?&recordID=[example_id] example_id: EchoBASE:EB0231 url_example: https://www.york.ac.uk/res/thomas/Gene.cfm?&recordID=EB0231 entity_type: SO:0000704 ! gene abbreviation: ECO database: Evidence Code Ontology generic_url: http://www.evidenceontology.org/ local_id_syntax: \d{7} url_syntax: http://www.evidenceontology.org/browse/#ECO_[example_id] example_id: ECO:0000315 url_example: http://www.evidenceontology.org/browse/#ECO_0000315 entity_type: BET:0000000 ! entity abbreviation: EcoCyc database: Scientific database for the bacterium Escherichia coli K-12 MG1655 generic_url: https://ecocyc.org/ local_id_syntax: ^[A-Za-z0-9+_.%-:]+$ url_syntax: https://ecocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=[example_id] example_id: EcoCyc:P2-PWY url_example: https://ecocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=P2-PWY entity_type: GO:0008150 ! biological_process local_id_syntax: ^[A-Za-z0-9+_.%-:]+$ url_syntax: https://ecocyc.org/gene?orgid=ECOLI&id=[example_id] example_id: EcoCyc:RBSA-MONOMER url_example: https://ecocyc.org/gene?orgid=ECOLI&id=RBSA-MONOMER entity_type: PR:000000001 ! protein local_id_syntax: ^[A-Za-z0-9+_.%-:]+$ url_syntax: https://ecocyc.org/gene?orgid=ECOLI&id=[example_id] example_id: EcoCyc:EG30086 url_example: https://ecocyc.org/gene?orgid=ECOLI&id=EG30086 entity_type: CHEBI:33697 ! ribonucleic acid local_id_syntax: ^[A-Za-z0-9+_.%-:]+$ url_syntax: https://ecocyc.org/ECOLI/NEW-IMAGE?id=[example_id] example_id: EcoCyc:ABC-28-CPLX url_example: https://ecocyc.org/ECOLI/NEW-IMAGE?id=ABC-28-CPLX entity_type: GO:0032991 ! protein-containing complex abbreviation: EcoCyc_REF database: Scientific database for the bacterium Escherichia coli K-12 MG1655 synonym: ECOCYC_REF generic_url: https://ecocyc.org/ url_syntax: https://ecocyc.org/ECOLI/reference.html?type=CITATION-FRAME&object=[example_id] example_id: EcoCyc_REF:COLISALII url_example: https://ecocyc.org/ECOLI/reference.html?type=CITATION-FRAME&object=COLISALII entity_type: BET:0000000 ! entity abbreviation: EcoliWiki database: EcoliWiki from EcoliHub description: EcoliHub\'s subsystem for community annotation of E. coli K-12 generic_url: http://ecoliwiki.net/ local_id_syntax: [A-Za-z]{3,4} entity_type: SO:0000704 ! gene abbreviation: EMAPA database: Mouse gross anatomy and development, abstract description: A time-independent Mouse Anatomical Dictionary; part of Gene Expression Database generic_url: http://emouseatlas.org/ local_id_syntax: [0-9]{5} url_syntax: http://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:[example_id] example_id: EMAPA:16032 url_example: http://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:16894 entity_type: CARO:0000000 ! anatomical entity abbreviation: EMBL database: EMBL Nucleotide Sequence Database description: International nucleotide sequence database collaboration, comprising EMBL-EBI nucleotide sequence data library (EMBL-Bank), DNA DataBank of Japan (DDBJ), and NCBI GenBank generic_url: http://www.ebi.ac.uk/embl/ local_id_syntax: ([A-Z]{1}[0-9]{5})|([A-Z]{2}[0-9]{6})|([A-Z]{4}[0-9]{8,9}) url_syntax: http://www.ebi.ac.uk/cgi-bin/emblfetch?style=html&Submit=Go&id=[example_id] example_id: EMBL:AA816246 url_example: http://www.ebi.ac.uk/cgi-bin/emblfetch?style=html&Submit=Go&id=AA816246 entity_type: SO:0000704 ! gene abbreviation: ENA database: European Nucleotide Archive description: ENA is made up of a number of distinct databases that includes EMBL-Bank, the newly established Sequence Read Archive (SRA) and the Trace Archive. International nucleotide sequence database collaboration, comprising ENA-EBI nucleotide sequence data library (EMBL-Bank), DNA DataBank of Japan (DDBJ), and NCBI GenBank generic_url: http://www.ebi.ac.uk/ena/ local_id_syntax: ([A-Z]{1}[0-9]{5})|([A-Z]{2}[0-9]{6})|([A-Z]{4}[0-9]{8,9}) url_syntax: http://www.ebi.ac.uk/ena/data/view/[example_id] example_id: ENA:AA816246 url_example: http://www.ebi.ac.uk/ena/data/view/AA816246 entity_type: BET:0000000 ! entity abbreviation: ENSEMBL database: Ensembl database of automatically annotated genomic data synonym: Ensembl synonym: ensembl generic_url: http://www.ensembl.org/ local_id_syntax: ENS[A-Z0-9]{10,17} url_syntax: http://www.ensembl.org/id/[example_id] example_id: ENSEMBL:ENSP00000265949 url_example: http://www.ensembl.org/id/ENSP00000265949 entity_type: SO:0000704 ! gene local_id_syntax: ENS[A-Z0-9]{10,17} url_syntax: http://www.ensembl.org/id/[example_id] example_id: ENSEMBL:ENSP00000265949 url_example: http://www.ensembl.org/id/ENSP00000265949 entity_type: PR:000000001 ! protein local_id_syntax: ENS[A-Z0-9]{10,17} url_syntax: http://www.ensembl.org/id/[example_id] example_id: ENSEMBL:ENSP00000265949 url_example: http://www.ensembl.org/id/ENSP00000265949 entity_type: SO:0000673 ! transcript abbreviation: ENSEMBL_GeneID database: Ensembl database of automatically annotated genomic data generic_url: http://www.ensembl.org/ local_id_syntax: ENSG[0-9]{9,16} url_syntax: http://www.ensembl.org/id/[example_id] example_id: ENSEMBL_GeneID:ENSG00000126016 url_example: http://www.ensembl.org/id/ENSG00000126016 entity_type: SO:0000704 ! gene abbreviation: ENSEMBL_ProteinID database: Ensembl database of automatically annotated genomic data generic_url: http://www.ensembl.org/ local_id_syntax: ENSP[0-9]{9,16} url_syntax: http://www.ensembl.org/id/[example_id] example_id: ENSEMBL_ProteinID:ENSP00000361027 url_example: http://www.ensembl.org/id/ENSP00000361027 entity_type: PR:000000001 ! protein abbreviation: ENSEMBL_TranscriptID database: Ensembl database of automatically annotated genomic data generic_url: http://www.ensembl.org/ local_id_syntax: ENST[0-9]{9,16} url_syntax: http://www.ensembl.org/id/[example_id] example_id: ENSEMBL_TranscriptID:ENST00000371959 url_example: http://www.ensembl.org/id/ENST00000371959 entity_type: SO:0000673 ! transcript abbreviation: EnsemblFungi database: Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi. generic_url: http://fungi.ensembl.org/ url_syntax: http://www.ensemblgenomes.org/id/[example_id] example_id: EnsemblFungi:YOR197W url_example: http://www.ensemblgenomes.org/id/YOR197W entity_type: SO:0000704 ! gene abbreviation: EnsemblMetazoa database: Ensembl Metazoa, the Ensembl database for accessing genome-scale data from non-vertebrate metazoa. generic_url: http://metazoa.ensembl.org/ url_syntax: http://www.ensemblgenomes.org/id/[example_id] example_id: EnsemblMetazoa:FBgn0052693 url_example: http://www.ensemblgenomes.org/id/FBgn0052693 entity_type: SO:0000704 ! gene abbreviation: EnsemblPlants database: Ensembl Plants, the Ensembl database for accessing genome-scale data from plants. synonym: EnsemblPlants/Gramene generic_url: http://plants.ensembl.org/ url_syntax: http://www.ensemblgenomes.org/id/[example_id] example_id: EnsemblPlants:LOC_Os01g22954 url_example: http://www.ensemblgenomes.org/id/LOC_Os01g22954 entity_type: SO:0000704 ! gene abbreviation: EnsemblProtists database: Ensembl Protists, the Ensembl database for accessing genome-scale data from protists. generic_url: http://protists.ensembl.org/ url_syntax: http://www.ensemblgenomes.org/id/[example_id] example_id: EnsemblProtists:PFL2550w url_example: http://www.ensemblgenomes.org/id/PFL2550w entity_type: SO:0000704 ! gene abbreviation: ENZYME database: Swiss Institute of Bioinformatics enzyme database generic_url: https://enzyme.expasy.org/ url_syntax: https://enzyme.expasy.org/EC/[example_id] example_id: 1.1.1.1 url_example: https://enzyme.expasy.org/EC/1.1.1.1 entity_type: BET:0000000 ! entity abbreviation: EO_GIT database: GitHub Issue Tracker for EO generic_url: https://github.com/Planteome/plant-environment-ontology url_syntax: https://github.com/Planteome/plant-environment-ontology/issues/[example_id] example_id: EO_GIT:76 url_example: https://github.com/Planteome/plant-environment-ontology/issues/76 entity_type: BET:0000000 ! entity abbreviation: EuPathDB database: The Eukaryotic Pathogen Database generic_url: http://eupathdb.org url_syntax: http://eupathdb.org/gene/[example_id] example_id: EuPathDB:LtaP17.1490 url_example: http://eupathdb.org/gene/LtaP17.1490 entity_type: BET:0000000 ! gene abbreviation: Eurofung database: Eurofungbase community annotation generic_url: http://www.eurofung.net/option=com_content&task=section&id=3&Itemid=4 entity_type: BET:0000000 ! entity abbreviation: FB database: FlyBase synonym: FLYBASE generic_url: http://flybase.org/ local_id_syntax: FBgn[0-9]{7} url_syntax: http://flybase.org/reports/[example_id].html example_id: FB:FBgn0000024 url_example: http://flybase.org/reports/FBgn0000024.html entity_type: SO:0000704 ! gene local_id_syntax: FBrf[0-9]{7} url_syntax: http://flybase.org/reports/[example_id].htm example_id: FBrf0193169 url_example: https://flybase.org/reports/FBrf0193169.htm entity_type: BET:0000000 ! reference abbreviation: FBbt database: Drosophila gross anatomy generic_url: http://flybase.org/ local_id_syntax: [0-9]{8} url_syntax: http://flybase.org/cgi-bin/fbcvq.html?query=FBbt:[example_id] example_id: FBbt:00007002 url_example: http://flybase.org/cgi-bin/fbcvq.html?query=FBbt:00007002 entity_type: GO:0005623 ! cell local_id_syntax: [0-9]{8} url_syntax: http://flybase.org/cgi-bin/fbcvq.html?query=FBbt:[example_id] example_id: FBbt:10000000 url_example: http://flybase.org/cgi-bin/fbcvq.html?query=FBbt:10000000 entity_type: UBERON:0001062 ! anatomical entity abbreviation: FBdv database: Drosophila development generic_url: http://flybase.org/ local_id_syntax: [0-9]{8} url_syntax: http://flybase.org/cgi-bin/fbcvq.html?query=FBdv:[example_id] example_id: FBdv:00007012 url_example: http://flybase.org/cgi-bin/fbcvq.html?query=FBdv:00007012 entity_type: UBERON:0000105 ! life cycle stage abbreviation: FMA database: Foundational Model of Anatomy generic_url: http://sig.biostr.washington.edu/projects/fm/index.html example_id: FMA:61905 entity_type: BET:0000000 ! entity abbreviation: FYPO database: Fission Yeast Phenotype Ontology generic_url: http://www.pombase.org/ local_id_syntax: \d{7} example_id: FYPO:0000001 entity_type: BET:0000000 ! entity abbreviation: GenBank database: GenBank description: The NIH genetic sequence database, an annotated collection of all publicly available DNA sequences. synonym: GB generic_url: http://www.ncbi.nlm.nih.gov/Genbank/ local_id_syntax: ([A-Z]{2}[0-9]{6})|([A-Z]{1}[0-9]{5}) url_syntax: http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=[example_id] example_id: GB:AA816246 url_example: http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=AA816246 entity_type: SO:0000704 ! gene local_id_syntax: ([A-Z]{2}[0-9]{6})|([A-Z]{1}[0-9]{5}) url_syntax: http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=[example_id] example_id: GB:AA816246 url_example: http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=AA816246 entity_type: PR:000000001 ! protein abbreviation: Gene3D database: Domain Architecture Classification generic_url: http://gene3d.biochem.ucl.ac.uk/Gene3D/ url_syntax: http://gene3d.biochem.ucl.ac.uk/search?mode=family&sterm=[example_id] example_id: Gene3D:3.30.390.30 url_example: http://gene3d.biochem.ucl.ac.uk/search?mode=family&sterm=3.30.390.30 entity_type: BET:0000000 ! entity abbreviation: GeneDB database: GeneDB generic_url: http://www.genedb.org/gene/ local_id_syntax: ((LmjF|LinJ|LmxM)\.[0-9]{2}\.[0-9]{4})|(PF3D7_[0-9]{7})|(Tb[0-9]+\.[A-Za-z0-9]+\.[0-9]+)|(TcCLB\.[0-9]{6}\.[0-9]+) url_syntax: http://www.genedb.org/gene/[example_id] example_id: PF3D7_1467300 url_example: http://www.genedb.org/gene/PF3D7_1467300 entity_type: SO:0000704 ! gene abbreviation: Genesys-pgr database: Gene DB, Genesys generic_url: https://www.genesys-pgr.org/ url_syntax: https://www.genesys-pgr.org/acn/search?q=[example_id] example_id: Genesys-pgr:CM1015-16 url_example: https://www.genesys-pgr.org/acn/search?q=CM1015-16 entity_type: BET:0000000 ! entity abbreviation: GEO database: NCBI Gene Expression Omnibus generic_url: http://www.ncbi.nlm.nih.gov/geo/ url_syntax: http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=[example_id] example_id: GEO:GDS2223 url_example: http://www.ncbi.nlm.nih.gov/sites/GDSbrowser?acc=GDS2223 entity_type: BET:0000000 ! entity abbreviation: GO database: Gene Ontology Database generic_url: http://amigo.geneontology.org/ local_id_syntax: \d{7} url_syntax: http://amigo.geneontology.org/amigo/term/GO:[example_id] example_id: GO:0004352 url_example: http://amigo.geneontology.org/amigo/term/GO:0004352 entity_type: GO:0003674 ! molecular_function local_id_syntax: \d{7} url_syntax: http://amigo.geneontology.org/amigo/term/GO:[example_id] example_id: GO:0044767 url_example: http://amigo.geneontology.org/amigo/term/GO:0044767 entity_type: GO:0008150 ! biological_process local_id_syntax: \d{7} url_syntax: http://amigo.geneontology.org/amigo/term/GO:[example_id] example_id: GO:0005634 url_example: http://amigo.geneontology.org/amigo/term/GO:0005634 entity_type: GO:0005575 ! cellular_component local_id_syntax: \d{7} url_syntax: http://amigo.geneontology.org/amigo/term/GO:[example_id] example_id: GO:0044776 url_example: http://amigo.geneontology.org/amigo/term/GO:0044776 entity_type: GO:0032991 ! macromolecular complex abbreviation: GO_Central database: GO Central description: Manual annotation from PAINT curators into the UniProt Protein2GO curation tool. synonym: GO_CENTRAL generic_url: http://www.geneontology.org/GO.refgenome.shtml entity_type: BET:0000000 ! entity abbreviation: GO_Noctua database: GO Noctua description: Manual annotation derived from LEGO annotations generic_url: https://github.com/geneontology/noctua-models entity_type: BET:0000000 ! entity abbreviation: GO_REF database: Gene Ontology Database references generic_url: http://geneontology.org/gorefs local_id_syntax: \d{7} url_syntax: http://purl.obolibrary.org/obo/go/references/[example_id] example_id: 0000001 url_example: http://purl.obolibrary.org/obo/go/references/0000001 entity_type: BET:0000000 ! entity abbreviation: gomodel database: Gene Ontology Causal Activity Model (GO-CAM) generic_url: https://geneontology.org/go-cam url_syntax: https://model.geneontology.org/[example_id] example_id: gomodel:5ae3b0f600001522 url_example: https://model.geneontology.org/5ae3b0f600001522 entity_type: BET:0000000 ! model abbreviation: GOC database: Gene Ontology Consortium generic_url: http://www.geneontology.org/ entity_type: BET:0000000 ! entity abbreviation: GOC-OWL database: Gene Ontology Consortium - Logical inferences generic_url: http://www.geneontology.org/ entity_type: BET:0000000 ! entity abbreviation: GONUTS database: Gene Ontology Normal Usage Tracking System (GONUTS) description: Third party documentation for GO and community annotation system. generic_url: http://gowiki.tamu.edu url_syntax: https://gowiki.tamu.edu/wiki/index.php/[example_id] example_id: GONUTS:MOUSE:CD28 url_example: https://gowiki.tamu.edu/wiki/index.php/MOUSE:CD28 entity_type: BET:0000000 ! entity abbreviation: GOREL database: GO Extensions to OBO Relation Ontology Ontology description: Additional relations pending addition into RO generic_url: http://purl.obolibrary.org/obo/ro entity_type: BET:0000000 ! entity abbreviation: GR database: Gramene generic_url: http://www.gramene.org/ local_id_syntax: [A-Z][0-9][A-Z0-9]{3}[0-9] url_syntax: http://www.gramene.org/db/searches/browser?search_type=All&RGN=on&query=[example_id] example_id: GR:sd1 url_example: http://www.gramene.org/db/searches/browser?search_type=All&RGN=on&query=sd1 entity_type: PR:000000001 ! protein abbreviation: GR_Ensembl database: Gramene generic_url: http://www.gramene.org/ url_syntax: http://gramene.org/?idList=[example_id] example_id: GR_Ensembl:At1g10040 url_example: http://gramene.org/?idList=At1g10040 entity_type: BET:0000000 ! entity abbreviation: GR_GENE database: Gramene synonym: GR_gene generic_url: http://www.gramene.org/ url_syntax: http://www.gramene.org/db/genes/search_gene?acc=[example_id] example_id: GR_GENE:GR:0060198 url_example: http://www.gramene.org/db/genes/search_gene?acc=GR:0060198 entity_type: BET:0000000 ! entity abbreviation: GR_MUT database: A Comparative Mapping Resource for Grains generic_url: http://www.gramene.org/ url_syntax: http://www.gramene.org/db/genes/search_gene?acc=[example_id] example_id: GR_MUT:GR:0060198 url_example: http://www.gramene.org/db/genes/search_gene?acc=GR:0060198 entity_type: BET:0000000 ! entity abbreviation: GR_PROTEIN database: Gramene synonym: GR_protein generic_url: http://www.gramene.org/ local_id_syntax: [A-Z][0-9][A-Z0-9]{3}[0-9] url_syntax: http://www.gramene.org/db/protein/protein_search?acc=[example_id] example_id: GR_PROTEIN:Q6VSV0 url_example: http://www.gramene.org/db/protein/protein_search?acc=Q6VSV0 entity_type: PR:000000001 ! protein abbreviation: GR_QTL database: Gramene generic_url: http://www.gramene.org/ url_syntax: http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=[example_id] example_id: GR_QTL:CQU7 url_example: http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=CQU7 entity_type: BET:0000000 ! entity abbreviation: GR_REF database: Gramene generic_url: http://www.gramene.org/ url_syntax: http://www.gramene.org/db/literature/pub_search?ref_id=[example_id] example_id: GR_REF:659 url_example: http://www.gramene.org/db/literature/pub_search?ref_id=659 entity_type: BET:0000000 ! entity abbreviation: GRIN database: Germplasm Resources Information Network synonym: grin generic_url: https://www.ars-grin.gov/ url_syntax: https://npgsweb.ars-grin.gov/gringlobal/accessiondetail.aspx?id=[example_id] example_id: GRIN:1882640 url_example: https://npgsweb.ars-grin.gov/gringlobal/accessiondetail.aspx?id=1882640 entity_type: BET:0000000 ! germplasm abbreviation: GRINDesc database: Germplasm Resources Information Network generic_url: https://www.ars-grin.gov/ url_syntax: https://npgsweb.ars-grin.gov/gringlobal/descriptordetail.aspx?id=[example_id] example_id: GRINdesc:89033 url_example: https://npgsweb.ars-grin.gov/gringlobal/descriptordetail.aspx?id=89033 entity_type: BET:0000000 ! germplasm descriptors abbreviation: H-invDB database: H-invitational Database generic_url: http://www.h-invitational.jp/ entity_type: BET:0000000 ! entity abbreviation: H-invDB_cDNA database: H-invitational Database generic_url: http://www.h-invitational.jp/ url_syntax: http://www.h-invitational.jp/hinv/spsoup/transcript_view?acc_id=[example_id] example_id: H-invDB_cDNA:AK093148 url_example: http://www.h-invitational.jp/hinv/spsoup/transcript_view?acc_id=AK093149 entity_type: BET:0000000 ! entity abbreviation: H-invDB_locus database: H-invitational Database generic_url: http://www.h-invitational.jp/ url_syntax: http://www.h-invitational.jp/hinv/spsoup/locus_view?hix_id=[example_id] example_id: H-invDB_locus:HIX0014446 url_example: http://www.h-invitational.jp/hinv/spsoup/locus_view?hix_id=HIX0014446 entity_type: BET:0000000 ! entity abbreviation: HAMAP database: High-quality Automated and Manual Annotation of microbial Proteomes generic_url: http://hamap.expasy.org/ url_syntax: http://hamap.expasy.org/unirule/[example_id] example_id: HAMAP:MF_00031 url_example: http://hamap.expasy.org/unirule/MF_00131 entity_type: BET:0000000 ! entity abbreviation: HGNC database: HUGO Gene Nomenclature Committee generic_url: http://www.genenames.org/ local_id_syntax: [0-9]+ url_syntax: https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:[example_id] example_id: HGNC:29 url_example: https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:29 entity_type: SO:0000704 ! gene abbreviation: HPA database: Human Protein Atlas tissue profile information generic_url: http://www.proteinatlas.org/ url_syntax: http://www.proteinatlas.org/tissue_profile.php?antibody_id=[example_id] example_id: HPA:HPA000237 url_example: http://www.proteinatlas.org/tissue_profile.php?antibody_id=HPA000237 entity_type: BET:0000000 ! entity abbreviation: HPA_antibody database: Human Protein Atlas antibody information generic_url: http://www.proteinatlas.org/ url_syntax: http://www.proteinatlas.org/antibody_info.php?antibody_id=[example_id] example_id: HPA_antibody:HPA000237 url_example: http://www.proteinatlas.org/antibody_info.php?antibody_id=HPA000237 entity_type: BET:0000000 ! entity abbreviation: HUGO database: Human Genome Organisation generic_url: http://www.hugo-international.org/ entity_type: BET:0000000 ! entity abbreviation: IAO database: Information Artifact Ontology description: Ontology of information entities, including ontology metadata relations. generic_url: http://purl.obolibrary.org/obo/iao abbreviation: iBB database: iBeetleBase description: RNAi phenotypes for beetle (Tribolium) genes generic_url: https://ibeetle-base.uni-goettingen.de/ url_syntax: https://ibeetle-base.uni-goettingen.de/details|[example_id] example_id: TC006055 url_example: https://ibeetle-base.uni-goettingen.de/details/TC006055 entity_type: BET:0000000 ! entity abbreviation: IMG database: Integrated Microbial Genomes; JGI web site for genome annotation generic_url: http://img.jgi.doe.gov url_syntax: http://img.jgi.doe.gov/cgi-bin/pub/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=[example_id] example_id: IMG:640008772 url_example: http://img.jgi.doe.gov/cgi-bin/pub/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=640008772 entity_type: BET:0000000 ! entity abbreviation: IMGT_HLA database: IMGT/HLA human major histocompatibility complex sequence database generic_url: http://www.ebi.ac.uk/imgt/hla example_id: IMGT_HLA:HLA00031 entity_type: BET:0000000 ! entity abbreviation: IMGT_LIGM database: ImMunoGeneTics database covering immunoglobulins and T-cell receptors description: Database of immunoglobulins and T cell receptors from human and other vertebrates, with translation for fully annotated sequences. generic_url: http://www.imgt.org/ example_id: IMGT_LIGM:U03895 entity_type: BET:0000000 ! entity abbreviation: IntAct database: IntAct protein interaction database generic_url: https://www.ebi.ac.uk/intact/ local_id_syntax: EBI-[0-9]+ url_syntax: https://www.ebi.ac.uk/intact/pages/interactions/interactions.xhtml?query=[example_id] example_id: IntAct:EBI-17086 url_example: https://www.ebi.ac.uk/intact/pages/interactions/interactions.xhtml?query=EBI-17086 entity_type: BET:0000013 ! molecular interaction local_id_syntax: EBI-[0-9]+ url_syntax: http://www.ebi.ac.uk/complexportal/complex/[example_id] example_id: IntAct:EBI-10205244 url_example: http://www.ebi.ac.uk/complexportal/complex/EBI-10205244 entity_type: GO:0032991 ! protein-containing complex abbreviation: InterPro database: InterPro database of protein domains and motifs synonym: INTERPRO synonym: IPR generic_url: http://www.ebi.ac.uk/interpro/ local_id_syntax: IPR\d{6} url_syntax: http://www.ebi.ac.uk/interpro/entry/[example_id] example_id: InterPro:IPR000001 url_example: http://www.ebi.ac.uk/interpro/entry/IPR015421 entity_type: SO:0000839 ! polypeptide region abbreviation: iPTMnet database: iPTMnet protein post-translational modification database generic_url: https://research.bioinformatics.udel.edu/iptmnet/ url_syntax: https://research.bioinformatics.udel.edu/iptmnet/entry/[example_id]/ example_id: iPTM:P06493 url_example: https://research.bioinformatics.udel.edu/iptmnet/entry/P06493/ entity_type: BET:0000000 ! entity abbreviation: IRIC database: International Rice Research Institute generic_url: https://oryzasnp.org url_syntax: https://oryzasnp.org/_variety.zul?irisid=[example_id] example_id: IRIS_313-8922 url_example: https://oryzasnp.org/_variety.zul?irisid=IRIS_313-8922 entity_type: BET:0000000 ! entity abbreviation: IRGC database: International Rice Genebank Collection generic_url: https://www.genesys-pgr.org url_syntax: https://www.genesys-pgr.org/acn/search?q=IRGC+[example_id] example_id: IRGC:10012 url_example: https://www.genesys-pgr.org/acn/search?q=IRGC+10013 entity_type: BET:0000000 ! entity abbreviation: ISBN database: International Standard Book Number generic_url: https://www.worldcat.org url_syntax: https://www.worldcat.org/search?q=bn%3A[example_id] example_id: ISBN:0781702534 url_example: https://www.worldcat.org/search?q=bn%3A0781702534 entity_type: BET:0000000 ! entity abbreviation: ISSN database: International Standard Serial Number generic_url: http://www.issn.org/ example_id: ISSN:1234-1231 entity_type: BET:0000000 ! entity abbreviation: IUPHAR/BPS database: IUPHAR/BPS Guide to Pharmacology generic_url: https://www.guidetopharmacology.org/ entity_type: BET:0000000 ! entity abbreviation: IUPHAR_GPCR database: International Union of Pharmacology generic_url: http://www.iuphar.org/ url_syntax: https://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=[example_id] example_id: IUPHAR_GPCR:13 url_example: https://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=13 entity_type: BET:0000000 ! entity abbreviation: IUPHAR_RECEPTOR database: International Union of Pharmacology generic_url: http://www.iuphar.org/ url_syntax: https://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=[example_id] example_id: IUPHAR_RECEPTOR:56 url_example: https://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=56 entity_type: BET:0000000 ! entity abbreviation: Jaiswal_Lab database: Jaiswal_Lab generic_url: http://wiki.plantontology.org/index.php/PO_REF:00008 url_syntax: http://wiki.plantontology.org/index.php/PO_REF:00008 example_id: Jaiswal_Lab:gene00002 url_example: http://wiki.plantontology.org/index.php/PO_REF:00008 entity_type: BET:0000000 ! entity abbreviation: TIGRFAMS database: TIGRFAMs HMM collection at the J. Craig Venter Institute synonym: TIGR_TIGRFAMS generic_url: http://tigrfams.jcvi.org/cgi-bin/index.cgi local_id_syntax: TIGR[0-9]{5} url_syntax: http://tigrfams.jcvi.org/cgi-bin/HmmReportPage.cgi?acc=[example_id] example_id: TIGRFAMS:TIGR00254 url_example: http://tigrfams.jcvi.org/cgi-bin/HmmReportPage.cgi?acc=TIGR00254 entity_type: SO:0000839 ! polypeptide region abbreviation: JSTOR database: Digital archive of scholarly articles generic_url: https://www.jstor.org/ url_syntax: https://www.jstor.org/stable/[example_id] example_id: JSTOR:3093870 url_example: https://www.jstor.org/stable/3093870 entity_type: BET:0000000 ! entity abbreviation: KEGG database: Kyoto Encyclopedia of Genes and Genomes generic_url: http://www.genome.ad.jp/kegg/ entity_type: BET:0000000 ! entity abbreviation: KEGG_ENZYME database: KEGG Enzyme Database generic_url: http://www.genome.jp/dbget-bin/www_bfind?enzyme local_id_syntax: \d(\.\d{1,2}){2}\.\d{1,3} url_syntax: http://www.genome.jp/dbget-bin/www_bget?ec:[example_id] example_id: KEGG_ENZYME:2.1.1.4 url_example: http://www.genome.jp/dbget-bin/www_bget?ec:2.1.1.4 entity_type: BET:0000000 ! entity abbreviation: KEGG_LIGAND database: KEGG LIGAND Database generic_url: http://www.genome.ad.jp/kegg/docs/upd_ligand.html local_id_syntax: C\d{5} url_syntax: http://www.genome.jp/dbget-bin/www_bget?cpd:[example_id] example_id: KEGG_LIGAND:C00577 url_example: http://www.genome.jp/dbget-bin/www_bget?cpd:C00577 entity_type: CHEBI:24431 ! chemical entity abbreviation: KEGG_PATHWAY database: KEGG Pathways Database generic_url: http://www.genome.jp/kegg/pathway.html url_syntax: http://www.genome.jp/dbget-bin/www_bget?path:[example_id] example_id: KEGG_PATHWAY:ot00020 url_example: http://www.genome.jp/dbget-bin/www_bget?path:ot00020 entity_type: BET:0000000 ! entity abbreviation: KEGG_REACTION database: KEGG Reaction Database generic_url: http://www.genome.jp/kegg/reaction/ local_id_syntax: R\d+ url_syntax: http://www.genome.jp/dbget-bin/www_bget?rn:[example_id] example_id: KEGG:R02328 url_example: http://www.genome.jp/dbget-bin/www_bget?rn:R02328 entity_type: BET:0000000 ! entity abbreviation: LIFEdb database: LifeDB description: LifeDB is a database for information on protein localization, interaction, functional assays and expression. generic_url: http://www.lifedb.de/ url_syntax: https://www.dkfz.de/en/mga/Groups/LIFEdb-Database.html?ID=[example_id] example_id: LIFEdb:DKFZp564O1716 url_example: https://www.dkfz.de/en/mga/Groups/LIFEdb-Database.html?ID=DKFZp564O1716 entity_type: BET:0000000 ! entity abbreviation: MA database: Adult Mouse Anatomical Dictionary description: Adult Mouse Anatomical Dictionary; part of Gene Expression Database generic_url: http://www.informatics.jax.org/ url_syntax: http://www.informatics.jax.org/searches/AMA.cgi?id=MA:[example_id] example_id: MA:0000003 url_example: http://www.informatics.jax.org/searches/AMA.cgi?id=MA:0000003 entity_type: BET:0000000 ! entity abbreviation: MACSC_REF database: Maize Genetics and Genomics Database generic_url: http://www.maizegdb.org/ url_syntax: http://www.maizegdb.org/cgi-bin/displaytraitrecord.cgi?id=[example_id] example_id: MACSC_REF:78112 url_example: http://www.maizegdb.org/cgi-bin/displaytraitrecord.cgi?id=78112 entity_type: BET:0000000 ! entity abbreviation: MaizeGDB database: MaizeGDB generic_url: https://www.maizegdb.org/ url_syntax: https://maizegdb.org/gene_center/gene/[example_id] example_id: MaizeGDB:12098 url_example: https://maizegdb.org/gene_center/gene/12098 entity_type: BET:0000000 ! entity abbreviation: MaizeGDB_Locus database: MaizeGDB generic_url: https://www.maizegdb.org/ local_id_syntax: [A-Za-z][A-Za-z0-9]* url_syntax: https://www.maizegdb.org/gene_center/gene/[example_id] example_id: MaizeGDB_Locus:25011 url_example: https://www.maizegdb.org/gene_center/gene/25011 entity_type: SO:0000704 ! gene abbreviation: MaizeGDB_QTL database: Maize Genetics and Genomics Database generic_url: https://www.maizegdb.org/ url_syntax: https://www.maizegdb.org/data_center/trait?id=[example_id] example_id: MaizeGDB_QTL:78112 url_example: https://www.maizegdb.org/data_center/trait?id=78112 entity_type: BET:0000000 ! entity abbreviation: MaizeGDB_REF database: Maize Genetics and Genomics Database generic_url: https://www.maizegdb.org/ url_syntax: http://maizegdb.org/data_center/reference?id=[example_id] example_id: MaizeGDB_REF:9021423 url_example: http://maizegdb.org/data_center/reference?id=9021423 entity_type: BET:0000000 ! entity abbreviation: MaizeGDB_stock database: Maize Genetics and Genomics Database generic_url: https://www.maizegdb.org/ url_syntax: https://maizegdb.org/data_center/stock?id=[example_id] example_id: MaizeGDB_stock:282110 url_example: https://maizegdb.org/data_center/stock?id=282110 entity_type: BET:0000000 ! entity abbreviation: MEDLINE database: Medline literature database generic_url: http://www.nlm.nih.gov/databases/databases_medline.html example_id: MEDLINE:20572430 entity_type: BET:0000000 ! entity abbreviation: MEROPS database: MEROPS peptidase database generic_url: https://www.ebi.ac.uk/merops/ local_id_syntax: ^[SCTAGMNU]\d{2}\.([AB]\d{2}|\d{3}|[A-Z]{3})$ url_syntax: https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=[example_id] example_id: MEROPS:A08.001 url_example: https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=A08.001 entity_type: PR:000000001 ! protein abbreviation: MEROPS_fam database: MEROPS peptidase database generic_url: https://www.ebi.ac.uk/merops local_id_syntax: ^[SCTAGMNU]\d+$ url_syntax: https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=[example_id] example_id: MEROPS_fam:M18 url_example: https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=M18 entity_type: BET:0000000 ! entity local_id_syntax: ^[SCTAGMNU]\d+$ url_syntax: https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=[example_id] example_id: MEROPS_fam:M18 url_example: https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=M18 entity_type: NCIT:C20130 ! protein family abbreviation: MeSH database: Medical Subject Headings synonym: MESH synonym: MSH generic_url: https://meshb.nlm.nih.gov url_syntax: http://id.nlm.nih.gov/mesh/[example_id] example_id: MeSH:D017209 url_example: http://id.nlm.nih.gov/mesh/D017209 entity_type: BET:0000000 ! entity abbreviation: MetaCyc database: Metabolic Encyclopedia of metabolic and other pathways synonym: METACYC generic_url: https://metacyc.org/ local_id_syntax: ^[A-Za-z0-9+_.%-:]+$ url_syntax: https://biocyc.org/META/NEW-IMAGE?type=NIL&object=[example_id] example_id: MetaCyc:GLUTDEG-PWY url_example: https://biocyc.org/META/NEW-IMAGE?type=NIL&object=GLUTDEG-PWY entity_type: BET:0000000 ! entity abbreviation: MGCSC_GENETIC_STOCKS database: Maize Genetics and Genomics Database generic_url: http://www.maizegdb.org url_syntax: http://www.maizegdb.org/cgi-bin/displaystockrecord.cgi?id=[example_id] example_id: MGCSC_GENETIC_STOCKS:78112 url_example: http://www.maizegdb.org/cgi-bin/displaytraitrecord.cgi?id=78112 entity_type: BET:0000000 ! entity abbreviation: MGD database: Mouse Genome Database generic_url: http://www.informatics.jax.org/ example_id: MGD:Adcy9 entity_type: BET:0000000 ! entity abbreviation: MGI database: Mouse Genome Informatics generic_url: http://www.informatics.jax.org/ local_id_syntax: MGI:[0-9]{5,} url_syntax: http://www.informatics.jax.org/accession/[example_id] example_id: MGI:MGI:1345277 url_example: http://www.informatics.jax.org/accession/MGI:1345277 entity_type: SO:0000704 ! gene local_id_syntax: MGI:[0-9]{5,} url_syntax: http://www.informatics.jax.org/accession/[example_id] example_id: MGI:MGI:3590672 url_example: http://www.informatics.jax.org/accession/MGI:3590672 entity_type: VariO:0001 ! variation abbreviation: MIPS_funcat database: MIPS Functional Catalogue generic_url: http://mips.gsf.de/proj/funcatDB/ url_syntax: http://mips.gsf.de/cgi-bin/proj/funcatDB/search_advanced.pl?action=2&wert=[example_id] example_id: MIPS_funcat:11.02 url_example: http://mips.gsf.de/cgi-bin/proj/funcatDB/search_advanced.pl?action=2&wert=11.02 entity_type: BET:0000000 ! entity abbreviation: MITRE database: The MITRE Corporation generic_url: http://www.mitre.org/ entity_type: BET:0000000 ! entity abbreviation: ModBase database: ModBase comprehensive Database of Comparative Protein Structure Models generic_url: http://modbase.compbio.ucsf.edu/ url_syntax: http://salilab.org/modbase/searchbyid?databaseID=[example_id] example_id: ModBase:P10815 url_example: http://salilab.org/modbase/searchbyid?databaseID=P04848 entity_type: BET:0000000 ! entity abbreviation: NASC_code database: Nottingham Arabidopsis Stock Centre Seeds Database synonym: NASC generic_url: http://arabidopsis.info url_syntax: http://seeds.nottingham.ac.uk/NASC/stockatidb.lasso?code=[example_id] example_id: NASC_code:N3371 url_example: http://seeds.nottingham.ac.uk/NASC/stockatidb.lasso?code=N3371 entity_type: BET:0000000 ! entity abbreviation: NC-IUBMB database: Nomenclature Committee of the International Union of Biochemistry and Molecular Biology generic_url: http://www.chem.qmw.ac.uk/iubmb/ entity_type: BET:0000000 ! entity abbreviation: NCBI database: National Center for Biotechnology Information generic_url: http://www.ncbi.nlm.nih.gov/ entity_type: BET:0000000 ! entity abbreviation: NCBIGene database: NCBI Gene synonym: GeneID synonym: LocusID synonym: NCBI_Gene generic_url: http://www.ncbi.nlm.nih.gov/ local_id_syntax: \d+ url_syntax: https://www.ncbi.nlm.nih.gov/gene/[example_id] example_id: NCBI_Gene:4771 url_example: https://www.ncbi.nlm.nih.gov/gene/4771 entity_type: SO:0000704 ! gene abbreviation: NCBI_gi database: NCBI databases generic_url: http://www.ncbi.nlm.nih.gov/ local_id_syntax: [0-9]{5,} url_syntax: http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=[example_id] example_id: NCBI_gi:113194944 url_example: http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=113194944 entity_type: SO:0000704 ! gene abbreviation: NCBI_GP database: NCBI GenPept generic_url: http://www.ncbi.nlm.nih.gov/ local_id_syntax: [A-Z]{3}[0-9]{5}(\.[0-9]+)? url_syntax: https://www.ncbi.nlm.nih.gov/protein/[example_id] example_id: NCBI_GP:EAL72968 url_example: https://www.ncbi.nlm.nih.gov/protein/EAL72968 entity_type: PR:000000001 ! protein abbreviation: NCBI_locus_tag database: NCBI locus tag generic_url: http://www.ncbi.nlm.nih.gov/ example_id: NCBI_locus_tag:CTN_0547 entity_type: BET:0000000 ! entity abbreviation: NCBI_NP database: NCBI Protein generic_url: https://www.ncbi.nlm.nih.gov/protein abbreviation: NIF_Subcellular database: Neuroscience Information Framework standard ontology, subcellular hierarchy generic_url: http://www.neurolex.org/wiki url_syntax: http://www.neurolex.org/wiki/[example_id] example_id: NIF_Subcellular:sao1186862860 url_example: http://www.neurolex.org/wiki/sao1770195789 entity_type: BET:0000000 ! entity abbreviation: NTNU_SB database: Norwegian University of Science and Technology, Systems Biology team generic_url: http://www.ntnu.edu/nt/systemsbiology entity_type: BET:0000000 ! entity abbreviation: OBI database: Ontology for Biomedical Investigations generic_url: http://obi-ontology.org/ local_id_syntax: \d{7} example_id: OBI:0000038 url_example: http://purl.obolibrary.org/obo/OBI_0000038 entity_type: BET:0000000 ! entity abbreviation: OBO_SF_PO database: Source Forge OBO Plant Ontology (PO) term request tracker generic_url: http://sourceforge.net/tracker/?func=browse&group_id=76834&atid=835555 url_syntax: https://sourceforge.net/tracker/index.php?func=detail&aid=[example_id]&group_id=76834&atid=835555 example_id: OBO_SF_PO:3184921 url_example: https://sourceforge.net/tracker/index.php?func=detail&aid=3184921&group_id=76834&atid=835555 entity_type: BET:0000000 ! entity abbreviation: OBO_SF2_PO database: Source Forge OBO Plant Ontology (PO) term request tracker generic_url: https://sourceforge.net/p/obo/plant-ontology-po-term-requests/ url_syntax: http://sourceforge.net/p/obo/plant-ontology-po-term-requests/[example_id] example_id: OBO_SF2_PO:500 url_example: http://sourceforge.net/p/obo/plant-ontology-po-term-requests/500 entity_type: BET:0000000 ! entity abbreviation: OBO_SF2_PECO database: Source Forge OBO plant-experimental-conditions-ontology (PECO) term request tracker generic_url: https://sourceforge.net/p/obo/plant-environment-ontology-eo/ url_syntax: https://sourceforge.net/p/obo/plant-environment-ontology-eo/[example_id] example_id: OBO_SF2_PECO:89 url_example: https://sourceforge.net/p/obo/plant-environment-ontology-eo/89/ entity_type: BET:0000000 ! entity abbreviation: OMIM database: Mendelian Inheritance in Man synonym: MIM generic_url: https://omim.org/ url_syntax: https://omim.org/entry/[example_id] example_id: OMIM:190198 url_example: https://omim.org/entry/190198 entity_type: BET:0000000 ! entity abbreviation: OMSSA database: Open Mass Spectrometry Search Algorithm generic_url: http://pubchem.ncbi.nlm.nih.gov/omssa/ entity_type: BET:0000000 ! entity abbreviation: PANTHER database: Protein ANalysis THrough Evolutionary Relationships Classification System generic_url: http://www.pantherdb.org/ local_id_syntax: PTN[0-9]{9}|PTHR[0-9]{5}|PTHR[0-9]{5}:SF[0-9]+ url_syntax: http://www.pantherdb.org/panther/lookupId.jsp?id=[example_id] example_id: PANTHER:PTHR11455 url_example: http://www.pantherdb.org/panther/lookupId.jsp?id=PTHR10000 entity_type: NCIT:C20130 ! protein family abbreviation: orcid database: Open Researcher and Contributor description: ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. generic_url: https://orcid.org/ local_id_syntax: ^\d{4}-\d{4}-\d{4}-\d{3}(\d|X)$ url_syntax: https://orcid.org/[example_id] example_id: orcid:0000-0003-4423-4370 url_example: https://orcid.org/0000-0003-4423-4370 entity_type: BET:0000000 ! entity abbreviation: ParkinsonsUK-UCL database: Parkinsons Disease Gene Ontology Initiative generic_url: https://www.ucl.ac.uk/cardiovascular/research/pre-clinical-and-fundamental-science/functional-gene-annotation/neurological-gene entity_type: BET:0000000 ! entity abbreviation: PATO database: Phenotypic quality ontology generic_url: http://www.obofoundry.org/ontology/pato.html example_id: PATO:0001420 url_example: http://purl.obolibrary.org/obo/PATO_0001420 entity_type: BET:0000000 ! entity abbreviation: PATRIC database: PathoSystems Resource Integration Center description: PathoSystems Resource Integration Center at the Virginia Bioinformatics Institute generic_url: https://www.patricbrc.org url_syntax: https://www.patricbrc.org/view/Feature/[example_id] example_id: PATRIC:fig%7C83332.12.peg.11 url_example: https://www.patricbrc.org/view/Feature/fig%7C83332.12.peg.1 entity_type: BET:0000000 ! entity abbreviation: PDB database: Protein Data Bank generic_url: https://www.rcsb.org/pdb/ local_id_syntax: [A-Za-z0-9]{4} url_syntax: https://www.rcsb.org/structure/[example_id] example_id: PDB:1A4U url_example: https://www.rcsb.org/structure/1A4U entity_type: PR:000000001 ! protein abbreviation: PECO_GIT database: GitHub Issue Tracker for PECO generic_url: https://github.com/Planteome/plant-experimental-conditions-ontology url_syntax: https://github.com/Planteome/plant-environment-ontology/issues/[example_id] example_id: PECO_GIT:76 url_example: https://github.com/Planteome/plant-experimental-conditions-ontology/issues/76 entity_type: BET:0000000 ! entity abbreviation: Pfam database: Pfam database of protein families description: Pfam is a collection of protein families represented by sequence alignments and hidden Markov models (HMMs) generic_url: https://www.ebi.ac.uk/interpro/entry/pfam local_id_syntax: PF[0-9]{5} url_syntax: https://www.ebi.ac.uk/interpro/entry/pfam/[example_id] example_id: Pfam:PF00046 url_example: https://www.ebi.ac.uk/interpro/entry/pfam/PF00069 entity_type: SO:0000110 ! sequence feature local_id_syntax: PF[0-9]{5} url_syntax: https://www.ebi.ac.uk/interpro/entry/pfam/[example_id] example_id: Pfam:PF00046 url_example: https://www.ebi.ac.uk/interpro/entry/pfam/PF00069 entity_type: SO:0000839 ! polypeptide region abbreviation: PharmGKB database: Pharmacogenetics and Pharmacogenomics Knowledge Base generic_url: https://www.pharmgkb.org url_syntax: https://www.pharmgkb.org/do/serve?objId=[example_id] example_id: PharmGKB:PA267 url_example: https://www.pharmgkb.org/do/serve?objId=PA267 entity_type: BET:0000000 ! entity abbreviation: PhenoScape database: PhenoScape Knowledgebase generic_url: http://phenoscape.org/ entity_type: BET:0000000 ! entity abbreviation: PHI-base database: Pathogen-Host Interactions Database description: PHI-base catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, Oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts. generic_url: http://www.phi-base.org/ local_id_syntax: PHI:[0-9]+ url_syntax: http://www.phi-base.org/searchFacet.htm?queryTerm=PHI:[example_id] example_id: PHI:3 url_example: http://www.phi-base.org/searchFacet.htm?queryTerm=PHI:3 entity_type: BET:0000000 ! entity abbreviation: PIR database: Protein Information Resource generic_url: https://proteininformationresource.org/ local_id_syntax: [A-Z]{1}[0-9]{5} url_syntax: https://proteininformationresource.org/cgi-bin/nbrfget?uid=[example_id] example_id: PIR:I49499 url_example: https://proteininformationresource.org/cgi-bin/nbrfget?uid=I49499 entity_type: PR:000000001 ! protein abbreviation: PIRSF database: PIR Superfamily Classification System generic_url: http://pir.georgetown.edu/pirsf/ url_syntax: http://pir.georgetown.edu/cgi-bin/ipcSF?id=[example_id] example_id: PIRSF:SF002327 url_example: http://pir.georgetown.edu/cgi-bin/ipcSF?id=SF002327 entity_type: BET:0000000 ! entity abbreviation: PlantSystematics_image_archive database: PlantSystematics.org generic_url: http://plantsystematics.org url_syntax: http://www.plantsystematics.org/imagebyid_[example_id].html example_id: PlantSystematics_image_archivee:37658 url_example: http://www.plantsystematics.org/imagebyid_37658.html entity_type: BET:0000000 ! entity abbreviation: PMCID database: Pubmed Central synonym: PMC generic_url: https://www.ncbi.nlm.nih.gov/pmc/ url_syntax: https://www.ncbi.nlm.nih.gov/pmc/articles/[example_id] example_id: PMCID:PMC201377 url_example: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC201377/ entity_type: BET:0000000 ! entity abbreviation: PMID database: PubMed synonym: PUBMED generic_url: https://www.ncbi.nlm.nih.gov/pubmed local_id_syntax: [0-9]+ url_syntax: http://www.ncbi.nlm.nih.gov/pubmed/[example_id] example_id: PMID:31931324 url_example: https://www.ncbi.nlm.nih.gov/pubmed/31931324 entity_type: BET:0000000 ! entity abbreviation: PO database: Plant Ontology generic_url: http://www.planteome.org/ local_id_syntax: [0-9]{7} url_syntax: http://browser.planteome.org/amigo/term/PO:[example_id] example_id: PO:0009004 url_example: http://browser.planteome.org/amigo/term/PO:0009004 entity_type: PO:0025131 ! plant anatomical entity local_id_syntax: [0-9]{7} url_syntax: http://browser.planteome.org/amigo/term/PO:[example_id] example_id: PO:0025131 url_example: http://browser.planteome.org/amigo/term/PO:0025131 entity_type: PO:0009012 ! plant structure development stage abbreviation: PO_GIT database: GitHub Issue Tracker for PO generic_url: https://github.com/Planteome/plant-ontology url_syntax: https://github.com/Planteome/plant-ontology/issues/[example_id] example_id: PO_GIT:626 url_example: https://github.com/Planteome/plant-ontology/issues/626 entity_type: BET:0000000 ! entity abbreviation: PO_REF database: Plant Ontology custom references generic_url: http://planteome.org/po_ref url_syntax: http://planteome.org/po_ref/[example_id] example_id: PO_REF:00001 url_example: http://planteome.org/po_ref/00001 entity_type: BET:0000000 ! entity abbreviation: PlasmoDB database: PlasmoDB generic_url: https://plasmodb.org local_id_syntax: PF3D7_[0-9]{7} url_syntax: https://plasmodb.org/plasmo/app/record/gene/[example_id] example_id: PF3D7_1467300 url_example: https://plasmodb.org/plasmo/app/record/gene/PF3D7_1467300 entity_type: SO:0000704 ! gene abbreviation: POC database: Plant Ontology Consortium generic_url: http://www.plantontology.org/ entity_type: BET:0000000 ! entity abbreviation: PomBase database: PomBase generic_url: https://www.pombase.org/ local_id_syntax: S\w+(\.)?\w+(\.)? url_syntax: https://www.pombase.org/gene/[example_id] example_id: PomBase:SPBC11B10.09 url_example: https://www.pombase.org/gene/SPBC11B10.09 entity_type: SO:0000704 ! gene local_id_syntax: S\w+(\.)?\w+(\.)?\d+ url_syntax: https://www.pombase.org/gene/[example_id] example_id: PomBase:SPCC548.03c.2 url_example: https://www.pombase.org/gene/SPCC548.03c.2 entity_type: SO:0000673 ! transcript abbreviation: Pompep database: Schizosaccharomyces pombe protein data generic_url: https://www.pombase.org/downloads/protein-datasets example_id: Pompep:SPAC890.04C entity_type: BET:0000000 ! entity abbreviation: PPI database: Pseudomonas syringae community annotation project generic_url: http://www.pseudomonas-syringae.org/ entity_type: BET:0000000 ! entity abbreviation: PR database: Protein Ontology synonym: PRO generic_url: https://proconsortium.org/ local_id_syntax: ([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}){1}(-[0-9]+){0,1}|[0-9]{9} url_syntax: https://purl.obolibrary.org/obo/PR_[example_id] example_id: PR:Q64445 url_example: https://purl.obolibrary.org/obo/PR_000060258 entity_type: PR:000000001 ! protein abbreviation: PRINTS database: PRINTS compendium of protein fingerprints generic_url: http://www.bioinf.manchester.ac.uk/dbbrowser/PRINTS/ local_id_syntax: PR[0-9]{5} url_syntax: http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false®expr=off&prints_accn=[example_id] example_id: PRINTS:PR00025 url_example: http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false®expr=off&prints_accn=PR00025 entity_type: SO:0000839 ! polypeptide region abbreviation: Prosite database: Prosite database of protein families and domains generic_url: https://prosite.expasy.org/ local_id_syntax: PDOC[0-9]{5} url_syntax: https://prosite.expasy.org/[example_id] example_id: PDOC00314 url_example: https://prosite.expasy.org/PDOC00314 entity_type: SO:0000839 ! polypeptide region abbreviation: protein_id database: DDBJ / ENA / GenBank description: protein identifier shared by DDBJ/EMBL-bank/GenBank nucleotide sequence databases generic_url: http://www.ddbj.nig.ac.jp/ generic_url: http://www.ebi.ac.uk/ena/ generic_url: http://www.ncbi.nlm.nih.gov/Genbank/ local_id_syntax: [A-Z]{3}[0-9]{5}(\.[0-9]+)? example_id: protein_id:CAA71991 entity_type: PR:000000001 ! protein abbreviation: PseudoCAP database: Pseudomonas Genome Project generic_url: http://www.pseudomonas.com url_syntax: http://www.pseudomonas.com/feature/show?locus_tag=[example_id] example_id: PseudoCAP:PA4756 url_example: http://www.pseudomonas.com/feature/show?locus_tag=PA4756 entity_type: BET:0000000 ! entity abbreviation: PSO_GIT database: GitHub Issue Tracker for PSO generic_url: https://github.com/Planteome/plant-stress-ontology url_syntax: https://github.com/Planteome/plant-stress-ontology/issues/[example_id] example_id: PSO_GIT:169 url_example: https://github.com/Planteome/plant-stress-ontology/issues/169 entity_type: BET:0000000 ! entity abbreviation: PSI-MI database: Proteomic Standard Initiative for Molecular Interaction synonym: MI generic_url: http://www.psidev.info/ url_syntax: http://purl.obolibrary.org/obo/ example_id: MI_0018 url_example: http://purl.obolibrary.org/obo/MI_0018 entity_type: BET:0000000 ! entity abbreviation: PSI-MOD database: Proteomics Standards Initiative protein modification ontology synonym: MOD generic_url: http://www.psidev.info/groups/protein-modifications url_syntax: http://purl.obolibrary.org/obo/[example_id] example_id: MOD_00219 url_example: http://purl.obolibrary.org/obo/MOD_00219 entity_type: BET:0000000 ! entity abbreviation: PSORT database: PSORT protein subcellular localization databases and prediction tools for bacteria generic_url: https://www.psort.org/ entity_type: BET:0000000 ! entity abbreviation: PubChem_BioAssay database: NCBI PubChem database of bioassay records generic_url: https://pubchem.ncbi.nlm.nih.gov url_syntax: https://pubchem.ncbi.nlm.nih.gov/bioassay/[example_id] example_id: PubChem_BioAssay:177 url_example: https://pubchem.ncbi.nlm.nih.gov/bioassay/177 entity_type: BET:0000000 ! entity abbreviation: PubChem_Compound database: NCBI PubChem database of chemical structures generic_url: https://pubchem.ncbi.nlm.nih.gov local_id_syntax: [0-9]+ url_syntax: https://pubchem.ncbi.nlm.nih.gov/compound/[example_id] example_id: PubChem_Compound:159296 url_example: https://pubchem.ncbi.nlm.nih.gov/compound/159296 entity_type: CHEBI:24431 ! chemical entity abbreviation: PubChem_Substance database: NCBI PubChem database of chemical substances generic_url: https://pubchem.ncbi.nlm.nih.gov local_id_syntax: [0-9]{4,} url_syntax: https://pubchem.ncbi.nlm.nih.gov/substance/[example_id] example_id: PubChem_Substance:4594 url_example: https://pubchem.ncbi.nlm.nih.gov/substance/4594 entity_type: CHEBI:24431 ! chemical entity abbreviation: RAP-DB database: Rice annotation Project database generic_url: https://rapdb.dna.affrc.go.jp url_syntax: https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=[example_id] example_id: RAP-DB:Os01t0100600-01 url_example: https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=Os01t0100600-01 entity_type: BET:0000000 ! entity abbreviation: Reactome database: Reactome - a curated knowledgebase of biological pathways synonym: REACTOME synonym: REAC generic_url: https://www.reactome.org/ local_id_syntax: R-[A-Z]{3}-[0-9]+(-[0-9]+){0,1}(\.[0-9]+){0,1} url_syntax: https://www.reactome.org/content/detail/[example_id] example_id: Reactome:R-HSA-109582 url_example: https://www.reactome.org/content/detail/R-HSA-109582 entity_type: BET:0000000 ! entity abbreviation: REBASE database: REBASE restriction enzyme database generic_url: http://rebase.neb.com/rebase/rebase.html url_syntax: http://rebase.neb.com/rebase/enz/[example_id].html example_id: REBASE:EcoRI url_example: http://rebase.neb.com/rebase/enz/EcoRI.html entity_type: BET:0000000 ! entity abbreviation: RefGenome database: GO Reference Genomes synonym: REFGENOME generic_url: http://www.geneontology.org/GO.refgenome.shtml entity_type: BET:0000000 ! entity abbreviation: RefSeq database: RefSeq generic_url: http://www.ncbi.nlm.nih.gov/RefSeq/ local_id_syntax: (NC|AC|NG|NT|NW|NZ|NM|NR|XM|XR|NP|AP|XP|YP|ZP)_[0-9]+(\.[0-9]+){0,1} url_syntax: http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=[example_id] example_id: RefSeq:XP_001068954 url_example: http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=XP_001068954 entity_type: SO:0000704 ! gene local_id_syntax: (NC|AC|NG|NT|NW|NZ|NM|NR|XM|XR|NP|AP|XP|YP|ZP)_[0-9]+(\.[0-9]+){0,1} url_syntax: https://www.ncbi.nlm.nih.gov/protein/[example_id] example_id: RefSeq:XP_001068954 url_example: https://www.ncbi.nlm.nih.gov/protein/NP_001121125 entity_type: PR:000000001 ! protein abbreviation: RESID database: RESID Database of Protein Modifications generic_url: https://proteininformationresource.org/resid/resid.shtml local_id_syntax: AA[0-9]{4} url_syntax: https://proteininformationresource.org/cgi-bin/resid?id=[example_id] example_id: RESID:AA0062 url_example: https://proteininformationresource.org/cgi-bin/resid?id=AA0062 entity_type: BET:0000000 ! entity abbreviation: Rfam database: Rfam database of RNA families generic_url: https://rfam.org url_syntax: https://rfam.org/family/[example_id] example_id: Rfam:RF00012 url_example: https://rfam.org/family/RF00012 entity_type: BET:0000000 ! entity abbreviation: RGD database: Rat Genome Database synonym: RAD synonym: RGDID generic_url: https://rgd.mcw.edu/ local_id_syntax: [0-9]{4,7} url_syntax: https://rgd.mcw.edu/rgdweb/search/search.html?term=[example_id] example_id: RGD:2004 url_example: https://rgd.mcw.edu/rgdweb/search/search.html?term=2004 entity_type: SO:0000704 ! gene abbreviation: RHEA database: Rhea, the Annotated Reactions Database description: Rhea is a manually annotated database of chemical reactions. All data in Rhea is freely accessible and available for anyone to use. generic_url: https://www.rhea-db.org url_syntax: https://www.rhea-db.org/rhea/[example_id] example_id: RHEA:25811 url_example: https://www.rhea-db.org/rhea/25811 entity_type: BET:0000000 ! entity abbreviation: RiceSES database: Rice Knowledge Bank generic_url: http://www.ncbi.nlm.nih.gov/PubMed/ url_syntax: http://www.knowledgebank.irri.org/extension/crop-damage-diseases/[example_id].html example_id: RiceSES:bakanae-diseases-bak url_example: http://www.knowledgebank.irri.org/extension/crop-damage-diseases/bakanae-diseases-bak.html entity_type: BET:0000000 ! entity abbreviation: RNAcentral database: RNAcentral description: An international database of ncRNA sequences generic_url: https://rnacentral.org local_id_syntax: URS[0-9A-F]{10}([_\/][0-9]+){0,1} url_syntax: https://rnacentral.org/rna/[example_id] example_id: RNAcentral:URS000047C79B_9606 url_example: https://rnacentral.org/rna/URS000047C79B_9606 entity_type: CHEBI:33697 ! ribonucleic acid abbreviation: RNAmods database: RNA Modification Database synonym: RNAMDB generic_url: https://mods.rna.albany.edu/ url_syntax: https://mods.rna.albany.edu/mods/modifications/view/[example_id] example_id: RNAmods:20 url_example: https://mods.rna.albany.edu/mods/modifications/view/20 entity_type: BET:0000000 ! entity abbreviation: RO database: OBO Relation Ontology Ontology description: A collection of relations used across OBO ontologies generic_url: http://purl.obolibrary.org/obo/ro url_syntax: http://purl.obolibrary.org/obo/RO_[example_id] example_id: RO:0002211 url_example: http://purl.obolibrary.org/obo/RO_0002211 entity_type: BET:0000000 ! entity abbreviation: SABIO-RK database: SABIO Reaction Kinetics description: The SABIO-RK (System for the Analysis of Biochemical Pathways - Reaction Kinetics) is a web-based application based on the SABIO relational database that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. generic_url: http://sabio.villa-bosch.de/ url_syntax: http://sabio.villa-bosch.de/reacdetails.jsp?reactid=[example_id] example_id: SABIO-RK:1858 url_example: http://sabio.villa-bosch.de/reacdetails.jsp?reactid=1858 entity_type: BET:0000000 ! entity abbreviation: Sanger database: Wellcome Trust Sanger Institute generic_url: http://www.sanger.ac.uk/ entity_type: BET:0000000 ! entity abbreviation: SEED database: The SEED; description: Project to annotate the first 1000 sequenced genomes, develop detailed metabolic reconstructions, and construct the corresponding stoichiometric matrices generic_url: http://www.theseed.org url_syntax: http://www.theseed.org/linkin.cgi?id=[example_id] example_id: SEED:fig|83331.1.peg.1 url_example: http://www.theseed.org/linkin.cgi?id=fig|83331.1.peg.1 entity_type: BET:0000000 ! entity abbreviation: SGD database: Saccharomyces Genome Database synonym: SGDID generic_url: http://www.yeastgenome.org/ local_id_syntax: S[0-9]{9} url_syntax: https://www.yeastgenome.org/search?q=[example_id]&is_quick=true example_id: SGD:S000006169 url_example: https://www.yeastgenome.org/search?q=S000006169&is_quick=true entity_type: SO:0000704 ! gene abbreviation: SGD_LOCUS database: Saccharomyces Genome Database generic_url: http://www.yeastgenome.org/ url_syntax: https://www.yeastgenome.org/search?q=[example_id]&is_quick=true example_id: SGD_LOCUS:GAL4 url_example: https://www.yeastgenome.org/search?q=S000006169&is_quick=true entity_type: BET:0000000 ! entity abbreviation: SGD_REF database: Saccharomyces Genome Database generic_url: http://www.yeastgenome.org/ url_syntax: http://www.yeastgenome.org/reference/[example_id]/overview example_id: SGD_REF:S000049602 url_example: http://www.yeastgenome.org/reference/S000049602/overview entity_type: BET:0000000 ! entity abbreviation: SGD_PWY database: Saccharomyces Genome Database YeastPathways generic_url: https://pathway.yeastgenome.org/ url_syntax: https://www.yeastgenome.org/locus/[example_id] example_id: SGD_PWY:CYSTEINE-SYN2-PWY url_example: https://pathway.yeastgenome.org/YEAST/NEW-IMAGE?type=NIL&object=SERSYN-PWY entity_type: BET:0000000 ! entity abbreviation: SGN database: Sol Genomics Network synonym: SGN_gene generic_url: https://www.sgn.cornell.edu/ url_syntax: http://solgenomics.net/phenome/locus_display.pl?locus_id=[example_id] example_id: SGN_gene:7740 url_example: http://solgenomics.net/phenome/locus_display.pl?locus_id=7740 entity_type: SO:0000704 ! gene abbreviation: SGN_ref database: Sol Genomics Network generic_url: https://www.sgn.cornell.edu/ url_syntax: https://sgn.cornell.edu/chado/publication.pl?pub_id=[example_id] example_id: SGN_ref:861 url_example: https://sgn.cornell.edu/chado/publication.pl?pub_id=861 entity_type: BET:0000000 ! entity abbreviation: SGN_germplasm database: Sol Genomics Network generic_url: https://solgenomics.net/ url_syntax: http://solgenomics.net/stock/[example_id]/view/ example_id: SGN_germplasm:6583 url_example: http://solgenomics.net/stock/6583/view/ entity_type: BET:0000000 ! entity abbreviation: SMART database: Simple Modular Architecture Research Tool generic_url: http://smart.embl-heidelberg.de/ url_syntax: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=[example_id] example_id: SMART:SM00005 url_example: http://smart.embl-heidelberg.de/smart/do_annotation.pl?BLAST=DUMMY&DOMAIN=SM00005 entity_type: SO:0000839 ! polypeptide region abbreviation: SO database: Sequence Ontology generic_url: http://www.sequenceontology.org/ local_id_syntax: \d{7} url_syntax: http://www.sequenceontology.org/browser/current_svn/term/SO:[example_id] example_id: SO:0000400 url_example: http://www.sequenceontology.org/browser/current_svn/term/SO:0000400 entity_type: SO:0000400 ! sequence attribute local_id_syntax: \d{7} url_syntax: http://www.sequenceontology.org/browser/current_svn/term/SO:[example_id] example_id: SO:0000307 url_example: http://www.sequenceontology.org/browser/current_svn/term/SO:0000307 entity_type: SO:0000110 ! sequence feature local_id_syntax: \d{7} url_syntax: http://www.sequenceontology.org/browser/current_svn/term/SO:[example_id] example_id: SO:0001166 url_example: http://www.sequenceontology.org/browser/current_svn/term/SO:0001166 entity_type: SO:0001683 ! sequence motif abbreviation: Soy_gene database: SoyBase generic_url: https://soybase.org/ url_syntax: https://www.soybase.org/sbt/search/search_results.php?category=FeatureName&search_term=[example_id] example_id: Glyma18g02210 url_example: https://www.soybase.org/sbt/search/search_results.php?category=FeatureName&search_term=Glyma18g02210 entity_type: BET:0000000 ! gene abbreviation: SOY_QTL database: SoyBase generic_url: https://soybase.org/ url_syntax: https://www.soybase.org/sbt/search/search_results.php?category=QTLName&search_term=[example_id] example_id: Seedling, abnormal+1-1 url_example: https://www.soybase.org/sbt/search/search_results.php?category=QTLName&search_term=Seedling,+abnormal+1-1 entity_type: BET:0000000 ! entity abbreviation: SOY_ref database: SoyBase generic_url: https://soybase.org/ url_syntax: https://www.soybase.org/sbt/search/search_results.php?category=Soybase_ID&search_term=[example_id] example_id: SOY ref:SoyBase6597900 url_example: https://www.soybase.org/sbt/search/search_results.php?category=Soybase_ID&search_term=SoyBase3142000126 entity_type: BET:0000000 ! entity abbreviation: SUPERFAMILY database: SUPERFAMILY protein annotation database description: A database of structural and functional protein annotations for completely sequenced genomes generic_url: http://supfam.org/ url_syntax: http://supfam.org/scop/[example_id] example_id: SUPERFAMILY:56994 url_example: http://supfam.org/scop/56994 entity_type: BET:0000000 ! entity abbreviation: SynGO database: The Synapse Gene Ontology and Annotation Initiative generic_url: https://www.syngoportal.org/ entity_type: BET:0000000 ! entity abbreviation: SynGO-UCL database: The Synapse Gene Ontology and Annotation Initiative at UCL generic_url: https://www.ucl.ac.uk/cardiovascular/research/pre-clinical-and-fundamental-science/functional-gene-annotation/neurological-gene-2 entity_type: BET:0000000 ! entity abbreviation: SYSCILIA_CCNET database: Syscilia description: A systems biology approach to dissect cilia function and its disruption in human genetic disease generic_url: http://syscilia.org/ entity_type: BET:0000000 ! entity abbreviation: TAIR database: The Arabidopsis Information Resource generic_url: http://www.arabidopsis.org/ local_id_syntax: gene:[0-9]{7,12} url_syntax: http://arabidopsis.org/servlets/TairObject?accession=[example_id] example_id: TAIR:gene:2062713 url_example: http://arabidopsis.org/servlets/TairObject?accession=gene:2062713 entity_type: SO:0000704 ! gene local_id_syntax: Communication:[0-9]{7,12} url_syntax: http://arabidopsis.org/servlets/TairObject?type=communication&id=[example_id] example_id: TAIR:Communication:1345790 url_example: http://arabidopsis.org/servlets/TairObject?type=communication&id=1345790 entity_type: BET:0000000 ! communication local_id_syntax: locus:[0-9]{7,12} url_syntax: http://arabidopsis.org/servlets/TairObject?accession=[example_id] example_id: TAIR:locus:2146653 url_example: http://arabidopsis.org/servlets/TairObject?accession=locus:2146653 entity_type: SO:0000185 ! primary transcript abbreviation: NCBITaxon database: NCBI Taxonomy synonym: taxon synonym: ncbi_taxid generic_url: http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/ url_syntax: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=[example_id] example_id: NCBITaxon:7227 url_example: http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=3702 entity_type: BET:0000000 ! entity abbreviation: TC database: Transport Protein Database generic_url: http://www.tcdb.org/ local_id_syntax: [0-9]+\.[A-Z](\.[0-9]+)+ url_syntax: http://www.tcdb.org/tcdb/index.php?tc=[example_id] example_id: TC:9.A.4.1.1 url_example: http://www.tcdb.org/tcdb/index.php?tc=9.A.4.1.1 entity_type: PR:000000001 ! protein abbreviation: TGD database: Tetrahymena Genome Database generic_url: http://www.ciliate.org/ entity_type: BET:0000000 ! entity abbreviation: TGD_LOCUS database: Tetrahymena Genome Database generic_url: http://www.ciliate.org/ url_syntax: http://db.ciliate.org/cgi-bin/locus.pl?locus=[example_id] example_id: TGD_LOCUS:PDD1 url_example: http://db.ciliate.org/cgi-bin/locus.pl?locus=PDD1 entity_type: BET:0000000 ! entity abbreviation: TGD_REF database: Tetrahymena Genome Database generic_url: http://www.ciliate.org/ url_syntax: http://db.ciliate.org/cgi-bin/reference/reference.pl?dbid=[example_id] example_id: TGD_REF:T000005818 url_example: http://db.ciliate.org/cgi-bin/reference/reference.pl?dbid=T000005818 entity_type: BET:0000000 ! entity abbreviation: TO_GIT database: GitHub Issue Tracker for TO generic_url: https://github.com/Planteome/plant-trait-ontology url_syntax: https://github.com/Planteome/plant-trait-ontology/issues/[example_id] example_id: TO_GIT:381 url_example: https://github.com/Planteome/plant-trait-ontology/issues/381 entity_type: BET:0000000 ! entity abbreviation: TRANSFAC database: TRANSFAC database of eukaryotic transcription factors generic_url: http://www.gene-regulation.com/pub/databases.html#transfac entity_type: BET:0000000 ! entity abbreviation: TreeGenes database: Forest Tree Genome Database generic_url: http://dendrome.ucdavis.edu/treegenes/ url_syntax: http://dendrome.ucdavis.edu/treegenes/protein/view_protein.php?id=[example_id] example_id: TreeGenes:254 url_example: http://dendrome.ucdavis.edu/treegenes/protein/view_protein.php?id=254 entity_type: BET:0000000 ! entity abbreviation: TriTrypDB database: TriTrypDB generic_url: https://tritrypdb.org/ local_id_syntax: ((LmjF|LinJ|LmxM|LINF)\.[0-9]{2}\.[0-9]{4})|(Tb[0-9]+\.[A-Za-z0-9]+\.[0-9]+)|(Tb\.[0-9]{6}\.[0-9]+)| url_syntax: https://tritrypdb.org/tritrypdb/app/record/gene/[example_id] example_id: Tb927.1.630 url_example: https://tritrypdb.org/tritrypdb/app/record/gene/Tb927.1.630 entity_type: SO:0000704 ! gene abbreviation: UBERON database: Uber-anatomy ontology description: A multi-species anatomy ontology generic_url: http://uberon.org local_id_syntax: [0-9]{7} url_syntax: http://purl.obolibrary.org/obo/UBERON_[example_id] example_id: UBERON:0002398 url_example: http://purl.obolibrary.org/obo/UBERON_0002398 entity_type: CARO:0000000 ! anatomical entity local_id_syntax: [0-9]{7} url_syntax: http://purl.obolibrary.org/obo/UBERON_[example_id] example_id: UBERON:0000069 entity_type: UBERON:0000105 ! life cycle stage abbreviation: UM-BBD database: EAWAG Biocatalysis/Biodegradation Database generic_url: http://eawag-bbd.ethz.ch/ entity_type: BET:0000000 ! entity abbreviation: UM-BBD_enzymeID database: EAWAG Biocatalysis/Biodegradation Database generic_url: http://eawag-bbd.ethz.ch/ url_syntax: http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=[example_id] example_id: UM-BBD_enzymeID:e0413 url_example: http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=e0230 entity_type: BET:0000000 ! entity abbreviation: UM-BBD_pathwayID database: EAWAG Biocatalysis/Biodegradation Database generic_url: http://eawag-bbd.ethz.ch/ url_syntax: http://eawag-bbd.ethz.ch/[example_id]/[example_id]_map.html example_id: UM-BBD_pathwayID:acr url_example: http://eawag-bbd.ethz.ch/acr/acr_map.html entity_type: BET:0000000 ! entity abbreviation: UM-BBD_reactionID database: EAWAG Biocatalysis/Biodegradation Database generic_url: http://eawag-bbd.ethz.ch/ url_syntax: http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=[example_id] example_id: UM-BBD_reactionID:r0129 url_example: http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=r0129 entity_type: BET:0000000 ! entity abbreviation: UM-BBD_ruleID database: EAWAG Biocatalysis/Biodegradation Database generic_url: http://eawag-bbd.ethz.ch/ url_syntax: http://eawag-bbd.ethz.ch/servlets/rule.jsp?rule=[example_id] example_id: UM-BBD_ruleID:bt0330 url_example: http://eawag-bbd.ethz.ch/servlets/rule.jsp?rule=bt0330 entity_type: BET:0000000 ! entity abbreviation: UniParc database: UniProt Archive description: A non-redundant archive of protein sequences extracted from Swiss-Prot, TrEMBL, PIR-PSD, EMBL, Ensembl, IPI, PDB, RefSeq, FlyBase, WormBase, European Patent Office, United States Patent and Trademark Office, and Japanese Patent Office generic_url: https://www.uniprot.org/uniparc/ url_syntax: https://www.uniprot.org/uniparc/[example_id] example_id: UniParc:UPI000000000A url_example: https://www.uniprot.org/uniparc/UPI000000000A entity_type: BET:0000000 ! entity abbreviation: UniPathway database: UniPathway description: UniPathway is a a metabolic door to UniProtKB/Swiss-Prot, a curated resource of metabolic pathways for the UniProtKB/Swiss-Prot knowledgebase. generic_url: http://www.grenoble.prabi.fr/obiwarehouse/unipathway url_syntax: http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=[example_id] example_id: UniPathway:UPA00155 url_example: http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=UPA00155 entity_type: GO:0008150 ! biological_process abbreviation: UniProt database: Universal Protein Knowledgebase description: A central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR database synonym: Swiss-Prot synonym: SwissProt synonym: TrEMBL synonym: TR generic_url: http://www.uniprot.org abbreviation: UniProtKB database: Universal Protein Knowledgebase description: A central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR database generic_url: http://www.uniprot.org local_id_syntax: ([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z]([0-9][A-Z][A-Z0-9]{2}){1,2}[0-9])((-[0-9]+)|-PRO_[0-9]{10}|-VAR_[0-9]{6}){0,1} url_syntax: https://www.uniprot.org/uniprot/[example_id] example_id: UniProtKB:P51587 url_example: https://www.uniprot.org/uniprot/ entity_type: PR:000000001 ! protein abbreviation: UniProtKB-KW database: UniProt Knowledgebase keywords synonym: SP_KW generic_url: http://www.uniprot.org/keywords/ url_syntax: https://www.uniprot.org/keywords/[example_id] example_id: UniProtKB-KW:KW-0812 url_example: https://www.uniprot.org/keywords/KW-0812 entity_type: BET:0000000 ! entity abbreviation: UniProtKB-SubCell database: UniProt Knowledgebase Subcellular Location vocabulary synonym: SP_SL generic_url: https://www.uniprot.org/locations/ url_syntax: http://www.uniprot.org/locations/[example_id] example_id: UniProtKB-SubCell:SL-0012 url_example: http://www.uniprot.org/locations/SL-0012 entity_type: BET:0000000 ! entity abbreviation: UniRule database: Manually curated rules for automatic annotation of UniProtKB unreviewed entries generic_url: https://www.uniprot.org/unirule/ local_id_syntax: UR[0-9]{9}|MF_[0-9]{5}|PIRNR[0-9]{6}|PRU[0-9]{5}|RU[0-9]{6} url_syntax: https://www.uniprot.org/unirule/[example_id] example_id: UniRule:UR000107224 url_example: https://www.uniprot.org/unirule/UR000107224 entity_type: BET:0000000 ! entity abbreviation: ARBA database: ARBA machine learning models for automatic annotation of UniProtKB unreviewed entries generic_url: https://www.uniprot.org/arba/ local_id_syntax: ARBA[0-9]{8} url_syntax: https://www.uniprot.org/arba/[example_id] example_id: ARBA:ARBA00000001 url_example: https://www.uniprot.org/arba/ARBA00000001 entity_type: BET:0000000 ! entity abbreviation: VZ database: ViralZone generic_url: http://viralzone.expasy.org/ url_syntax: http://viralzone.expasy.org/all_by_protein/[example_id].html example_id: VZ:957 url_example: http://viralzone.expasy.org/all_by_protein/957.html entity_type: BET:0000000 ! entity abbreviation: WB database: WormBase database of nematode biology synonym: WormBase generic_url: http://www.wormbase.org/ local_id_syntax: (CE[0-9]{5})|(WB(Gene|Var|RNAi|Transgene)[0-9]{8}) url_syntax: http://www.wormbase.org/get?name=[example_id] example_id: WB:WBGene00003001 url_example: http://www.wormbase.org/get?name=WBGene00003001 entity_type: SO:0000704 ! gene local_id_syntax: (CE[0-9]{5})|(WB(Gene|Var|RNAi|Transgene)[0-9]{8}) url_syntax: http://www.wormbase.org/get?name=[example_id] example_id: WB:WBVar00089843 url_example: http://www.wormbase.org/get?name=WBVar00089843 entity_type: VariO:0001 ! variation local_id_syntax: (CE[0-9]{5})|(WB(Gene|Var|RNAi|Transgene)[0-9]{8}) url_syntax: http://www.wormbase.org/get?name=[example_id] example_id: WB:WBRNAi00110325 url_example: http://www.wormbase.org/get?name=WBRNAi00110325 entity_type: topic:3523 ! RNAi local_id_syntax: (CE[0-9]{5})|(WB(Gene|Var|RNAi|Transgene)[0-9]{8}) url_syntax: http://www.wormbase.org/get?name=[example_id] example_id: WB:WBTransgene00000059 url_example: http://www.wormbase.org/get?name=WBTransgene00000059 entity_type: SO:0000902 ! Transgene local_id_syntax: (CE[0-9]{5})|(WB(Gene|Var|RNAi|Transgene)[0-9]{8}) url_syntax: http://www.wormbase.org/get?name=[example_id] example_id: WB:CE00274 url_example: http://www.wormbase.org/get?name=CE00274 entity_type: PR:000000001 ! protein abbreviation: WB_REF database: WormBase database of nematode biology generic_url: http://www.wormbase.org/ url_syntax: http://www.wormbase.org/get?name=[example_id] example_id: WB_REF:WBPaper00004823 url_example: http://www.wormbase.org/get?name=WBPaper00004823 entity_type: BET:0000000 ! entity abbreviation: WBbt database: C. elegans gross anatomy generic_url: http://www.wormbase.org/ local_id_syntax: [0-9]{7} url_syntax: http://www.wormbase.org/get?name=[example_id] example_id: WBbt:0005792 url_example: http://www.wormbase.org/get?name=WBbt:0005792 entity_type: GO:0005623 ! cell local_id_syntax: [0-9]{7} url_syntax: http://www.wormbase.org/get?name=[example_id] example_id: WBbt:0005733 url_example: http://www.wormbase.org/get?name=WBbt:0005733 entity_type: UBERON:0001062 ! anatomical entity abbreviation: WBls database: C. elegans development generic_url: http://www.wormbase.org/ local_id_syntax: [0-9]{7} url_syntax: http://www.wormbase.org/get?name=[example_id] example_id: WBls:0000010 url_example: http://www.wormbase.org/get?name=WBls:0000010 entity_type: WBls:0000075 ! nematoda life stage abbreviation: WBPhenotype database: WormBase phenotype ontology generic_url: http://www.wormbase.org/ local_id_syntax: [0-9]{7} url_syntax: http://www.wormbase.org/get?name=[example_id] example_id: WBPhenotype:0002117 url_example: http://www.wormbase.org/get?name=WBPhenotype:0002117 entity_type: PATO:0000001 ! quality abbreviation: Wikipedia database: Wikipedia generic_url: http://en.wikipedia.org/ url_syntax: http://en.wikipedia.org/wiki/[example_id] example_id: Wikipedia:Endoplasmic_reticulum url_example: http://en.wikipedia.org/wiki/Endoplasmic_reticulum entity_type: BET:0000000 ! entity abbreviation: WikipediaVersioned database: WikipediaVersioned generic_url: http://en.wikipedia.org/ url_syntax: https://en.wikipedia.org/w/index.php?title=[example_id] example_id: WikipediaVersioned:Fallopian_tube&oldid=998395727 url_example: https://en.wikipedia.org/w/index.php?title=Fallopian_tube&oldid=998395727 entity_type: BET:0000000 ! entity abbreviation: Xenbase database: Xenbase generic_url: http://www.xenbase.org/ local_id_syntax: XB-(GENE|LINE|TRANSGENE|MORPHOLINO)-[0-9]+ url_syntax: http://www.xenbase.org/entry/[example_id] example_id: Xenbase:XB-GENE-6255962 url_example: http://www.xenbase.org/entry/XB-GENE-6255962 entity_type: SO:0000704 ! gene local_id_syntax: XB-(GENE|LINE|TRANSGENE|MORPHOLINO)-[0-9]+ url_syntax: http://www.xenbase.org/entry/[example_id] example_id: Xenbase:XB-MORPHOLINO-17250301 url_example: http://www.xenbase.org/entry/XB-MORPHOLINO-17250301 entity_type: SO:0000034 ! morpholino oligo local_id_syntax: XB-(GENE|LINE|TRANSGENE|MORPHOLINO)-[0-9]+ url_syntax: http://www.xenbase.org/entry/[example_id] example_id: Xenbase:XB-TRANSGENE-17326811 url_example: http://www.xenbase.org/entry/XB-TRANSGENE-17326811 entity_type: SO:0000902 ! transgene local_id_syntax: XB-(GENE|LINE|TRANSGENE|MORPHOLINO)-[0-9]+ url_syntax: http://www.xenbase.org/entry/[example_id] example_id: Xenbase:XB-LINE-1248 url_example: http://www.xenbase.org/entry/XB-LINE-1248 entity_type: EFO:0005135 ! strain abbreviation: YeastFunc database: Yeast Function generic_url: http://func.med.harvard.edu/yeast/ entity_type: BET:0000000 ! entity abbreviation: YuBioLab database: CITGeneDB description: CITGeneDB is a comprehensive database of human and mouse genes enhancing or suppressing Cold-Induced Thermogenesis (CIT). generic_url: http://citgenedb.yubiolab.org abbreviation: ZFIN database: Zebrafish Information Network generic_url: http://zfin.org/ local_id_syntax: ZDB-(TRNAG|LINCRNAG|MIRNAG|NCRNAG|SNORNAG|GENE|GENO|MRPHLNO)-[0-9]{6}-[0-9]+ url_syntax: http://zfin.org/[example_id] example_id: ZDB-GENE-990415-103 url_example: http://zfin.org/ZDB-GENE-990415-103 entity_type: SO:0000704 ! gene local_id_syntax: ZDB-(TRNAG|LINCRNAG|MIRNAG|NCRNAG|SNORNAG|GENE|GENO|MRPHLNO)-[0-9]{6}-[0-9]+ url_syntax: http://zfin.org/[example_id] example_id: ZDB-GENE-990415-103 url_example: http://zfin.org/ZDB-GENE-990415-103 entity_type: VariO:0001 ! variation abbreviation: TFClass database: TFClass is a resource for the classification of eukaryotic transcription factors based on the characteristics of their DNA-binding domains synonym: TFCLASS_FAMILY synonym: tfclass generic_url: http://tfclass.bioinf.med.uni-goettingen.de/ local_id_syntax: \d+(\.\d+){2,3} url_syntax: http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=[example_id] example_id: TFCLASS_FAMILY:2.1.1 url_example: http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=2.1.1 entity_type: PR:000000001 ! protein abbreviation: HGNC-UCL database: UCL-based HGNC description: While based at UCL, HGNC provided GO annotations for proteins during the process of assigning approved gene names and symbols generic_url: https://www.ucl.ac.uk/cardiovascular/hgnc-gene-annotation entity_type: BET:0000000 ! entity abbreviation: Animal_QTLdb database: QTLdb description: A database with curated publicly available trait mapping data (QTL and SNP associations) in livestock animal species. The link ID is called QTL_ID on QTLdb data dpownloads. generic_url: https://www.animalgenome.org/QTLdb local_id_syntax: \d+ url_syntax: https://www.animalgenome.org/QTLdb/q?id=[example_id] example_id: Animal_QTLdb:23155 url_example: https://www.animalgenome.org/QTLdb/q?id=23155 entity_type: QTL_ID:0000000 ! QTL abbreviation: Animal_CorrDB database: CorrDB description: A database with curated publicly available trait correlation and inheritability data in livestock animal species. The link ID is called The link ID is called Corr_ID on CorrDB data downloads. generic_url: https://www.animalgenome.org/CorrDB local_id_syntax: \d+ url_syntax: https://www.animalgenome.org/CorrDB/q/?id=[example_id] example_id: Animal_CorrDB:37232 url_example: https://www.animalgenome.org/CorrDB/q/?id=37232 entity_type: CorrID:000000 ! Correlation abbreviation: AlphaFold database: AlphaFold Protein Structure Database generic_url: https://alphafold.ebi.ac.uk/ local_id_syntax: ([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z]([0-9][A-Z][A-Z0-9]{2}){1,2}[0-9])((-[0-9]+)|-PRO_[0-9]{10}|-VAR_[0-9]{6}){0,1} url_syntax: https://alphafold.ebi.ac.uk/entry/[example_id] example_id: AlphaFold:Q5VSL9 url_example: https://alphafold.ebi.ac.uk/entry/Q5VSL9 entity_type: PR:000000001 ! protein abbreviation: JaponicusDB database: JaponicusDB generic_url: https://www.japonicusdb.org/ url_syntax: https://www.japonicusdb.org/gene/[example_id] example_id: JaponicusDB:SJAG_01143 url_example: https://www.japonicusdb.org/gene/SJAG_01143 entity_type: SO:0000704 ! gene abbreviation: TreeGrafter database: TreeGrafter-generated GO annotations generic_url: http://www.pantherdb.org/ local_id_syntax: PTN[0-9]{9}|PTHR[0-9]{5}|PTHR[0-9]{5}:SF[0-9]+ url_syntax: http://www.pantherdb.org/panther/lookupId.jsp?id=[example_id] example_id: PANTHER:PTHR11455 url_example: http://www.pantherdb.org/panther/lookupId.jsp?id=PTHR10000 entity_type: NCIT:C20130 ! protein family